pycom01g06100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Reverse (-)
6191978 .. 6193879
1902 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 300 bp
ATGACGACTCGAGTTCCTTTCTCGCCAAGCTCATCCTCTTCCTGGGTGTGCTTATTTTACTTGTTTCACAGATTTCTGCTGCATTTCTCGAGGAAGCATCCAAATGCTTTACCGGCAAAGGCCATGGAGAAAATTGTGAAAATGCTTTGCAGCTTGACTGTGGCCATAAGCTGGAGTCTAGTTCATTGCACACTGATTTTGAAGAGATGGCTATGGTTGGACTGGATGCAATGCAACGAGCAAATTCTACCCTTGAAGATTTTTGCAGATCTTATTTTATGTTCCATGGAATGTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.62

Weight (kDa)

9.08

Isoelectric Point (pI)

66.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 171
AcoI YGGCCR 1 cut(s) 162
AcsI RAATTY 1 cut(s) 243
AfiI CCNNNNNNNGG 2 cut(s) 42, 171
AgsI TTSAA 2 cut(s) 202, 256
AjnI CCWGG 1 cut(s) 41
AluBI AGCT 3 cut(s) 30, 153, 171
AluI AGCT 3 cut(s) 30, 153, 171
Ama87I CYCGRG 2 cut(s) 9, 88
AoxI GGCC 2 cut(s) 120, 162
ApeKI GCWGC 2 cut(s) 79, 150
ApoI RAATTY 1 cut(s) 243
AvaI CYCGRG 2 cut(s) 9, 88
BalI TGGCCA 1 cut(s) 164
BbvI GCAGC 2 cut(s) 66, 162
BccI CCATC 1 cut(s) 201
BciT130I CCWGG 1 cut(s) 43
BfaI CTAG 1 cut(s) 179
BglII AGATCT 1 cut(s) 268
BisI GCNGC 2 cut(s) 80, 151
BlsI GCNGC 2 cut(s) 81, 152
Bme1390I CCNGG 1 cut(s) 43
BmeT110I CYCGRG 2 cut(s) 9, 88
BmrFI CCNGG 1 cut(s) 43
BmsI GCATC 2 cut(s) 106, 216
BpmI CTGGAG 1 cut(s) 193
BsaJI CCNNGG 3 cut(s) 42, 123, 285
Bsc4I CCNNNNNNNGG 2 cut(s) 42, 171
Bse118I RCCGGY 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 227
Bse3DI GCAATG 2 cut(s) 184, 236
BseBI CCWGG 1 cut(s) 43
BseDI CCNNGG 3 cut(s) 42, 123, 285
BseGI GGATG 3 cut(s) 32, 97, 231
BseLI CCNNNNNNNGG 2 cut(s) 42, 171
BseMI GCAATG 2 cut(s) 184, 236
BseNI ACTGG 1 cut(s) 227
BseXI GCAGC 2 cut(s) 66, 162
BshFI GGCC 2 cut(s) 122, 164
BsiHKCI CYCGRG 2 cut(s) 9, 88
BsiSI CCGG 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 42, 171
BsnI GGCC 2 cut(s) 122, 164
BsoBI CYCGRG 2 cut(s) 9, 88
Bsp143I GATC 1 cut(s) 268
Bsp19I CCATGG 2 cut(s) 123, 285
BspANI GGCC 2 cut(s) 122, 164
BsrDI GCAATG 2 cut(s) 184, 236
BsrFI RCCGGY 1 cut(s) 112
BsrI ACTGG 1 cut(s) 227
BssAI RCCGGY 1 cut(s) 112
BssECI CCNNGG 3 cut(s) 42, 123, 285
BssMI GATC 1 cut(s) 268
BssT1I CCWWGG 2 cut(s) 123, 285
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 2 cut(s) 43, 197
BstDSI CCRYGG 2 cut(s) 123, 285
BstF5I GGATG 3 cut(s) 32, 97, 231
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 41
BstV1I GCAGC 2 cut(s) 66, 162
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BsuRI GGCC 2 cut(s) 122, 164
BtgI CCRYGG 2 cut(s) 123, 285
BtsCI GGATG 3 cut(s) 32, 97, 231
BtsIMutI CAGTG 1 cut(s) 191
Cfr10I RCCGGY 1 cut(s) 112
CviAII CATG 2 cut(s) 124, 286
CviJI RGCY 6 cut(s) 30, 122, 153, 164, 171, 211
CviKI_1 RGCY 6 cut(s) 30, 122, 153, 164, 171, 211
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 162
Eam1104I CTCTTC 2 cut(s) 43, 197
EarI CTCTTC 2 cut(s) 43, 197
Eco130I CCWWGG 2 cut(s) 123, 285
Eco88I CYCGRG 2 cut(s) 9, 88
EcoRII CCWGG 1 cut(s) 41
EcoT14I CCWWGG 2 cut(s) 123, 285
ErhI CCWWGG 2 cut(s) 123, 285
FaeI CATG 2 cut(s) 127, 289
FaiI YATR 7 cut(s) 125, 167, 214, 280, 287, 296, 298
FatI CATG 2 cut(s) 123, 285
Fnu4HI GCNGC 2 cut(s) 80, 151
FokI GGATG 3 cut(s) 19, 84, 238
Fsp4HI GCNGC 2 cut(s) 80, 151
FspBI CTAG 1 cut(s) 179
GluI GCNGC 2 cut(s) 80, 151
GsuI CTGGAG 1 cut(s) 193
HaeIII GGCC 2 cut(s) 122, 164
HapII CCGG 1 cut(s) 113
Hin1II CATG 2 cut(s) 127, 289
HinfI GANTC 2 cut(s) 7, 175
HpaII CCGG 1 cut(s) 113
Hpy188III TCNNGA 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 6 cut(s) 82, 150, 189, 229, 234, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
Hsp92II CATG 2 cut(s) 127, 289
Kzo9I GATC 1 cut(s) 268
LpnPI CCDG 5 cut(s) 28, 55, 126, 157, 208
Lsp1109I GCAGC 2 cut(s) 66, 162
LweI GCATC 2 cut(s) 106, 216
MaeI CTAG 1 cut(s) 179
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 3 cut(s) 30, 214, 268
MflI RGATCY 1 cut(s) 268
MlsI TGGCCA 1 cut(s) 164
MluCI AATT 2 cut(s) 132, 243
MluNI TGGCCA 1 cut(s) 164
MlyI GAGTC 1 cut(s) 184
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 2 cut(s) 46, 84
Mox20I TGGCCA 1 cut(s) 164
MscI TGGCCA 1 cut(s) 164
MslI CAYNNNNRTG 1 cut(s) 102
Msp20I TGGCCA 1 cut(s) 164
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 43
MvaI CCWGG 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 113
NcoI CCATGG 2 cut(s) 123, 285
NdeII GATC 1 cut(s) 268
NlaIII CATG 2 cut(s) 127, 289
PaeR7I CTCGAG 2 cut(s) 9, 88
PflMI CCANNNNNTGG 1 cut(s) 171
PkrI GCNGC 2 cut(s) 81, 152
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 41
PspXI VCTCGAGB 1 cut(s) 9
PsuI RGATCY 1 cut(s) 268
RseI CAYNNNNRTG 1 cut(s) 102
SatI GCNGC 2 cut(s) 80, 151
Sau3AI GATC 1 cut(s) 268
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 1 cut(s) 43
SetI ASST 3 cut(s) 32, 155, 173
SfaNI GCATC 2 cut(s) 106, 216
Sfr274I CTCGAG 2 cut(s) 9, 88
SlaI CTCGAG 2 cut(s) 9, 88
SmiMI CAYNNNNRTG 1 cut(s) 102
SmlI CTYRAG 2 cut(s) 9, 88
SmoI CTYRAG 2 cut(s) 9, 88
Sse9I AATT 2 cut(s) 132, 243
SspMI CTAG 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 41
StyI CCWWGG 2 cut(s) 123, 285
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 2 cut(s) 10, 89
TasI AATT 2 cut(s) 132, 243
TscAI CASTG 1 cut(s) 198
TseI GCWGC 2 cut(s) 79, 150
TspDTI ATGAA 1 cut(s) 173
TspRI CASTG 1 cut(s) 198
Van91I CCANNNNNTGG 1 cut(s) 171
XapI RAATTY 1 cut(s) 243
XhoI CTCGAG 2 cut(s) 9, 88
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.