pycom01g06220

lanC-like protein GCL1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Reverse (-)
6329601 .. 6334842
5242 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 570 bp
ATGTCGTTTGGAGTGAAGTTTGCGTTGCCTCCGGAGGACCACGAAGATGCCAACAAGGAACGGGTGGATTTGGTTGATCCAACGGCTCCGAACTTGTCACTTCCGAGCGGGACTTTTCTCATAGCGGCGGTGGCTCTCAAGGATCAGGTGGTGCAGGCTACATGGGAAGGAGGACATGGTTCGGGTAAGCCTACGGGTATGGTTTTGGATCCGACAGTGTATACGGGTCTCCTTGGTACGGCTTTTACGTGTTTGAGGTCGTATGAGGCTACCGGTAACCGGCAGGACTTGCTGCTCTGCGCTGATATCGTTCACAAGTGCGGGGCCGTCGCACCTGCGTCCAGCAGGCACGTGACTTTTTTATGTGGTAGGGGAGGAGTGTACGCCCTAGGAGCTGTGGTGGCTAGTTTGATTGGGGACCATGGAAGATGTGGCCTCTATTTGAACCTGTTTCTTGAGGTGGCACAAGAGAAGGCCTTGTCTGTTGGGCCAGAGGAAGGTGGTTTTGGAATGTCGTACGATCGATTCTCTACGGGAGAGCTGGGTTTTTATGGGCAGCTTTGTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0019898 GO:0023052 GO:0044425 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LANC_like

Protein Analysis

190

Amino Acids

19.87

Weight (kDa)

5.11

Isoelectric Point (pI)

33.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LANC_like PF05147 68 - 164 5.1e-17 Lanthionine synthetase C-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 343
Acc36I ACCTGC 1 cut(s) 343
AccBSI CCGCTC 1 cut(s) 108
AccI GTMKAC 1 cut(s) 221
AccIII TCCGGA 1 cut(s) 31
AciI CCGC 4 cut(s) 108, 125, 128, 321
AclWI GGATC 4 cut(s) 71, 150, 203, 216
AcvI CACGTG 1 cut(s) 352
AfaI GTAC 3 cut(s) 238, 383, 518
AfiI CCNNNNNNNGG 3 cut(s) 238, 279, 497
AflIII ACRYGT 1 cut(s) 248
AgeI ACCGGT 1 cut(s) 272
AgsI TTSAA 1 cut(s) 445
AjuI GAANNNNNNNTTGG 2 cut(s) 489, 521
AluBI AGCT 3 cut(s) 395, 541, 559
AluI AGCT 3 cut(s) 395, 541, 559
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 4 cut(s) 71, 150, 203, 216
Aor13HI TCCGGA 1 cut(s) 31
AoxI GGCC 4 cut(s) 324, 433, 474, 488
ApeKI GCWGC 2 cut(s) 292, 556
AsiGI ACCGGT 1 cut(s) 272
AspA2I CCTAGG 1 cut(s) 388
AspLEI GCGC 1 cut(s) 302
AspS9I GGNCC 4 cut(s) 37, 324, 418, 488
AvaII GGWCC 2 cut(s) 37, 418
AvrII CCTAGG 1 cut(s) 388
BamHI GGATCC 1 cut(s) 208
BbrPI CACGTG 1 cut(s) 352
BbvI GCAGC 1 cut(s) 279
BceAI ACGGC 3 cut(s) 99, 255, 311
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 2 cut(s) 389, 405
BfuAI ACCTGC 1 cut(s) 343
BisI GCNGC 3 cut(s) 126, 293, 557
BlnI CCTAGG 1 cut(s) 388
BlsI GCNGC 3 cut(s) 127, 294, 558
Bme18I GGWCC 2 cut(s) 37, 418
BmgT120I GGNCC 4 cut(s) 37, 324, 418, 488
BmiI GGNNCC 4 cut(s) 87, 210, 325, 419
BmsI GCATC 1 cut(s) 37
BpuEI CTTGAG 2 cut(s) 122, 476
Bsa29I ATCGAT 1 cut(s) 523
BsaAI YACGTR 2 cut(s) 249, 352
BsaI GGTCTC 1 cut(s) 233
BsaJI CCNNGG 3 cut(s) 232, 388, 421
BsaWI WCCGGW 2 cut(s) 31, 272
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bsc4I CCNNNNNNNGG 3 cut(s) 238, 279, 497
Bse118I RCCGGY 2 cut(s) 272, 279
BseAI TCCGGA 1 cut(s) 31
BseCI ATCGAT 1 cut(s) 523
BseDI CCNNGG 3 cut(s) 232, 388, 421
BseLI CCNNNNNNNGG 3 cut(s) 238, 279, 497
BseRI GAGGAG 1 cut(s) 390
BseXI GCAGC 1 cut(s) 279
BseYI CCCAGC 1 cut(s) 541
BsgI GTGCAG 1 cut(s) 173
Bsh1285I CGRYCG 1 cut(s) 523
BshFI GGCC 4 cut(s) 326, 435, 476, 490
BshTI ACCGGT 1 cut(s) 272
BshVI ATCGAT 1 cut(s) 523
BsiEI CGRYCG 1 cut(s) 523
BsiSI CCGG 3 cut(s) 32, 273, 280
BsiWI CGTACG 1 cut(s) 516
BslFI GGGAC 2 cut(s) 124, 431
BslI CCNNNNNNNGG 3 cut(s) 238, 279, 497
BsmAI GTCTC 1 cut(s) 233
BsmFI GGGAC 2 cut(s) 124, 431
BsnI GGCC 4 cut(s) 326, 435, 476, 490
Bso31I GGTCTC 1 cut(s) 233
Bsp13I TCCGGA 1 cut(s) 31
Bsp143I GATC 4 cut(s) 76, 142, 208, 520
Bsp19I CCATGG 1 cut(s) 421
BspACI CCGC 4 cut(s) 108, 125, 128, 321
BspANI GGCC 4 cut(s) 326, 435, 476, 490
BspDI ATCGAT 1 cut(s) 523
BspEI TCCGGA 1 cut(s) 31
BspLI GGNNCC 4 cut(s) 87, 210, 325, 419
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 4 cut(s) 71, 150, 203, 216
BspTNI GGTCTC 1 cut(s) 233
BsrBI CCGCTC 1 cut(s) 108
BsrFI RCCGGY 2 cut(s) 272, 279
BssAI RCCGGY 2 cut(s) 272, 279
BssECI CCNNGG 3 cut(s) 232, 388, 421
BssMI GATC 4 cut(s) 76, 142, 208, 520
BssNAI GTATAC 1 cut(s) 222
BssT1I CCWWGG 3 cut(s) 232, 388, 421
Bst1107I GTATAC 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 217
BstAPI GCANNNNNTGC 1 cut(s) 289
BstBAI YACGTR 2 cut(s) 249, 352
BstC8I GCNNGC 2 cut(s) 156, 347
BstDSI CCRYGG 1 cut(s) 421
BstEII GGTNACC 1 cut(s) 275
BstHHI GCGC 1 cut(s) 302
BstKTI GATC 4 cut(s) 79, 145, 211, 523
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 4 cut(s) 76, 142, 208, 520
BstMCI CGRYCG 1 cut(s) 523
BstMWI GCNNNNNNNGC 4 cut(s) 131, 289, 392, 401
BstPI GGTNACC 1 cut(s) 275
BstV1I GCAGC 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BstZ17I GTATAC 1 cut(s) 222
Bsu15I ATCGAT 1 cut(s) 523
BsuRI GGCC 4 cut(s) 326, 435, 476, 490
BsuTUI ATCGAT 1 cut(s) 523
BtgI CCRYGG 1 cut(s) 421
BtsIMutI CAGTG 1 cut(s) 222
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 2 cut(s) 156, 347
CfoI GCGC 1 cut(s) 302
Cfr10I RCCGGY 2 cut(s) 272, 279
Cfr13I GGNCC 4 cut(s) 37, 324, 418, 488
ClaI ATCGAT 1 cut(s) 523
CseI GACGC 1 cut(s) 327
Csp6I GTAC 3 cut(s) 237, 382, 517
CspAI ACCGGT 1 cut(s) 272
CviAII CATG 3 cut(s) 162, 176, 422
CviQI GTAC 3 cut(s) 237, 382, 517
DpnI GATC 4 cut(s) 78, 144, 210, 522
DpnII GATC 4 cut(s) 76, 142, 208, 520
Eco130I CCWWGG 3 cut(s) 232, 388, 421
Eco147I AGGCCT 1 cut(s) 476
Eco31I GGTCTC 1 cut(s) 233
Eco32I GATATC 1 cut(s) 307
Eco47I GGWCC 2 cut(s) 37, 418
Eco72I CACGTG 1 cut(s) 352
Eco91I GGTNACC 1 cut(s) 275
EcoO65I GGTNACC 1 cut(s) 275
EcoRV GATATC 1 cut(s) 307
EcoT14I CCWWGG 3 cut(s) 232, 388, 421
ErhI CCWWGG 3 cut(s) 232, 388, 421
FaeI CATG 3 cut(s) 165, 179, 425
FaqI GGGAC 2 cut(s) 124, 431
FatI CATG 3 cut(s) 161, 175, 421
FauI CCCGC 2 cut(s) 101, 314
FblI GTMKAC 1 cut(s) 221
Fnu4HI GCNGC 3 cut(s) 126, 293, 557
Fsp4HI GCNGC 3 cut(s) 126, 293, 557
FspBI CTAG 2 cut(s) 389, 405
GlaI GCGC 1 cut(s) 301
GluI GCNGC 3 cut(s) 126, 293, 557
GsaI CCCAGC 1 cut(s) 545
HaeIII GGCC 4 cut(s) 326, 435, 476, 490
HapII CCGG 3 cut(s) 32, 273, 280
HgaI GACGC 1 cut(s) 327
HhaI GCGC 1 cut(s) 302
Hin1II CATG 3 cut(s) 165, 179, 425
Hin6I GCGC 1 cut(s) 300
HinP1I GCGC 1 cut(s) 300
HinfI GANTC 1 cut(s) 525
HpaII CCGG 3 cut(s) 32, 273, 280
Hpy166II GTNNAC 3 cut(s) 222, 313, 382
Hpy188I TCNGA 3 cut(s) 90, 105, 213
Hpy188III TCNNGA 2 cut(s) 32, 455
Hpy8I GTNNAC 3 cut(s) 222, 313, 382
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 3 cut(s) 161, 466, 491
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4IV ACGT 2 cut(s) 248, 351
HpyCH4V TGCA 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 289, 392, 401
HpySE526I ACGT 2 cut(s) 248, 351
Hsp92II CATG 3 cut(s) 165, 179, 425
HspAI GCGC 1 cut(s) 300
Kpn2I TCCGGA 1 cut(s) 31
Kzo9I GATC 4 cut(s) 76, 142, 208, 520
LmnI GCTCC 2 cut(s) 91, 392
Lsp1109I GCAGC 1 cut(s) 279
LweI GCATC 1 cut(s) 37
MaeI CTAG 2 cut(s) 389, 405
MaeII ACGT 2 cut(s) 248, 351
MaeIII GTNAC 3 cut(s) 96, 275, 352
MalI GATC 4 cut(s) 78, 144, 210, 522
MbiI CCGCTC 1 cut(s) 108
MboI GATC 4 cut(s) 76, 142, 208, 520
MboII GAAGA 2 cut(s) 56, 438
MflI RGATCY 1 cut(s) 208
MmeI TCCRAC 2 cut(s) 104, 236
MnlI CCTC 9 cut(s) 28, 39, 164, 249, 259, 368, 446, 451, 487
MroI TCCGGA 1 cut(s) 31
MslI CAYNNNNRTG 1 cut(s) 45
MspI CCGG 3 cut(s) 32, 273, 280
MwoI GCNNNNNNNGC 4 cut(s) 131, 289, 392, 401
NcoI CCATGG 1 cut(s) 421
NdeII GATC 4 cut(s) 76, 142, 208, 520
NlaIII CATG 3 cut(s) 165, 179, 425
NlaIV GGNNCC 4 cut(s) 87, 210, 325, 419
NmuCI GTSAC 2 cut(s) 96, 352
PaqCI CACCTGC 1 cut(s) 343
PceI AGGCCT 1 cut(s) 476
PcsI WCGNNNNNNNCGW 1 cut(s) 245
PfeI GAWTC 1 cut(s) 525
Pfl23II CGTACG 1 cut(s) 516
PinAI ACCGGT 1 cut(s) 272
PkrI GCNGC 3 cut(s) 127, 294, 558
Ple19I CGATCG 1 cut(s) 523
PmaCI CACGTG 1 cut(s) 352
PmlI CACGTG 1 cut(s) 352
Ppu21I YACGTR 2 cut(s) 249, 352
PspCI CACGTG 1 cut(s) 352
PspEI GGTNACC 1 cut(s) 275
PspFI CCCAGC 1 cut(s) 541
PspLI CGTACG 1 cut(s) 516
PspN4I GGNNCC 4 cut(s) 87, 210, 325, 419
PspPI GGNCC 4 cut(s) 37, 324, 418, 488
PsuI RGATCY 1 cut(s) 208
PvuI CGATCG 1 cut(s) 523
RsaI GTAC 3 cut(s) 238, 383, 518
RsaNI GTAC 3 cut(s) 237, 382, 517
RseI CAYNNNNRTG 1 cut(s) 45
SatI GCNGC 3 cut(s) 126, 293, 557
Sau3AI GATC 4 cut(s) 76, 142, 208, 520
Sau96I GGNCC 4 cut(s) 37, 324, 418, 488
SfaNI GCATC 1 cut(s) 37
SinI GGWCC 2 cut(s) 37, 418
SmiMI CAYNNNNRTG 1 cut(s) 45
SmlI CTYRAG 2 cut(s) 137, 455
SmoI CTYRAG 2 cut(s) 137, 455
SseBI AGGCCT 1 cut(s) 476
SsiI CCGC 4 cut(s) 108, 125, 128, 321
SspMI CTAG 2 cut(s) 389, 405
StuI AGGCCT 1 cut(s) 476
StyI CCWWGG 3 cut(s) 232, 388, 421
TaaI ACNGT 1 cut(s) 217
TaiI ACGT 2 cut(s) 251, 354
TaqI TCGA 1 cut(s) 523
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 1 cut(s) 525
TscAI CASTG 1 cut(s) 222
TseFI GTSAC 2 cut(s) 96, 352
TseI GCWGC 2 cut(s) 292, 556
Tsp45I GTSAC 2 cut(s) 96, 352
TspDTI ATGAA 1 cut(s) 555
TspRI CASTG 1 cut(s) 222
VpaK11BI GGWCC 2 cut(s) 37, 418
XcmI CCANNNNNNNNNTGG 1 cut(s) 428
XmaJI CCTAGG 1 cut(s) 388
XmiI GTMKAC 1 cut(s) 221
XspI CTAG 2 cut(s) 389, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.