pycom01g06280

LMBR1 domain-containing protein 2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
6400428 .. 6402252
1825 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 912 bp
ATGATATGCTCGATGGTTGCTCGTTATGCTCCTCCAGTTTCATACAATTTCCTTAATCTCATTCGTCTTGGTGAACATAAGACCATATTTGAGAAGCGAATGGGAAACATTGATCAAGCTGTCCCTTTCTTTGGGAGTGAGTTTAACAGAATTTATCCACTTATCATGGTTGTGTACACCCTGTTGGTTGCGTGCAATTTTTTTGACCGCATAATTGATTTTTTTGGGAGCTGGAAGCGATTTAGGTTTCAAACCGAGGCTGATGATATGGATGGTTTTGATCGATCTGGATTAATTATCTTACAAAAGGAACGATCTTGGATTGAACAAGGTCTGAAAGTTGGTGAACATGTTATACCCCTAGCTAGGAATTTCAACAGCACGGATGTTGAGACAGGCAGCAACAACATGGATAGGACTCATGTTGAACTGAAAGCAACAACCAGTCTAGGCACTGAGGGTGCAAACGGAACTGCCTCAAAATCCTTGAGAGATGAATCTCCTATTAGATATGGCTCAAGCAAAGAAGCTATCAGCAACAAGTATGCTGCCATTAGAGATCAGAGCAGGCAATCATCTTCGAATACAAATCAGAATATTTCTGCTGCCAAGGTCTCCTTGTTTGACGAAGGCAACTCTCACCCTGATAGCATGGCAGGAGGGTTACATACTGGTTTGTCCTCAAAGTGGGAATCAATGAAAAACGGTTTCCAAAATTTCAAGGCAAACATAGCGGCCAAAAAATTCATTCCCTTGCACCAAGTTCAAGATACTGTAGAGCTATCTCGTGCTTCATCTAATGAGTCCCTCGATGAGATATTCCAGAGATTGAAACGGCGGTCGGTAGACCATGTGAGTTATGTTGACGAGGATGAAGATGGCATGGAGGGGAAGTCTGGTCCCAGCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LMBR1

Protein Analysis

304

Amino Acids

34.06

Weight (kDa)

6.41

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LMBR1 PF04791 2 - 67 2.8e-09 LMBR1-like membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 846
AciI CCGC 3 cut(s) 208, 734, 838
AcoI YGGCCR 1 cut(s) 735
AcsI RAATTY 4 cut(s) 150, 370, 715, 743
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 3 cut(s) 131, 366, 687
AflIII ACRYGT 1 cut(s) 349
AgsI TTSAA 7 cut(s) 251, 326, 376, 428, 721, 767, 832
AluBI AGCT 5 cut(s) 119, 231, 365, 530, 781
AluI AGCT 5 cut(s) 119, 231, 365, 530, 781
Alw26I GTCTC 2 cut(s) 386, 619
AoxI GGCC 1 cut(s) 735
ApeKI GCWGC 3 cut(s) 399, 548, 605
ApoI RAATTY 4 cut(s) 150, 370, 715, 743
AseI ATTAAT 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 899
AsuHPI GGTGA 3 cut(s) 83, 356, 632
AsuII TTCGAA 1 cut(s) 581
AvaII GGWCC 1 cut(s) 899
BauI CACGAG 1 cut(s) 786
BbvI GCAGC 3 cut(s) 411, 535, 592
BccI CCATC 3 cut(s) 7, 266, 872
BceAI ACGGC 1 cut(s) 851
BclI TGATCA 1 cut(s) 112
BcoDI GTCTC 2 cut(s) 386, 619
BfaI CTAG 3 cut(s) 362, 366, 449
BfmI CTRYAG 1 cut(s) 774
BisI GCNGC 4 cut(s) 400, 549, 606, 735
BlsI GCNGC 4 cut(s) 401, 550, 607, 736
Bme18I GGWCC 1 cut(s) 899
BmgT120I GGNCC 1 cut(s) 899
BmiI GGNNCC 1 cut(s) 901
BpmI CTGGAG 1 cut(s) 18
Bpu14I TTCGAA 1 cut(s) 581
BpuEI CTTGAG 2 cut(s) 502, 508
Bsa29I ATCGAT 1 cut(s) 283
BsaI GGTCTC 1 cut(s) 619
BsaJI CCNNGG 2 cut(s) 255, 609
BsaXI ACNNNNNCTCC 2 cut(s) 878, 908
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 366, 687
Bse1I ACTGG 3 cut(s) 35, 444, 676
BseCI ATCGAT 1 cut(s) 283
BseDI CCNNGG 2 cut(s) 255, 609
BseGI GGATG 3 cut(s) 277, 391, 877
BseLI CCNNNNNNNGG 3 cut(s) 131, 366, 687
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 3 cut(s) 35, 444, 676
BseRI GAGGAG 1 cut(s) 21
BseXI GCAGC 3 cut(s) 411, 535, 592
BseYI CCCAGC 1 cut(s) 902
Bsh1285I CGRYCG 1 cut(s) 842
BshFI GGCC 1 cut(s) 737
BshVI ATCGAT 1 cut(s) 283
BsiEI CGRYCG 1 cut(s) 842
BslFI GGGAC 3 cut(s) 107, 790, 885
BslI CCNNNNNNNGG 3 cut(s) 131, 366, 687
BsmAI GTCTC 2 cut(s) 386, 619
BsmFI GGGAC 3 cut(s) 107, 790, 885
BsnI GGCC 1 cut(s) 737
Bso31I GGTCTC 1 cut(s) 619
Bsp119I TTCGAA 1 cut(s) 581
Bsp1407I TGTACA 1 cut(s) 174
Bsp143I GATC 5 cut(s) 112, 280, 284, 314, 559
BspACI CCGC 3 cut(s) 208, 734, 838
BspANI GGCC 1 cut(s) 737
BspCNI CTCAG 1 cut(s) 448
BspDI ATCGAT 1 cut(s) 283
BspLI GGNNCC 1 cut(s) 901
BspT104I TTCGAA 1 cut(s) 581
BspTNI GGTCTC 1 cut(s) 619
BsrGI TGTACA 1 cut(s) 174
BsrI ACTGG 3 cut(s) 35, 444, 676
BssECI CCNNGG 2 cut(s) 255, 609
BssMI GATC 5 cut(s) 112, 280, 284, 314, 559
BssSI CACGAG 1 cut(s) 786
BssT1I CCWWGG 1 cut(s) 609
Bst2BI CACGAG 1 cut(s) 786
Bst4CI ACNGT 2 cut(s) 707, 775
BstAUI TGTACA 1 cut(s) 174
BstBI TTCGAA 1 cut(s) 581
BstC8I GCNNGC 2 cut(s) 193, 569
BstDEI CTNAG 1 cut(s) 456
BstF5I GGATG 3 cut(s) 277, 391, 877
BstKTI GATC 5 cut(s) 115, 283, 287, 317, 562
BstMAI GTCTC 2 cut(s) 386, 619
BstMBI GATC 5 cut(s) 112, 280, 284, 314, 559
BstMCI CGRYCG 1 cut(s) 842
BstMWI GCNNNNNNNGC 2 cut(s) 26, 731
BstNSI RCATGY 1 cut(s) 353
BstSFI CTRYAG 1 cut(s) 774
BstV1I GCAGC 3 cut(s) 411, 535, 592
Bsu15I ATCGAT 1 cut(s) 283
BsuRI GGCC 1 cut(s) 737
BsuTUI ATCGAT 1 cut(s) 283
BtsCI GGATG 3 cut(s) 277, 391, 877
BtsIMutI CAGTG 1 cut(s) 453
Cac8I GCNNGC 2 cut(s) 193, 569
Cfr13I GGNCC 1 cut(s) 899
ClaI ATCGAT 1 cut(s) 283
Csp6I GTAC 1 cut(s) 175
CviAII CATG 7 cut(s) 166, 350, 409, 422, 652, 851, 883
CviJI RGCY 8 cut(s) 119, 231, 260, 365, 516, 530, 737, 781
CviKI_1 RGCY 8 cut(s) 119, 231, 260, 365, 516, 530, 737, 781
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 456
DpnI GATC 5 cut(s) 114, 282, 286, 316, 561
DpnII GATC 5 cut(s) 112, 280, 284, 314, 559
EaeI YGGCCR 1 cut(s) 735
Eco130I CCWWGG 1 cut(s) 609
Eco31I GGTCTC 1 cut(s) 619
Eco47I GGWCC 1 cut(s) 899
EcoT14I CCWWGG 1 cut(s) 609
ErhI CCWWGG 1 cut(s) 609
FaeI CATG 7 cut(s) 169, 353, 412, 425, 655, 854, 886
FalI AAGNNNNNCTT 2 cut(s) 602, 634
FaqI GGGAC 3 cut(s) 107, 790, 885
FatI CATG 7 cut(s) 165, 349, 408, 421, 651, 850, 882
FbaI TGATCA 1 cut(s) 112
FblI GTMKAC 1 cut(s) 846
Fnu4HI GCNGC 4 cut(s) 400, 549, 606, 735
FokI GGATG 3 cut(s) 284, 398, 884
Fsp4HI GCNGC 4 cut(s) 400, 549, 606, 735
FspBI CTAG 3 cut(s) 362, 366, 449
GluI GCNGC 4 cut(s) 400, 549, 606, 735
GsaI CCCAGC 1 cut(s) 906
GsuI CTGGAG 1 cut(s) 18
HaeIII GGCC 1 cut(s) 737
Hin1II CATG 7 cut(s) 169, 353, 412, 425, 655, 854, 886
HincII GTYRAC 1 cut(s) 865
HindII GTYRAC 1 cut(s) 865
HinfI GANTC 4 cut(s) 418, 497, 692, 803
HphI GGTGA 3 cut(s) 83, 356, 632
Hpy166II GTNNAC 6 cut(s) 74, 175, 177, 347, 847, 865
Hpy188I TCNGA 3 cut(s) 336, 564, 594
Hpy188III TCNNGA 3 cut(s) 288, 767, 823
Hpy8I GTNNAC 6 cut(s) 74, 175, 177, 347, 847, 865
HpyAV CCTTC 1 cut(s) 623
HpyCH4III ACNGT 2 cut(s) 707, 775
HpyCH4V TGCA 3 cut(s) 195, 464, 757
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 731
HpyF3I CTNAG 1 cut(s) 456
Hsp92II CATG 7 cut(s) 169, 353, 412, 425, 655, 854, 886
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 5 cut(s) 112, 280, 284, 314, 559
LmnI GCTCC 2 cut(s) 34, 228
Lsp1109I GCAGC 3 cut(s) 411, 535, 592
MaeI CTAG 3 cut(s) 362, 366, 449
MaeIII GTNAC 1 cut(s) 663
MalI GATC 5 cut(s) 114, 282, 286, 316, 561
MboI GATC 5 cut(s) 112, 280, 284, 314, 559
MboII GAAGA 2 cut(s) 570, 887
MluCI AATT 8 cut(s) 46, 150, 196, 213, 294, 370, 715, 743
MlyI GAGTC 2 cut(s) 412, 812
MnlI CCTC 9 cut(s) 42, 250, 451, 487, 653, 691, 818, 862, 880
MseI TTAA 3 cut(s) 54, 144, 293
MslI CAYNNNNRTG 1 cut(s) 170
MwoI GCNNNNNNNGC 2 cut(s) 26, 731
NdeII GATC 5 cut(s) 112, 280, 284, 314, 559
NlaIII CATG 7 cut(s) 169, 353, 412, 425, 655, 854, 886
NlaIV GGNNCC 1 cut(s) 901
NspI RCATGY 1 cut(s) 353
NspV TTCGAA 1 cut(s) 581
PciI ACATGT 1 cut(s) 349
PfeI GAWTC 2 cut(s) 497, 692
PkrI GCNGC 4 cut(s) 401, 550, 607, 736
PleI GAGTC 2 cut(s) 412, 811
PpsI GAGTC 2 cut(s) 412, 811
PscI ACATGT 1 cut(s) 349
PshBI ATTAAT 1 cut(s) 293
PspFI CCCAGC 1 cut(s) 902
PspN4I GGNNCC 1 cut(s) 901
PspPI GGNCC 1 cut(s) 899
PsrI GAACNNNNNNTAC 2 cut(s) 339, 371
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 170
SaqAI TTAA 3 cut(s) 54, 144, 293
SatI GCNGC 4 cut(s) 400, 549, 606, 735
Sau3AI GATC 5 cut(s) 112, 280, 284, 314, 559
Sau96I GGNCC 1 cut(s) 899
SchI GAGTC 2 cut(s) 412, 812
SetI ASST 8 cut(s) 121, 233, 248, 334, 367, 532, 615, 783
SfcI CTRYAG 1 cut(s) 774
SfuI TTCGAA 1 cut(s) 581
SinI GGWCC 1 cut(s) 899
SmiMI CAYNNNNRTG 1 cut(s) 170
SmlI CTYRAG 2 cut(s) 487, 517
SmoI CTYRAG 2 cut(s) 487, 517
Sse9I AATT 8 cut(s) 46, 150, 196, 213, 294, 370, 715, 743
SsiI CCGC 3 cut(s) 208, 734, 838
SspI AATATT 1 cut(s) 598
SspMI CTAG 3 cut(s) 362, 366, 449
StyI CCWWGG 1 cut(s) 609
TaaI ACNGT 2 cut(s) 707, 775
TaqI TCGA 4 cut(s) 11, 283, 581, 810
TasI AATT 8 cut(s) 46, 150, 196, 213, 294, 370, 715, 743
TatI WGTACW 1 cut(s) 174
TauI GCSGC 1 cut(s) 737
TfiI GAWTC 2 cut(s) 497, 692
Tru1I TTAA 3 cut(s) 54, 144, 293
Tru9I TTAA 3 cut(s) 54, 144, 293
TscAI CASTG 1 cut(s) 460
TseI GCWGC 3 cut(s) 399, 548, 605
TspDTI ATGAA 6 cut(s) 30, 510, 713, 736, 783, 888
TspGWI ACGGA 2 cut(s) 398, 483
TspRI CASTG 1 cut(s) 460
VpaK11BI GGWCC 1 cut(s) 899
VspI ATTAAT 1 cut(s) 293
XapI RAATTY 4 cut(s) 150, 370, 715, 743
XceI RCATGY 1 cut(s) 353
XmiI GTMKAC 1 cut(s) 846
XspI CTAG 3 cut(s) 362, 366, 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.