pycom01g06500

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
6864803 .. 6865195
393 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 393 bp
ATGATGAGTCTGATCCTGTTGGGGGTCCTGTTAAATAAAATAAGTAATGTATTACTCTTTCCTTTGTCTGTACATTTTAGCTTTTCCTCTTTGGCAGGTTGTGGTTTAATAACTGTCAGTGTTTTTCCCCTCATCCTATCTGATATTTTTGTGTATATTTTATTTGATTACAGATATCAGATGCCACTGGCTCTTGTTGGATTGATATCTTGTTTGGCACTGTGGGATGTTTTTAAGTTCTGTAGTGAAAGGTGGGGACTGGACCAATACCCAATAGTTCGGCAGTGCTTAATTCGTTTTGCTCAATGTGGTGAGTTGTTGACCCTGTGTTTGGGCAGTAGCAGTATTCTCTTGTGCATTTGTTCTGTTTACTTAGCATTCTCTTCTACATAA
Functional Annotation

Protein Analysis

131

Amino Acids

14.51

Weight (kDa)

6.5

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 86
AclWI GGATC 1 cut(s) 7
AfaI GTAC 1 cut(s) 72
AfiI CCNNNNNNNGG 2 cut(s) 22, 331
AluBI AGCT 1 cut(s) 81
AluI AGCT 1 cut(s) 81
AlwI GGATC 1 cut(s) 7
ArsI GACNNNNNNTTYG 2 cut(s) 313, 345
AspS9I GGNCC 2 cut(s) 25, 262
AsuHPI GGTGA 1 cut(s) 323
AvaII GGWCC 2 cut(s) 25, 262
BfmI CTRYAG 1 cut(s) 241
BfuAI ACCTGC 1 cut(s) 86
Bme18I GGWCC 2 cut(s) 25, 262
BmgT120I GGNCC 2 cut(s) 25, 262
BmiI GGNNCC 1 cut(s) 26
BmsI GCATC 1 cut(s) 171
BsaBI GATNNNNATC 1 cut(s) 205
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 331
Bse1I ACTGG 2 cut(s) 192, 264
Bse8I GATNNNNATC 1 cut(s) 205
BseGI GGATG 2 cut(s) 132, 232
BseJI GATNNNNATC 1 cut(s) 205
BseLI CCNNNNNNNGG 2 cut(s) 22, 331
BseNI ACTGG 2 cut(s) 192, 264
BslFI GGGAC 1 cut(s) 270
BslI CCNNNNNNNGG 2 cut(s) 22, 331
BsmFI GGGAC 1 cut(s) 270
BsmI GAATGC 1 cut(s) 377
Bsp1407I TGTACA 1 cut(s) 70
Bsp143I GATC 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 26
BspMI ACCTGC 1 cut(s) 86
BspPI GGATC 1 cut(s) 7
BsrGI TGTACA 1 cut(s) 70
BsrI ACTGG 2 cut(s) 192, 264
BssMI GATC 1 cut(s) 12
Bst4CI ACNGT 2 cut(s) 115, 222
Bst6I CTCTTC 1 cut(s) 388
BstAUI TGTACA 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 373
BstF5I GGATG 2 cut(s) 132, 232
BstKTI GATC 1 cut(s) 15
BstMBI GATC 1 cut(s) 12
BstSFI CTRYAG 1 cut(s) 241
BtsCI GGATG 2 cut(s) 132, 232
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 4 cut(s) 124, 185, 218, 290
BveI ACCTGC 1 cut(s) 86
Cfr13I GGNCC 2 cut(s) 25, 262
Csp6I GTAC 1 cut(s) 71
CviJI RGCY 2 cut(s) 81, 191
CviKI_1 RGCY 2 cut(s) 81, 191
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 1 cut(s) 373
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
Eam1104I CTCTTC 1 cut(s) 388
EarI CTCTTC 1 cut(s) 388
Eco32I GATATC 2 cut(s) 176, 207
Eco47I GGWCC 2 cut(s) 25, 262
EcoO109I RGGNCCY 1 cut(s) 25
EcoRV GATATC 2 cut(s) 176, 207
FaiI YATR 2 cut(s) 156, 391
FaqI GGGAC 1 cut(s) 270
FokI GGATG 2 cut(s) 119, 239
HincII GTYRAC 1 cut(s) 321
HindII GTYRAC 1 cut(s) 321
HinfI GANTC 1 cut(s) 7
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 2 cut(s) 321, 370
Hpy188I TCNGA 3 cut(s) 12, 142, 180
Hpy8I GTNNAC 2 cut(s) 321, 370
HpyCH4III ACNGT 2 cut(s) 115, 222
HpyCH4V TGCA 1 cut(s) 357
HpyF3I CTNAG 1 cut(s) 373
Kzo9I GATC 1 cut(s) 12
LpnPI CCDG 6 cut(s) 29, 41, 81, 173, 245, 338
LweI GCATC 1 cut(s) 171
MalI GATC 1 cut(s) 14
MboI GATC 1 cut(s) 12
MboII GAAGA 1 cut(s) 375
MluCI AATT 1 cut(s) 291
MlyI GAGTC 1 cut(s) 16
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 2 cut(s) 97, 140
MseI TTAA 4 cut(s) 32, 107, 234, 290
Mva1269I GAATGC 1 cut(s) 377
NdeII GATC 1 cut(s) 12
NlaIV GGNNCC 1 cut(s) 26
PctI GAATGC 1 cut(s) 377
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
PpuMI RGGWCCY 1 cut(s) 25
Psp5II RGGWCCY 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 26
PspPI GGNCC 2 cut(s) 25, 262
PspPPI RGGWCCY 1 cut(s) 25
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SaqAI TTAA 4 cut(s) 32, 107, 234, 290
Sau3AI GATC 1 cut(s) 12
Sau96I GGNCC 2 cut(s) 25, 262
SchI GAGTC 1 cut(s) 16
SetI ASST 3 cut(s) 83, 100, 254
SfaNI GCATC 1 cut(s) 171
SfcI CTRYAG 1 cut(s) 241
SgeI CNNG 9 cut(s) 28, 40, 108, 200, 206, 222, 272, 337, 364
SinI GGWCC 2 cut(s) 25, 262
Sse9I AATT 1 cut(s) 291
TaaI ACNGT 2 cut(s) 115, 222
TasI AATT 1 cut(s) 291
TatI WGTACW 1 cut(s) 70
Tru1I TTAA 4 cut(s) 32, 107, 234, 290
Tru9I TTAA 4 cut(s) 32, 107, 234, 290
TscAI CASTG 4 cut(s) 124, 192, 225, 290
TspRI CASTG 4 cut(s) 124, 192, 225, 290
VpaK11BI GGWCC 2 cut(s) 25, 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.