pycom01g06740

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
7245174 .. 7245900
727 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 501 bp
ATGGAGGAAAAGCTGCATGAAGTTCAGGATCTCAACCAAAGTGTTGAAAACCAGAATGACAATCTCCAGACACATTTTACTGAAGCGACTTGTAACCTCGATCACATTTCTCATAAACTGGAAGCCGTGAAGCCAGATGAGGAGGTCAAGGTCACAGGCTCATCAGAAACAAAAGAGGAATCTCTTGTCGAAACCAAGTTGCAGAAACAGCTTGAAGGAGAAGTAAATGCGGTTAATCCTGTTGCTGGATCCAAGGTACTGCAGGAAGCAAAGTCAGATGAGGAACTGAAGCCTACAGTTTCACTGCAAAAAGATGAAGAACTTCCGCCTGAAGTGAGAGCGTTAAAAGAGTCAACAGAACATAAGGAAATGGCAAAGTCTACTGATGGTTCTGTAAAACTACAGATGCTCTCAGTACTTCTGCCGGCAATCAAGGAAAAGAAGTTTCTCAATCCCCGGAAATTGAAAAGTCGGTTAGTCCTGTTGCTGGCTCCAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1

Protein Analysis

167

Amino Acids

18.66

Weight (kDa)

5.36

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NET2A PF25014 1 - 43 8e-14 NET2A-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 380
AciI CCGC 2 cut(s) 230, 326
AclWI GGATC 3 cut(s) 36, 243, 256
AcuI CTGAAG 3 cut(s) 102, 308, 351
AfaI GTAC 2 cut(s) 258, 417
AfiI CCNNNNNNNGG 2 cut(s) 245, 487
AgsI TTSAA 3 cut(s) 47, 215, 466
AluBI AGCT 2 cut(s) 13, 211
AluI AGCT 2 cut(s) 13, 211
AlwI GGATC 3 cut(s) 36, 243, 256
ApeKI GCWGC 1 cut(s) 13
Asp700I GAANNNNTTC 1 cut(s) 321
AsuC2I CCSGG 1 cut(s) 457
BamHI GGATCC 1 cut(s) 248
BccI CCATC 1 cut(s) 380
BceAI ACGGC 1 cut(s) 110
BcnI CCSGG 1 cut(s) 457
BfmI CTRYAG 3 cut(s) 260, 294, 401
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
BmcAI AGTACT 1 cut(s) 417
Bme1390I CCNGG 1 cut(s) 457
BmiI GGNNCC 2 cut(s) 250, 492
BmrFI CCNGG 1 cut(s) 457
BmsI GCATC 1 cut(s) 396
BpmI CTGGAG 1 cut(s) 50
BpuMI CCSGG 1 cut(s) 457
BsaJI CCNNGG 3 cut(s) 252, 455, 494
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 487
Bse118I RCCGGY 1 cut(s) 424
Bse1I ACTGG 1 cut(s) 123
BseDI CCNNGG 3 cut(s) 252, 455, 494
BseLI CCNNNNNNNGG 2 cut(s) 245, 487
BseMII CTCAG 1 cut(s) 426
BseNI ACTGG 1 cut(s) 123
BseRI GAGGAG 1 cut(s) 155
BsiSI CCGG 2 cut(s) 425, 457
BslI CCNNNNNNNGG 2 cut(s) 245, 487
Bsp143I GATC 3 cut(s) 28, 100, 248
BspACI CCGC 2 cut(s) 230, 326
BspCNI CTCAG 1 cut(s) 425
BspLI GGNNCC 2 cut(s) 250, 492
BspMAI CTGCAG 1 cut(s) 264
BspPI GGATC 3 cut(s) 36, 243, 256
BsrFI RCCGGY 1 cut(s) 424
BsrI ACTGG 1 cut(s) 123
BssAI RCCGGY 1 cut(s) 424
BssECI CCNNGG 3 cut(s) 252, 455, 494
BssMI GATC 3 cut(s) 28, 100, 248
BssT1I CCWWGG 2 cut(s) 252, 494
Bst4CI ACNGT 1 cut(s) 298
BstC8I GCNNGC 2 cut(s) 426, 489
BstDEI CTNAG 1 cut(s) 412
BstKTI GATC 3 cut(s) 31, 103, 251
BstMBI GATC 3 cut(s) 28, 100, 248
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 455
BstSFI CTRYAG 3 cut(s) 260, 294, 401
BstX2I RGATCY 2 cut(s) 28, 248
BstYI RGATCY 2 cut(s) 28, 248
BtsI GCAGTG 1 cut(s) 302
BtsIMutI CAGTG 1 cut(s) 302
Cac8I GCNNGC 2 cut(s) 426, 489
Cfr10I RCCGGY 1 cut(s) 424
Csp6I GTAC 2 cut(s) 257, 416
CviAII CATG 1 cut(s) 17
CviJI RGCY 7 cut(s) 13, 125, 133, 159, 211, 292, 491
CviKI_1 RGCY 7 cut(s) 13, 125, 133, 159, 211, 292, 491
CviQI GTAC 2 cut(s) 257, 416
DdeI CTNAG 1 cut(s) 412
DpnI GATC 3 cut(s) 30, 102, 250
DpnII GATC 3 cut(s) 28, 100, 248
EciI GGCGGA 1 cut(s) 315
Eco130I CCWWGG 2 cut(s) 252, 494
Eco57I CTGAAG 3 cut(s) 102, 308, 351
EcoT14I CCWWGG 2 cut(s) 252, 494
ErhI CCWWGG 2 cut(s) 252, 494
FaeI CATG 1 cut(s) 20
FaiI YATR 3 cut(s) 18, 114, 363
FatI CATG 1 cut(s) 16
FblI GTMKAC 1 cut(s) 380
Fnu4HI GCNGC 1 cut(s) 14
Fsp4HI GCNGC 1 cut(s) 14
GluI GCNGC 1 cut(s) 14
GsuI CTGGAG 1 cut(s) 50
HapII CCGG 2 cut(s) 425, 457
Hin1II CATG 1 cut(s) 20
HincII GTYRAC 1 cut(s) 354
HindII GTYRAC 1 cut(s) 354
HinfI GANTC 2 cut(s) 179, 350
HpaII CCGG 2 cut(s) 425, 457
Hpy166II GTNNAC 2 cut(s) 354, 381
Hpy188I TCNGA 2 cut(s) 166, 277
Hpy188III TCNNGA 2 cut(s) 26, 67
Hpy8I GTNNAC 2 cut(s) 354, 381
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4V TGCA 4 cut(s) 16, 202, 262, 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpyF3I CTNAG 1 cut(s) 412
Hsp92II CATG 1 cut(s) 20
KroI GCCGGC 1 cut(s) 424
KroNI GCCGGC 1 cut(s) 426
Kzo9I GATC 3 cut(s) 28, 100, 248
LmnI GCTCC 1 cut(s) 496
LweI GCATC 1 cut(s) 396
MaeIII GTNAC 2 cut(s) 92, 151
MalI GATC 3 cut(s) 30, 102, 250
MboI GATC 3 cut(s) 28, 100, 248
MboII GAAGA 1 cut(s) 329
MflI RGATCY 2 cut(s) 28, 248
MluCI AATT 1 cut(s) 461
MlyI GAGTC 1 cut(s) 359
MnlI CCTC 5 cut(s) 107, 133, 136, 169, 274
MroNI GCCGGC 1 cut(s) 424
MroXI GAANNNNTTC 1 cut(s) 321
MseI TTAA 2 cut(s) 234, 344
MspI CCGG 2 cut(s) 425, 457
MspR9I CCNGG 1 cut(s) 457
MwoI GCNNNNNNNGC 1 cut(s) 208
NaeI GCCGGC 1 cut(s) 426
NciI CCSGG 1 cut(s) 457
NdeII GATC 3 cut(s) 28, 100, 248
NgoMIV GCCGGC 1 cut(s) 424
NlaIII CATG 1 cut(s) 20
NlaIV GGNNCC 2 cut(s) 250, 492
NmuCI GTSAC 1 cut(s) 151
PdiI GCCGGC 1 cut(s) 426
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 179
PkrI GCNGC 1 cut(s) 15
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
PspN4I GGNNCC 2 cut(s) 250, 492
PstI CTGCAG 1 cut(s) 264
PsuI RGATCY 2 cut(s) 28, 248
RsaI GTAC 2 cut(s) 258, 417
RsaNI GTAC 2 cut(s) 257, 416
SaqAI TTAA 2 cut(s) 234, 344
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 3 cut(s) 28, 100, 248
ScaI AGTACT 1 cut(s) 417
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 1 cut(s) 457
SetI ASST 7 cut(s) 15, 99, 147, 153, 213, 258, 500
SfaNI GCATC 1 cut(s) 396
SfcI CTRYAG 3 cut(s) 260, 294, 401
Sse9I AATT 1 cut(s) 461
SsiI CCGC 2 cut(s) 230, 326
StyD4I CCNGG 1 cut(s) 455
StyI CCWWGG 2 cut(s) 252, 494
TaaI ACNGT 1 cut(s) 298
TaqI TCGA 2 cut(s) 99, 189
TasI AATT 1 cut(s) 461
TatI WGTACW 1 cut(s) 415
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 2 cut(s) 234, 344
Tru9I TTAA 2 cut(s) 234, 344
TscAI CASTG 1 cut(s) 309
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 2 cut(s) 33, 330
TspRI CASTG 1 cut(s) 309
XmiI GTMKAC 1 cut(s) 380
XmnI GAANNNNTTC 1 cut(s) 321
ZrmI AGTACT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.