pycom01g06950

Dehydrogenase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Reverse (-)
7540968 .. 7541283
316 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 213 bp
ATGAGTTTTCTTCATGTTTGTTTCTTTTTATATTGCAGAACCGCTGATAATAATGACATCAGCATCAAGATACTTTCTTGTGGAATTTGCCACTCGGACCTTCACTTTGCTAAGGATGAAGTTGGAATGACTATTTATCCCATCGCCCCAGGGCATGAGATTGTAGGCGAAGTGACAAAGGTTGGGTGCAATGTCACAAAGTTCAAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

71

Amino Acids

7.78

Weight (kDa)

6.37

Isoelectric Point (pI)

15.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 17 - 70 1.2e-12 Alcohol dehydrogenase GroES-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 42
AcsI RAATTY 1 cut(s) 84
AgsI TTSAA 1 cut(s) 205
AjnI CCWGG 1 cut(s) 148
ApoI RAATTY 1 cut(s) 84
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
AspS9I GGNCC 1 cut(s) 97
AvaII GGWCC 1 cut(s) 97
BccI CCATC 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 72
Bpu10I CCTNAGC 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 148, 149
Bse3DI GCAATG 1 cut(s) 196
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 2 cut(s) 148, 149
BseGI GGATG 1 cut(s) 121
BseMI GCAATG 1 cut(s) 196
BspACI CCGC 1 cut(s) 42
BsrDI GCAATG 1 cut(s) 196
BssECI CCNNGG 2 cut(s) 148, 149
Bst2UI CCWGG 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 121
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 148
BtgZI GCGATG 1 cut(s) 127
BtsCI GGATG 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 97
CviAII CATG 2 cut(s) 14, 155
DdeI CTNAG 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 148
FaeI CATG 2 cut(s) 17, 158
FaiI YATR 4 cut(s) 15, 31, 156, 211
FatI CATG 2 cut(s) 13, 154
FokI GGATG 1 cut(s) 128
Hin1II CATG 2 cut(s) 17, 158
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 67
HpyAV CCTTC 1 cut(s) 110
HpyCH4V TGCA 2 cut(s) 36, 189
HpyF3I CTNAG 1 cut(s) 111
Hsp92II CATG 2 cut(s) 17, 158
LpnPI CCDG 2 cut(s) 135, 162
LweI GCATC 1 cut(s) 72
MaeIII GTNAC 2 cut(s) 172, 193
MluCI AATT 1 cut(s) 84
MmeI TCCRAC 1 cut(s) 103
MspA1I CMGCKG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
NlaIII CATG 2 cut(s) 17, 158
NmuCI GTSAC 2 cut(s) 172, 193
PasI CCCWGGG 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspPI GGNCC 1 cut(s) 97
Sau96I GGNCC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 150
SetI ASST 2 cut(s) 102, 183
SfaNI GCATC 1 cut(s) 72
SgeI CNNG 7 cut(s) 26, 79, 90, 106, 161, 162, 167
SinI GGWCC 1 cut(s) 97
Sse9I AATT 1 cut(s) 84
SsiI CCGC 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 148
TasI AATT 1 cut(s) 84
TseFI GTSAC 2 cut(s) 172, 193
Tsp45I GTSAC 2 cut(s) 172, 193
TspDTI ATGAA 1 cut(s) 132
VpaK11BI GGWCC 1 cut(s) 97
XapI RAATTY 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.