pycom01g07010

Belongs to the peptidase M24B family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
7599448 .. 7599850
403 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 306 bp
ATGGATGTATCTTCTCTTAATGCTGCTATTGTCAACACCTTTAACTCTGCTTGTGAAAGATATTATGAAAGCCTTGAAAGTAAAAGAAAAAGTAAGAGTGACAACTCAAATGGTTGGTCTGGAGCACCGACCGGAGTTTACAGGGTGTCCCCTGTATCCTTGGCAAAGGCAGTTGAAAATGATCCTGAATTGGAAGACATGCAGAGTTGTCATTTAAGAGATGCTGCTGGTCTAGTGCAGTTTTGGGTTTGGATGGAGGAGAAAATTAATGAGAACTTGAAATTGACTAAGGTAGAGGTTGCATAA

Protein Analysis

102

Amino Acids

11.29

Weight (kDa)

4.93

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 176
AgsI TTSAA 3 cut(s) 77, 176, 280
Alw21I GWGCWC 1 cut(s) 127
AlwI GGATC 1 cut(s) 176
ApeKI GCWGC 2 cut(s) 23, 224
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
AseI ATTAAT 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 127
BbvI GCAGC 2 cut(s) 10, 211
BccI CCATC 1 cut(s) 247
BciVI GTATCC 1 cut(s) 166
BfaI CTAG 1 cut(s) 233
BfuI GTATCC 1 cut(s) 166
BisI GCNGC 2 cut(s) 24, 225
BlsI GCNGC 2 cut(s) 25, 226
BmsI GCATC 1 cut(s) 211
BpiI GAAGAC 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 159
BsaWI WCCGGW 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 2 cut(s) 10, 258
BseRI GAGGAG 1 cut(s) 272
BseXI GCAGC 2 cut(s) 10, 211
BsgI GTGCAG 1 cut(s) 257
Bsh1285I CGRYCG 1 cut(s) 132
BsiEI CGRYCG 1 cut(s) 132
BsiHKAI GWGCWC 1 cut(s) 127
BsiSI CCGG 1 cut(s) 132
BslFI GGGAC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 1 cut(s) 181
BspPI GGATC 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 1 cut(s) 181
BssT1I CCWWGG 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 288
BstF5I GGATG 2 cut(s) 10, 258
BstKTI GATC 1 cut(s) 184
BstMBI GATC 1 cut(s) 181
BstMCI CGRYCG 1 cut(s) 132
BstNSI RCATGY 1 cut(s) 202
BstV1I GCAGC 2 cut(s) 10, 211
BstV2I GAAGAC 1 cut(s) 201
BsuI GTATCC 1 cut(s) 166
BtsCI GGATG 2 cut(s) 10, 258
CviAII CATG 1 cut(s) 199
CviJI RGCY 1 cut(s) 72
CviKI_1 RGCY 1 cut(s) 72
DdeI CTNAG 1 cut(s) 288
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 1 cut(s) 202
FaiI YATR 3 cut(s) 66, 200, 304
FaqI GGGAC 1 cut(s) 133
FatI CATG 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 24, 225
FokI GGATG 2 cut(s) 17, 265
Fsp4HI GCNGC 2 cut(s) 24, 225
FspBI CTAG 1 cut(s) 233
GluI GCNGC 2 cut(s) 24, 225
GsuI CTGGAG 1 cut(s) 141
HapII CCGG 1 cut(s) 132
Hin1II CATG 1 cut(s) 202
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HpaII CCGG 1 cut(s) 132
Hpy166II GTNNAC 2 cut(s) 34, 139
Hpy188III TCNNGA 2 cut(s) 120, 185
Hpy8I GTNNAC 2 cut(s) 34, 139
HpyCH4V TGCA 3 cut(s) 202, 238, 302
HpyF3I CTNAG 1 cut(s) 288
Hsp92II CATG 1 cut(s) 202
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 6 cut(s) 105, 127, 145, 165, 198, 213
Lsp1109I GCAGC 2 cut(s) 10, 211
LweI GCATC 1 cut(s) 211
MaeI CTAG 1 cut(s) 233
MaeIII GTNAC 1 cut(s) 98
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 2 cut(s) 3, 206
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 3 cut(s) 188, 264, 281
MnlI CCTC 2 cut(s) 250, 289
MseI TTAA 4 cut(s) 18, 42, 215, 267
MspI CCGG 1 cut(s) 132
NdeII GATC 1 cut(s) 181
NlaIII CATG 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 98
NspI RCATGY 1 cut(s) 202
PkrI GCNGC 2 cut(s) 25, 226
PshBI ATTAAT 1 cut(s) 267
SaqAI TTAA 4 cut(s) 18, 42, 215, 267
SatI GCNGC 2 cut(s) 24, 225
Sau3AI GATC 1 cut(s) 181
SduI GDGCHC 1 cut(s) 127
SetI ASST 3 cut(s) 41, 294, 300
SfaNI GCATC 1 cut(s) 211
Sse9I AATT 3 cut(s) 188, 264, 281
SspMI CTAG 1 cut(s) 233
StyI CCWWGG 1 cut(s) 159
TasI AATT 3 cut(s) 188, 264, 281
Tru1I TTAA 4 cut(s) 18, 42, 215, 267
Tru9I TTAA 4 cut(s) 18, 42, 215, 267
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 2 cut(s) 23, 224
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 81
VspI ATTAAT 1 cut(s) 267
XceI RCATGY 1 cut(s) 202
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.