pycom01g07020

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Reverse (-)
7603995 .. 7606641
2647 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 870 bp
ATGGGAAAAATGGTGATGTCTAAAGAACAAGAACACCCCAAGAAAGCCTTTGGTTGGGCTGCCAGGGATTCATCTGGCGTTTTCTCTCCCTTCAAATTCTCAAGAAGGGAAACGGGCGACAAAGATGTAATATTCAGAGTGTTATACTGTGGGATATGTCATTCGGACCTCCACATGGCCAAGAATGAATGGGGAATTTCTACCTATCCATTGGTTCCCGGACATTGTACCAACCATCATGAAAATTACTGCCCCAAAGTGATACTCACTTATGGTGCCAAGTACTACGATGGAACCACCACATATGGAGGTTACTCTGACATCCTGGTGGCCAACGAGCACTTTGTAGTCCATATCCCAGACAACCTTCCCCTTGATGGAGCGGCTCCTCTCCTATGTGCTGGGATTACAACTTACAGCCCTTTGAGATATTTTGGACTTGACAAACCCGGTATCCATGTGGGTGCGGTGGGTTTAGGCGGTCTAGGCCATGTGGCTGTTAAGTTTGCTAAGGCTATGGGGGTTAAGCAATTGAACATCTCTGTGCTGATTCATTTTTGGTCAGCCGCGATGAAGATCAGATGCAGTATGAAGTGTTTACTTTGTAAACTGTGTAATGTCTTCGGTGGCTACTTATTGACAAGAGTACATTTTGCAATTGCAGGAAGGAAGATAGTAGCTGGGAGTGGCATTGGGGGCATGAAGGAGACGCAAGAGATGATTGATTTCACAGCCAAGAATAACATAACAGCTGATATTGAGGTTATCCCAATCGATTATGTGAACATTGCCATGGAGCGCCTTCTTAAAGCAGATGTCAGATATCGATTTGTCATTGATATTGGAAACACATTGAAGTCTACCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

290

Amino Acids

31.86

Weight (kDa)

8.95

Isoelectric Point (pI)

27.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 275
AccBSI CCGCTC 1 cut(s) 383
AccI GTMKAC 1 cut(s) 860
AccII CGCG 1 cut(s) 569
AciI CCGC 4 cut(s) 383, 467, 480, 567
AcoI YGGCCR 2 cut(s) 177, 330
AcsI RAATTY 2 cut(s) 95, 195
AfaI GTAC 3 cut(s) 229, 284, 648
AfiI CCNNNNNNNGG 3 cut(s) 54, 175, 377
AgsI TTSAA 3 cut(s) 94, 535, 856
AjnI CCWGG 2 cut(s) 62, 324
AluBI AGCT 2 cut(s) 680, 752
AluI AGCT 2 cut(s) 680, 752
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 1 cut(s) 701
AoxI GGCC 3 cut(s) 177, 330, 487
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 2 cut(s) 95, 195
AspLEI GCGC 1 cut(s) 801
AspS9I GGNCC 1 cut(s) 166
AsuC2I CCSGG 2 cut(s) 219, 450
AsuHPI GGTGA 1 cut(s) 25
AvaII GGWCC 1 cut(s) 166
BalI TGGCCA 2 cut(s) 179, 332
BanI GGYRCC 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 613
Bbv12I GWGCWC 1 cut(s) 342
BbvI GCAGC 1 cut(s) 46
BccI CCATC 3 cut(s) 243, 284, 371
BciT130I CCWGG 2 cut(s) 64, 326
BciVI GTATCC 1 cut(s) 464
BcnI CCSGG 2 cut(s) 219, 450
BcoDI GTCTC 1 cut(s) 701
BfaI CTAG 1 cut(s) 485
BfoI RGCGCY 1 cut(s) 802
BfuI GTATCC 1 cut(s) 464
BisI GCNGC 3 cut(s) 60, 384, 567
BlsI GCNGC 3 cut(s) 61, 385, 568
BmcAI AGTACT 1 cut(s) 284
Bme1390I CCNGG 4 cut(s) 64, 219, 326, 450
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 4 cut(s) 216, 277, 295, 387
BmrFI CCNGG 4 cut(s) 64, 219, 326, 450
BmsI GCATC 1 cut(s) 572
BpiI GAAGAC 1 cut(s) 613
Bpu10I CCTNAGC 1 cut(s) 510
BpuEI CTTGAG 1 cut(s) 85
BpuMI CCSGG 2 cut(s) 219, 450
Bsa29I ATCGAT 2 cut(s) 774, 826
BsaBI GATNNNNATC 1 cut(s) 575
BsaJI CCNNGG 2 cut(s) 63, 792
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 175, 377
Bse3DI GCAATG 1 cut(s) 786
Bse8I GATNNNNATC 1 cut(s) 575
BseBI CCWGG 2 cut(s) 64, 326
BseCI ATCGAT 2 cut(s) 774, 826
BseDI CCNNGG 2 cut(s) 63, 792
BseGI GGATG 1 cut(s) 321
BseJI GATNNNNATC 1 cut(s) 575
BseLI CCNNNNNNNGG 3 cut(s) 54, 175, 377
BseMI GCAATG 1 cut(s) 786
BseRI GAGGAG 1 cut(s) 378
BseXI GCAGC 1 cut(s) 46
BseYI CCCAGC 2 cut(s) 401, 680
Bsh1236I CGCG 1 cut(s) 569
BshFI GGCC 3 cut(s) 179, 332, 489
BshNI GGYRCC 1 cut(s) 275
BshVI ATCGAT 2 cut(s) 774, 826
BsiHKAI GWGCWC 1 cut(s) 342
BsiSI CCGG 2 cut(s) 219, 450
BslI CCNNNNNNNGG 3 cut(s) 54, 175, 377
BsmAI GTCTC 1 cut(s) 701
BsmBI CGTCTC 1 cut(s) 701
BsnI GGCC 3 cut(s) 179, 332, 489
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 1 cut(s) 576
Bsp19I CCATGG 1 cut(s) 792
BspACI CCGC 4 cut(s) 383, 467, 480, 567
BspANI GGCC 3 cut(s) 179, 332, 489
BspDI ATCGAT 2 cut(s) 774, 826
BspFNI CGCG 1 cut(s) 569
BspHI TCATGA 1 cut(s) 238
BspLI GGNNCC 4 cut(s) 216, 277, 295, 387
BspT107I GGYRCC 1 cut(s) 275
BsrBI CCGCTC 1 cut(s) 383
BsrDI GCAATG 1 cut(s) 786
BssECI CCNNGG 2 cut(s) 63, 792
BssMI GATC 1 cut(s) 576
BssT1I CCWWGG 1 cut(s) 792
Bst2UI CCWGG 2 cut(s) 64, 326
Bst4CI ACNGT 2 cut(s) 149, 612
BstDEI CTNAG 1 cut(s) 510
BstDSI CCRYGG 1 cut(s) 792
BstF5I GGATG 1 cut(s) 321
BstFNI CGCG 1 cut(s) 569
BstH2I RGCGCY 1 cut(s) 802
BstHHI GCGC 1 cut(s) 801
BstKTI GATC 1 cut(s) 579
BstMAI GTCTC 1 cut(s) 701
BstMBI GATC 1 cut(s) 576
BstMWI GCNNNNNNNGC 2 cut(s) 486, 696
BstNI CCWGG 2 cut(s) 64, 326
BstSCI CCNGG 4 cut(s) 62, 217, 324, 448
BstUI CGCG 1 cut(s) 569
BstV1I GCAGC 1 cut(s) 46
BstV2I GAAGAC 1 cut(s) 613
Bsu15I ATCGAT 2 cut(s) 774, 826
BsuI GTATCC 1 cut(s) 464
BsuRI GGCC 3 cut(s) 179, 332, 489
BsuTUI ATCGAT 2 cut(s) 774, 826
BtgI CCRYGG 1 cut(s) 792
BtgZI GCGATG 1 cut(s) 584
BtsCI GGATG 1 cut(s) 321
CciI TCATGA 1 cut(s) 238
CfoI GCGC 1 cut(s) 801
Cfr13I GGNCC 1 cut(s) 166
ClaI ATCGAT 2 cut(s) 774, 826
CseI GACGC 1 cut(s) 718
Csp6I GTAC 3 cut(s) 228, 283, 647
CviAII CATG 6 cut(s) 175, 239, 458, 491, 700, 793
CviQI GTAC 3 cut(s) 228, 283, 647
DdeI CTNAG 1 cut(s) 510
DpnI GATC 1 cut(s) 578
DpnII GATC 1 cut(s) 576
EaeI YGGCCR 2 cut(s) 177, 330
Eco130I CCWWGG 1 cut(s) 792
Eco32I GATATC 1 cut(s) 824
Eco47I GGWCC 1 cut(s) 166
EcoRII CCWGG 2 cut(s) 62, 324
EcoRV GATATC 1 cut(s) 824
EcoT14I CCWWGG 1 cut(s) 792
ErhI CCWWGG 1 cut(s) 792
Esp3I CGTCTC 1 cut(s) 701
FaeI CATG 6 cut(s) 178, 242, 461, 494, 703, 796
FalI AAGNNNNNCTT 3 cut(s) 32, 64, 848
FatI CATG 6 cut(s) 174, 238, 457, 490, 699, 792
FauNDI CATATG 1 cut(s) 304
FblI GTMKAC 1 cut(s) 860
Fnu4HI GCNGC 3 cut(s) 60, 384, 567
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 3 cut(s) 60, 384, 567
FspBI CTAG 1 cut(s) 485
GlaI GCGC 1 cut(s) 800
GluI GCNGC 3 cut(s) 60, 384, 567
GsaI CCCAGC 2 cut(s) 405, 684
HaeII RGCGCY 1 cut(s) 802
HaeIII GGCC 3 cut(s) 179, 332, 489
HapII CCGG 2 cut(s) 219, 450
HgaI GACGC 1 cut(s) 718
HhaI GCGC 1 cut(s) 801
Hin1II CATG 6 cut(s) 178, 242, 461, 494, 703, 796
Hin6I GCGC 1 cut(s) 799
HinP1I GCGC 1 cut(s) 799
HinfI GANTC 2 cut(s) 68, 550
HpaII CCGG 2 cut(s) 219, 450
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 4 cut(s) 599, 608, 784, 861
Hpy188I TCNGA 5 cut(s) 137, 166, 319, 581, 821
Hpy188III TCNNGA 2 cut(s) 102, 239
Hpy8I GTNNAC 4 cut(s) 599, 608, 784, 861
HpyAV CCTTC 6 cut(s) 99, 100, 377, 660, 697, 812
HpyCH4III ACNGT 2 cut(s) 149, 612
HpyCH4V TGCA 3 cut(s) 585, 656, 662
HpyF10VI GCNNNNNNNGC 2 cut(s) 486, 696
HpyF3I CTNAG 1 cut(s) 510
Hsp92II CATG 6 cut(s) 178, 242, 461, 494, 703, 796
HspAI GCGC 1 cut(s) 799
Kzo9I GATC 1 cut(s) 576
LmnI GCTCC 3 cut(s) 380, 391, 796
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 1 cut(s) 572
MaeI CTAG 1 cut(s) 485
MaeIII GTNAC 1 cut(s) 311
MalI GATC 1 cut(s) 578
MbiI CCGCTC 1 cut(s) 383
MboI GATC 1 cut(s) 576
MboII GAAGA 3 cut(s) 586, 613, 682
MfeI CAATTG 2 cut(s) 530, 657
MhlI GDGCHC 1 cut(s) 342
MlsI TGGCCA 2 cut(s) 179, 332
MluCI AATT 5 cut(s) 95, 195, 244, 530, 657
MluNI TGGCCA 2 cut(s) 179, 332
MnlI CCTC 4 cut(s) 179, 302, 399, 754
Mox20I TGGCCA 2 cut(s) 179, 332
MscI TGGCCA 2 cut(s) 179, 332
MseI TTAA 3 cut(s) 501, 525, 807
MslI CAYNNNNRTG 4 cut(s) 326, 462, 542, 791
Msp20I TGGCCA 2 cut(s) 179, 332
MspA1I CMGCKG 1 cut(s) 752
MspI CCGG 2 cut(s) 219, 450
MspR9I CCNGG 4 cut(s) 64, 219, 326, 450
MunI CAATTG 2 cut(s) 530, 657
MvaI CCWGG 2 cut(s) 64, 326
MvnI CGCG 1 cut(s) 569
MwoI GCNNNNNNNGC 2 cut(s) 486, 696
NciI CCSGG 2 cut(s) 219, 450
NcoI CCATGG 1 cut(s) 792
NdeI CATATG 1 cut(s) 304
NdeII GATC 1 cut(s) 576
NlaIII CATG 6 cut(s) 178, 242, 461, 494, 703, 796
NlaIV GGNNCC 4 cut(s) 216, 277, 295, 387
PagI TCATGA 1 cut(s) 238
PfeI GAWTC 2 cut(s) 68, 550
PfoI TCCNGGA 1 cut(s) 217
PkrI GCNGC 3 cut(s) 61, 385, 568
Psp6I CCWGG 2 cut(s) 62, 324
PspFI CCCAGC 2 cut(s) 401, 680
PspGI CCWGG 2 cut(s) 62, 324
PspN4I GGNNCC 4 cut(s) 216, 277, 295, 387
PspPI GGNCC 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 752
RsaI GTAC 3 cut(s) 229, 284, 648
RsaNI GTAC 3 cut(s) 228, 283, 647
RseI CAYNNNNRTG 4 cut(s) 326, 462, 542, 791
SaqAI TTAA 3 cut(s) 501, 525, 807
SatI GCNGC 3 cut(s) 60, 384, 567
Sau3AI GATC 1 cut(s) 576
Sau96I GGNCC 1 cut(s) 166
ScaI AGTACT 1 cut(s) 284
ScrFI CCNGG 4 cut(s) 64, 219, 326, 450
SduI GDGCHC 1 cut(s) 342
SetI ASST 8 cut(s) 171, 206, 313, 369, 682, 754, 765, 866
SfaNI GCATC 1 cut(s) 572
SinI GGWCC 1 cut(s) 166
SmiMI CAYNNNNRTG 4 cut(s) 326, 462, 542, 791
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
Sse9I AATT 5 cut(s) 95, 195, 244, 530, 657
SsiI CCGC 4 cut(s) 383, 467, 480, 567
SspI AATATT 1 cut(s) 132
SspMI CTAG 1 cut(s) 485
StyD4I CCNGG 4 cut(s) 62, 217, 324, 448
StyI CCWWGG 1 cut(s) 792
TaaI ACNGT 2 cut(s) 149, 612
TaqI TCGA 2 cut(s) 774, 826
TasI AATT 5 cut(s) 95, 195, 244, 530, 657
TatI WGTACW 2 cut(s) 282, 646
TauI GCSGC 2 cut(s) 386, 569
TfiI GAWTC 2 cut(s) 68, 550
Tru1I TTAA 3 cut(s) 501, 525, 807
Tru9I TTAA 3 cut(s) 501, 525, 807
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 7 cut(s) 60, 201, 255, 542, 587, 605, 716
VpaK11BI GGWCC 1 cut(s) 166
XapI RAATTY 2 cut(s) 95, 195
XmiI GTMKAC 1 cut(s) 860
XspI CTAG 1 cut(s) 485
ZrmI AGTACT 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.