Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

8057880 .. 8058690

Gene Structure 811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGATGCGATCTACAAAACAAAATCAAAGTGCAGATCATGTTTGCCAGGGCTTTCCATTCATTGTTCATGCACAACATGCAAGTTTTGAGGCATGTTCCATGTTGGAAACCTCTTCATTAGTGTACATTTGCAGGTGCATCCCACCCACTCCTGAAGAGCCGGAGAAATTCGGAACTCCGGACTTCACCATCTACAGTGCCGGACAGTTTCCCTGCAATCGTTACACTCAACACGTGACATCCTCTACCAGCATAGACATCAATCTTGCTAGGAAAGAAATGGTCATCCTCGGATCCATGGACGCCGGAAAGACAACTCCTTCAACAGGTCACAATAGGTTCTTAATTGGAGACGATGAGCACTGTTGGAGTGAGATTGGTGTGTCGAACATCGAAGGTGCTTGCTATACCAAGTGCATTGACCTCTCAAGGGAGAAGGAGCTTGACATTTTCAATGCCATCAAGTTTGGGGCAGTGTTGGAAAATGTTGTGTTCGACGAGCATGCCCGGGTGGTGGATTATTCAAACGAGTCTCTTACAGGTAACGAGAGAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

186

Amino Acids

20.59

Weight (kDa)

5.07

Isoelectric Point (pI)

33.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	46 - 103	1.3e-08	Phosphoenolpyruvate carboxykinase
PEPCK_ATP	PF01293	102 - 185	1.8e-33	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	123
Acc36I	ACCTGC	1 cut(s)	123
AccIII	TCCGGA	1 cut(s)	178
AclWI	GGATC	2 cut(s)	288, 301
AcsI	RAATTY	1 cut(s)	167
AcuI	CTGAAG	1 cut(s)	174
AcvI	CACGTG	1 cut(s)	235
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	3 cut(s)	326, 430, 514
AflIII	ACRYGT	1 cut(s)	232
AgsI	TTSAA	3 cut(s)	324, 454, 525
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	1 cut(s)	442
AluI	AGCT	1 cut(s)	442
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	2 cut(s)	345, 537
AlwI	GGATC	2 cut(s)	288, 301
Ama87I	CYCGRG	1 cut(s)	507
Aor13HI	TCCGGA	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	167
AsuC2I	CCSGG	2 cut(s)	508, 509
AsuHPI	GGTGA	1 cut(s)	178
AvaI	CYCGRG	1 cut(s)	507
BamHI	GGATCC	1 cut(s)	293
BbrPI	CACGTG	1 cut(s)	235
Bbv12I	GWGCWC	1 cut(s)	363
BccI	CCATC	2 cut(s)	197, 467
BcgI	CGANNNNNNTGC	2 cut(s)	485, 519
BciT130I	CCWGG	1 cut(s)	47
BcnI	CCSGG	2 cut(s)	508, 509
BcoDI	GTCTC	2 cut(s)	345, 537
BfaI	CTAG	1 cut(s)	270
BfmI	CTRYAG	1 cut(s)	193
BfuAI	ACCTGC	1 cut(s)	123
Bme1390I	CCNGG	3 cut(s)	47, 508, 509
BmeT110I	CYCGRG	1 cut(s)	507
BmiI	GGNNCC	1 cut(s)	295
BmrFI	CCNGG	3 cut(s)	47, 508, 509
BmsI	GCATC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	412
BpuMI	CCSGG	2 cut(s)	508, 509
BsaAI	YACGTR	1 cut(s)	235
BsaHI	GRCGYC	1 cut(s)	303
BsaJI	CCNNGG	4 cut(s)	46, 289, 297, 507
BsaWI	WCCGGW	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	3 cut(s)	326, 430, 514
BseAI	TCCGGA	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	4 cut(s)	46, 289, 297, 507
BseGI	GGATG	3 cut(s)	138, 239, 285
BseLI	CCNNNNNNNGG	3 cut(s)	326, 430, 514
BsgI	GTGCAG	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	363
BsiHKCI	CYCGRG	1 cut(s)	507
BsiSI	CCGG	5 cut(s)	161, 179, 201, 306, 508
BslI	CCNNNNNNNGG	3 cut(s)	326, 430, 514
BsmAI	GTCTC	2 cut(s)	345, 537
BsmBI	CGTCTC	1 cut(s)	345
BsoBI	CYCGRG	1 cut(s)	507
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp13I	TCCGGA	1 cut(s)	178
Bsp1407I	TGTACA	1 cut(s)	123
Bsp143I	GATC	3 cut(s)	8, 34, 293
Bsp19I	CCATGG	1 cut(s)	297
BspEI	TCCGGA	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	123
BspPI	GGATC	2 cut(s)	288, 301
BspQI	GCTCTTC	1 cut(s)	150
BsrGI	TGTACA	1 cut(s)	123
BssECI	CCNNGG	4 cut(s)	46, 289, 297, 507
BssMI	GATC	3 cut(s)	8, 34, 293
BssNI	GRCGYC	1 cut(s)	303
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	3 cut(s)	197, 207, 365
Bst6I	CTCTTC	2 cut(s)	118, 150
BstACI	GRCGYC	1 cut(s)	303
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstAUI	TGTACA	1 cut(s)	123
BstBAI	YACGTR	1 cut(s)	235
BstC8I	GCNNGC	2 cut(s)	403, 504
BstDSI	CCRYGG	1 cut(s)	297
BstENI	CCTNNNNNAGG	1 cut(s)	324
BstF5I	GGATG	3 cut(s)	138, 239, 285
BstKTI	GATC	3 cut(s)	11, 37, 296
BstMAI	GTCTC	2 cut(s)	345, 537
BstMBI	GATC	3 cut(s)	8, 34, 293
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	47
BstNSI	RCATGY	3 cut(s)	80, 96, 506
BstSCI	CCNGG	3 cut(s)	45, 506, 507
BstSFI	CTRYAG	1 cut(s)	193
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	3 cut(s)	138, 239, 285
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	3 cut(s)	202, 361, 480
BveI	ACCTGC	1 cut(s)	123
Cac8I	GCNNGC	2 cut(s)	403, 504
Cfr9I	CCCGGG	1 cut(s)	507
CseI	GACGC	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	7 cut(s)	38, 68, 77, 93, 100, 298, 503
CviJI	RGCY	3 cut(s)	51, 160, 442
CviKI_1	RGCY	3 cut(s)	51, 160, 442
CviQI	GTAC	1 cut(s)	124
DpnI	GATC	3 cut(s)	10, 36, 295
DpnII	GATC	3 cut(s)	8, 34, 293
Eam1104I	CTCTTC	2 cut(s)	118, 150
EarI	CTCTTC	2 cut(s)	118, 150
Eco130I	CCWWGG	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	174
Eco72I	CACGTG	1 cut(s)	235
Eco88I	CYCGRG	1 cut(s)	507
EcoNI	CCTNNNNNAGG	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
Esp3I	CGTCTC	1 cut(s)	345
FaeI	CATG	7 cut(s)	41, 71, 80, 96, 103, 301, 506
FaiI	YATR	9 cut(s)	39, 69, 78, 94, 101, 254, 299, 408, 504
FatI	CATG	7 cut(s)	37, 67, 76, 92, 99, 297, 502
FokI	GGATG	3 cut(s)	125, 226, 272
FspBI	CTAG	1 cut(s)	270
HapII	CCGG	5 cut(s)	161, 179, 201, 306, 508
HgaI	GACGC	1 cut(s)	311
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	7 cut(s)	41, 71, 80, 96, 103, 301, 506
HinfI	GANTC	1 cut(s)	530
HpaII	CCGG	5 cut(s)	161, 179, 201, 306, 508
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	2 cut(s)	173, 293
Hpy188III	TCNNGA	2 cut(s)	152, 179
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	1 cut(s)	500
HpyAV	CCTTC	3 cut(s)	330, 389, 430
HpyCH4III	ACNGT	3 cut(s)	197, 207, 365
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	7 cut(s)	32, 71, 80, 132, 138, 216, 417
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	7 cut(s)	41, 71, 80, 96, 103, 301, 506
Kpn2I	TCCGGA	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	8, 34, 293
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	1 cut(s)	439
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	4 cut(s)	221, 235, 329, 542
MalI	GATC	3 cut(s)	10, 36, 295
MboI	GATC	3 cut(s)	8, 34, 293
MboII	GAAGA	2 cut(s)	105, 167
MflI	RGATCY	1 cut(s)	293
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	2 cut(s)	167, 345
MlyI	GAGTC	1 cut(s)	539
MmeI	TCCRAC	3 cut(s)	84, 347, 459
MnlI	CCTC	5 cut(s)	82, 121, 253, 299, 434
MroI	TCCGGA	1 cut(s)	178
MseI	TTAA	1 cut(s)	344
MspI	CCGG	5 cut(s)	161, 179, 201, 306, 508
MspR9I	CCNGG	3 cut(s)	47, 508, 509
MvaI	CCWGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	77
NciI	CCSGG	2 cut(s)	508, 509
NcoI	CCATGG	1 cut(s)	297
NdeII	GATC	3 cut(s)	8, 34, 293
NlaIII	CATG	7 cut(s)	41, 71, 80, 96, 103, 301, 506
NlaIV	GGNNCC	1 cut(s)	295
NmuCI	GTSAC	2 cut(s)	235, 329
NspI	RCATGY	3 cut(s)	80, 96, 506
PaeI	GCATGC	1 cut(s)	506
PaqCI	CACCTGC	1 cut(s)	123
PciSI	GCTCTTC	1 cut(s)	150
PleI	GAGTC	1 cut(s)	538
PmaCI	CACGTG	1 cut(s)	235
PmlI	CACGTG	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	538
Ppu21I	YACGTR	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	45
PspCI	CACGTG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	293
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	344
Sau3AI	GATC	3 cut(s)	8, 34, 293
SchI	GAGTC	1 cut(s)	539
ScrFI	CCNGG	3 cut(s)	47, 508, 509
SduI	GDGCHC	1 cut(s)	363
SetI	ASST	9 cut(s)	113, 137, 237, 331, 341, 400, 426, 444, 544
SfaNI	GCATC	1 cut(s)	147
SfcI	CTRYAG	1 cut(s)	193
SmaI	CCCGGG	1 cut(s)	509
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
SphI	GCATGC	1 cut(s)	506
Sse9I	AATT	2 cut(s)	167, 345
SspMI	CTAG	1 cut(s)	270
StyD4I	CCNGG	3 cut(s)	45, 506, 507
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	3 cut(s)	197, 207, 365
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	3 cut(s)	386, 393, 495
TasI	AATT	2 cut(s)	167, 345
TatI	WGTACW	1 cut(s)	123
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TscAI	CASTG	3 cut(s)	202, 368, 480
TseFI	GTSAC	2 cut(s)	235, 329
Tsp45I	GTSAC	2 cut(s)	235, 329
TspDTI	ATGAA	3 cut(s)	49, 56, 105
TspMI	CCCGGG	1 cut(s)	507
TspRI	CASTG	3 cut(s)	202, 368, 480
XagI	CCTNNNNNAGG	1 cut(s)	324
XapI	RAATTY	1 cut(s)	167
XceI	RCATGY	3 cut(s)	80, 96, 506
XmaI	CCCGGG	1 cut(s)	507
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.