pycom01g07410

elicitor-responsive protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Reverse (-)
8317774 .. 8320106
2333 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 942 bp
ATGCCTCACGGAACGCTTGAAGTTCTTCTTGTCAGTGCCAAAGGCCTCGACAACAATGATTTTCTCGGTAACATGGATCCCTATGTTATTTTAACTGTAAGGACCCAAGACAAGAAAAGCACTGTCGTCTCAGGGCAAGGATCTGAACCAGAATGGAACGAGACCTTTTCCTTTACAGTCTCCGACGATGTTGATGAACTTCGCTTGAAAATAATGGACAAAGATACCTTTAGCTCTGATGATTTTATTGGAGAAGCAACGGTTGCTTTAGAGCCGTTGTTCGCTGAAGGAAGCCTTCCACCAACTCCATACAATGTTGTCAATCAGGACAAGGAATATAGTGGAGAGATTAAAGTTGGACTCACTTTTACTCTTGAGAGAAGCGGCCACGACGACAATTCTGGAGACTATGGTGACGTGGAGAGCTATGGTGGTGGGAGGAAAGAATCAAATAAAGGTGAGGAAAGGTATGGTGGTGGTGCTGGTGGTGGCGGTGGCTATGGTGGAGGCGGAGGTGGCTATGGTGATAGCGGTGGTGGCTATGGTGGAGGTGCTGGTGGTGGGAGGAAAGGATCACATAAAGGTGAGGAAAGGTATGGTGGTGGTGGTGGTGGCGGCGACAGTGATTATGGTGGAAGAGGCGGCGGCTATGGTGGAGGCGGAGGTGGCTATGGTGATAGTGGTGGTGGCTATGGTGGAGGTGGTGGTGGCTATGGAAATAGTGGCGGCGGCTATGGTGGAGGTGGCGACGGCTACGGCGATCGTGGTGGTGGCCATGGCGGTGGTAGTGGTGGCTATGGCGATGGCGGCGGCTATGAAGGTGGTGGCGGTGGCCTCGGTGGTGGTGGTAGTAGTTATGGCAGTGGTGGTGGATGGAAAGAATCATCTAAATCTGAGGACAGCTCTGGTGGATGGAAAGAATCCTCCACATACAGAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

314

Amino Acids

30.64

Weight (kDa)

4.46

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 4 - 97 2.5e-23 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 71, 84, 148, 580
AcoI YGGCCR 2 cut(s) 385, 772
AcuI CTGAAG 1 cut(s) 306
AgsI TTSAA 2 cut(s) 20, 208
AjiI CACGTC 1 cut(s) 418
AluBI AGCT 3 cut(s) 234, 426, 903
AluI AGCT 3 cut(s) 234, 426, 903
Alw26I GTCTC 4 cut(s) 133, 155, 184, 399
AlwI GGATC 4 cut(s) 71, 84, 148, 580
AoxI GGCC 4 cut(s) 43, 385, 772, 832
Asp700I GAANNNNTTC 1 cut(s) 24
AspS9I GGNCC 1 cut(s) 102
AsuHPI GGTGA 5 cut(s) 425, 470, 536, 596, 686
AvaII GGWCC 1 cut(s) 102
BalI TGGCCA 1 cut(s) 774
BamHI GGATCC 1 cut(s) 76
BccI CCATC 3 cut(s) 797, 867, 906
BceAI ACGGC 3 cut(s) 259, 766, 772
BcoDI GTCTC 4 cut(s) 133, 155, 184, 399
BisI GCNGC 8 cut(s) 385, 616, 643, 646, 727, 730, 808, 811
BlsI GCNGC 8 cut(s) 386, 617, 644, 647, 728, 731, 809, 812
Bme18I GGWCC 1 cut(s) 102
BmgBI CACGTC 1 cut(s) 418
BmgT120I GGNCC 1 cut(s) 102
BmiI GGNNCC 2 cut(s) 78, 104
BplI GAGNNNNNCTC 2 cut(s) 887, 919
BpmI CTGGAG 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 395
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 2 cut(s) 775, 835
BseDI CCNNGG 2 cut(s) 775, 835
BseGI GGATG 2 cut(s) 878, 917
BseMII CTCAG 2 cut(s) 144, 885
Bsh1285I CGRYCG 1 cut(s) 763
BshFI GGCC 4 cut(s) 45, 387, 774, 834
BsiEI CGRYCG 1 cut(s) 763
BsmAI GTCTC 4 cut(s) 133, 155, 184, 399
BsmBI CGTCTC 1 cut(s) 133
BsnI GGCC 4 cut(s) 45, 387, 774, 834
Bso31I GGTCTC 1 cut(s) 155
Bsp143I GATC 4 cut(s) 76, 140, 572, 760
Bsp19I CCATGG 1 cut(s) 775
BspANI GGCC 4 cut(s) 45, 387, 774, 834
BspCNI CTCAG 2 cut(s) 143, 886
BspLI GGNNCC 2 cut(s) 78, 104
BspPI GGATC 4 cut(s) 71, 84, 148, 580
BspTNI GGTCTC 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 775, 835
BssMI GATC 4 cut(s) 76, 140, 572, 760
BssT1I CCWWGG 1 cut(s) 775
Bst4CI ACNGT 5 cut(s) 97, 124, 178, 262, 623
Bst6I CTCTTC 1 cut(s) 631
BstAPI GCANNNNNTGC 1 cut(s) 263
BstDEI CTNAG 2 cut(s) 130, 894
BstDSI CCRYGG 1 cut(s) 775
BstF5I GGATG 2 cut(s) 878, 917
BstKTI GATC 4 cut(s) 79, 143, 575, 763
BstMAI GTCTC 4 cut(s) 133, 155, 184, 399
BstMBI GATC 4 cut(s) 76, 140, 572, 760
BstMCI CGRYCG 1 cut(s) 763
BstMWI GCNNNNNNNGC 5 cut(s) 263, 516, 537, 666, 807
BstX2I RGATCY 2 cut(s) 76, 140
BstXI CCANNNNNNTGG 1 cut(s) 782
BstYI RGATCY 2 cut(s) 76, 140
BsuRI GGCC 4 cut(s) 45, 387, 774, 834
BtgI CCRYGG 1 cut(s) 775
BtgZI GCGATG 1 cut(s) 816
BtrI CACGTC 1 cut(s) 418
BtsCI GGATG 2 cut(s) 878, 917
BtsI GCAGTG 1 cut(s) 868
BtsIMutI CAGTG 4 cut(s) 40, 120, 628, 868
Cfr13I GGNCC 1 cut(s) 102
CviAII CATG 2 cut(s) 73, 776
DdeI CTNAG 2 cut(s) 130, 894
DpnI GATC 4 cut(s) 78, 142, 574, 762
DpnII GATC 4 cut(s) 76, 140, 572, 760
EaeI YGGCCR 2 cut(s) 385, 772
Eam1104I CTCTTC 1 cut(s) 631
EarI CTCTTC 1 cut(s) 631
EciI GGCGGA 2 cut(s) 525, 675
Eco130I CCWWGG 1 cut(s) 775
Eco147I AGGCCT 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 306
EcoO109I RGGNCCY 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 775
ErhI CCWWGG 1 cut(s) 775
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 2 cut(s) 76, 779
FalI AAGNNNNNCTT 4 cut(s) 12, 44, 279, 311
FatI CATG 2 cut(s) 72, 775
Fnu4HI GCNGC 8 cut(s) 385, 616, 643, 646, 727, 730, 808, 811
FokI GGATG 2 cut(s) 885, 924
Fsp4HI GCNGC 8 cut(s) 385, 616, 643, 646, 727, 730, 808, 811
GluI GCNGC 8 cut(s) 385, 616, 643, 646, 727, 730, 808, 811
GsuI CTGGAG 1 cut(s) 423
HaeIII GGCC 4 cut(s) 45, 387, 774, 834
Hin1II CATG 2 cut(s) 76, 779
HinfI GANTC 4 cut(s) 360, 446, 881, 920
HphI GGTGA 5 cut(s) 425, 470, 536, 596, 686
Hpy188I TCNGA 4 cut(s) 145, 184, 238, 895
Hpy188III TCNNGA 3 cut(s) 326, 374, 402
Hpy99I CGWCG 3 cut(s) 188, 395, 752
HpyAV CCTTC 3 cut(s) 281, 305, 812
HpyCH4III ACNGT 5 cut(s) 97, 124, 178, 262, 623
HpyCH4IV ACGT 1 cut(s) 417
HpyF10VI GCNNNNNNNGC 5 cut(s) 263, 516, 537, 666, 807
HpyF3I CTNAG 2 cut(s) 130, 894
HpySE526I ACGT 1 cut(s) 417
Hsp92II CATG 2 cut(s) 76, 779
Kzo9I GATC 4 cut(s) 76, 140, 572, 760
LpnPI CCDG 7 cut(s) 117, 162, 311, 387, 468, 540, 891
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 2 cut(s) 68, 413
MalI GATC 4 cut(s) 78, 142, 574, 762
MboI GATC 4 cut(s) 76, 140, 572, 760
MboII GAAGA 2 cut(s) 17, 648
MflI RGATCY 2 cut(s) 76, 140
MlsI TGGCCA 1 cut(s) 774
MluCI AATT 1 cut(s) 397
MluNI TGGCCA 1 cut(s) 774
MlyI GAGTC 1 cut(s) 354
MmeI TCCRAC 2 cut(s) 207, 337
Mox20I TGGCCA 1 cut(s) 774
MroXI GAANNNNTTC 1 cut(s) 24
MscI TGGCCA 1 cut(s) 774
MseI TTAA 2 cut(s) 92, 351
MslI CAYNNNNRTG 2 cut(s) 582, 780
Msp20I TGGCCA 1 cut(s) 774
MwoI GCNNNNNNNGC 5 cut(s) 263, 516, 537, 666, 807
NcoI CCATGG 1 cut(s) 775
NdeII GATC 4 cut(s) 76, 140, 572, 760
NlaIII CATG 2 cut(s) 76, 779
NlaIV GGNNCC 2 cut(s) 78, 104
NmuCI GTSAC 1 cut(s) 413
PceI AGGCCT 1 cut(s) 45
PcsI WCGNNNNNNNCGW 1 cut(s) 756
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 3 cut(s) 446, 881, 920
PkrI GCNGC 8 cut(s) 386, 617, 644, 647, 728, 731, 809, 812
Ple19I CGATCG 1 cut(s) 763
PleI GAGTC 1 cut(s) 354
PpsI GAGTC 1 cut(s) 354
PpuMI RGGWCCY 1 cut(s) 102
Psp5II RGGWCCY 1 cut(s) 102
PspN4I GGNNCC 2 cut(s) 78, 104
PspPI GGNCC 1 cut(s) 102
PspPPI RGGWCCY 1 cut(s) 102
PsuI RGATCY 2 cut(s) 76, 140
PvuI CGATCG 1 cut(s) 763
RseI CAYNNNNRTG 2 cut(s) 582, 780
SaqAI TTAA 2 cut(s) 92, 351
SatI GCNGC 8 cut(s) 385, 616, 643, 646, 727, 730, 808, 811
Sau3AI GATC 4 cut(s) 76, 140, 572, 760
Sau96I GGNCC 1 cut(s) 102
SchI GAGTC 1 cut(s) 354
SinI GGWCC 1 cut(s) 102
SmiMI CAYNNNNRTG 2 cut(s) 582, 780
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 1 cut(s) 397
SseBI AGGCCT 1 cut(s) 45
StuI AGGCCT 1 cut(s) 45
StyI CCWWGG 1 cut(s) 775
TaaI ACNGT 5 cut(s) 97, 124, 178, 262, 623
TaiI ACGT 1 cut(s) 420
TaqI TCGA 1 cut(s) 48
TasI AATT 1 cut(s) 397
TauI GCSGC 8 cut(s) 387, 618, 645, 648, 729, 732, 810, 813
TfiI GAWTC 3 cut(s) 446, 881, 920
Tru1I TTAA 2 cut(s) 92, 351
Tru9I TTAA 2 cut(s) 92, 351
TscAI CASTG 4 cut(s) 40, 127, 628, 868
TseFI GTSAC 1 cut(s) 413
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 2 cut(s) 210, 831
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 4 cut(s) 40, 127, 628, 868
VpaK11BI GGWCC 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.