pycom01g07630

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
8577872 .. 8578977
1106 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 303 bp
ATGCCACATATGTCTTCCCATGTGGTAAATGATGCATACAATAACCTTATACAGAGTTATGTTGCTGCAGATTTTAGGCAGATTGGTAACCCTCTCGGTGATCATGACATAGGGCTATTTAGCATTATTTATGGCTTATTGGGTCATGATGTTCTTGCATACTTGCAATCTAATCTTTTTGAAAATACCATAGCAGATCCTGAGTTCTGGACCTGGTTAGCCATGGCGCATGCACTCGGGACAGCATATCTTGGAACTGAGAAAAGAATTATGGAGAAATCAAACAATCGTCGGATCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

101

Amino Acids

11.25

Weight (kDa)

5.58

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 191, 302
AgsI TTSAA 1 cut(s) 182
AjnI CCWGG 1 cut(s) 212
AlwI GGATC 2 cut(s) 191, 302
AlwNI CAGNNNCTG 1 cut(s) 200
Ama87I CYCGRG 1 cut(s) 236
ApeKI GCWGC 1 cut(s) 65
AspLEI GCGC 1 cut(s) 229
AspS9I GGNCC 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 110
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 6
BbvI GCAGC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 214
BclI TGATCA 1 cut(s) 100
BfmI CTRYAG 1 cut(s) 66
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme1390I CCNGG 1 cut(s) 214
Bme18I GGWCC 1 cut(s) 210
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 210
BmrFI CCNGG 1 cut(s) 214
BmsI GCATC 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 222
BseBI CCWGG 1 cut(s) 214
BseDI CCNNGG 1 cut(s) 222
BseMII CTCAG 2 cut(s) 192, 249
BseXI GCAGC 1 cut(s) 52
BsiHKCI CYCGRG 1 cut(s) 236
BslFI GGGAC 1 cut(s) 253
BsmFI GGGAC 1 cut(s) 253
BsoBI CYCGRG 1 cut(s) 236
Bsp143I GATC 3 cut(s) 100, 196, 294
Bsp19I CCATGG 1 cut(s) 222
BspCNI CTCAG 2 cut(s) 193, 250
BspHI TCATGA 2 cut(s) 103, 145
BspMAI CTGCAG 1 cut(s) 70
BspPI GGATC 2 cut(s) 191, 302
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 3 cut(s) 100, 196, 294
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 2 cut(s) 201, 258
BstDSI CCRYGG 1 cut(s) 222
BstEII GGTNACC 1 cut(s) 86
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 3 cut(s) 103, 199, 297
BstMBI GATC 3 cut(s) 100, 196, 294
BstNI CCWGG 1 cut(s) 214
BstNSI RCATGY 1 cut(s) 233
BstPI GGTNACC 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 212
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 1 cut(s) 52
BstV2I GAAGAC 1 cut(s) 6
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BtgI CCRYGG 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 231
CaiI CAGNNNCTG 1 cut(s) 200
CciI TCATGA 2 cut(s) 103, 145
CfoI GCGC 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 210
CsiI ACCWGGT 1 cut(s) 212
CviAII CATG 5 cut(s) 20, 104, 146, 223, 230
CviJI RGCY 3 cut(s) 115, 135, 221
CviKI_1 RGCY 3 cut(s) 115, 135, 221
DdeI CTNAG 2 cut(s) 201, 258
DpnI GATC 3 cut(s) 102, 198, 296
DpnII GATC 3 cut(s) 100, 196, 294
Eco130I CCWWGG 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 210
Eco88I CYCGRG 1 cut(s) 236
Eco91I GGTNACC 1 cut(s) 86
EcoO65I GGTNACC 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 212
EcoT14I CCWWGG 1 cut(s) 222
EcoT22I ATGCAT 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 5 cut(s) 23, 107, 149, 226, 233
FaqI GGGAC 1 cut(s) 253
FatI CATG 5 cut(s) 19, 103, 145, 222, 229
FauNDI CATATG 1 cut(s) 9
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 66
GlaI GCGC 1 cut(s) 228
GluI GCNGC 1 cut(s) 66
HhaI GCGC 1 cut(s) 229
Hin1II CATG 5 cut(s) 23, 107, 149, 226, 233
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HphI GGTGA 1 cut(s) 110
Hpy188I TCNGA 2 cut(s) 294, 299
Hpy188III TCNNGA 5 cut(s) 104, 146, 200, 208, 238
Hpy99I CGWCG 1 cut(s) 294
HpyCH4V TGCA 5 cut(s) 35, 68, 158, 166, 233
HpyF3I CTNAG 2 cut(s) 201, 258
Hsp92II CATG 5 cut(s) 23, 107, 149, 226, 233
HspAI GCGC 1 cut(s) 227
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 3 cut(s) 100, 196, 294
LpnPI CCDG 4 cut(s) 193, 199, 213, 226
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 1 cut(s) 22
MabI ACCWGGT 1 cut(s) 212
MaeIII GTNAC 1 cut(s) 86
MalI GATC 3 cut(s) 102, 198, 296
MboI GATC 3 cut(s) 100, 196, 294
MboII GAAGA 1 cut(s) 6
MflI RGATCY 1 cut(s) 196
MluCI AATT 1 cut(s) 267
MmeI TCCRAC 1 cut(s) 272
MnlI CCTC 1 cut(s) 102
Mph1103I ATGCAT 1 cut(s) 37
MspR9I CCNGG 1 cut(s) 214
MvaI CCWGG 1 cut(s) 214
NcoI CCATGG 1 cut(s) 222
NdeI CATATG 1 cut(s) 9
NdeII GATC 3 cut(s) 100, 196, 294
NlaIII CATG 5 cut(s) 23, 107, 149, 226, 233
NsiI ATGCAT 1 cut(s) 37
NspI RCATGY 1 cut(s) 233
PaeI GCATGC 1 cut(s) 233
PagI TCATGA 2 cut(s) 103, 145
PkrI GCNGC 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 212
PspEI GGTNACC 1 cut(s) 86
PspGI CCWGG 1 cut(s) 212
PspPI GGNCC 1 cut(s) 210
PstI CTGCAG 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 200
PsuI RGATCY 1 cut(s) 196
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 3 cut(s) 100, 196, 294
Sau96I GGNCC 1 cut(s) 210
ScrFI CCNGG 1 cut(s) 214
SetI ASST 2 cut(s) 48, 215
SexAI ACCWGGT 1 cut(s) 212
SfaNI GCATC 1 cut(s) 22
SfcI CTRYAG 1 cut(s) 66
SinI GGWCC 1 cut(s) 210
SphI GCATGC 1 cut(s) 233
Sse9I AATT 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 212
StyI CCWWGG 1 cut(s) 222
TasI AATT 1 cut(s) 267
TseI GCWGC 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 210
XceI RCATGY 1 cut(s) 233
Zsp2I ATGCAT 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.