pycom01g07730

phosphatase 2C

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
8709888 .. 8710139
252 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 252 bp
ATGTTGGTGGTGGTCAATGTTGGGAGGTCTAGGGCCGTTATCTGTTGTAAAAATGGAATGCTTAAGAAAGTGTCAGTTGTTTATGACAAGAGAGGCGGTTCTTTCGGGGCATCATGGTTAACAAGGGTGTTCGGTGTTACACACATGAAGATATATATCAGTTGCGATTCTCACGGGGTTGTGGAGACGATAGATGATGAAATAGAGTTCCTTGTGTTGGCATACGGAAGTGATGTCCAACCAAAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.11

Weight (kDa)

8.52

Isoelectric Point (pI)

32.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 217
AflII CTTAAG 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 179
AoxI GGCC 1 cut(s) 33
AspS9I GGNCC 1 cut(s) 33
BceAI ACGGC 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 1 cut(s) 30
BfrI CTTAAG 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 33
BmsI GCATC 1 cut(s) 119
BsaBI GATNNNNATC 1 cut(s) 155
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse8I GATNNNNATC 1 cut(s) 155
BseJI GATNNNNATC 1 cut(s) 155
BseLI CCNNNNNNNGG 1 cut(s) 217
BshFI GGCC 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 217
BsmAI GTCTC 1 cut(s) 179
BsmBI CGTCTC 1 cut(s) 179
BsmI GAATGC 1 cut(s) 63
BsnI GGCC 1 cut(s) 35
BspACI CCGC 1 cut(s) 96
BspANI GGCC 1 cut(s) 35
BspTI CTTAAG 1 cut(s) 62
BstAFI CTTAAG 1 cut(s) 62
BstMAI GTCTC 1 cut(s) 179
BsuRI GGCC 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 33
CviAII CATG 2 cut(s) 114, 145
CviJI RGCY 1 cut(s) 35
CviKI_1 RGCY 1 cut(s) 35
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 2 cut(s) 117, 148
FaiI YATR 6 cut(s) 84, 115, 146, 154, 156, 223
FatI CATG 2 cut(s) 113, 144
FspBI CTAG 1 cut(s) 30
HaeIII GGCC 1 cut(s) 35
Hin1II CATG 2 cut(s) 117, 148
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HinfI GANTC 1 cut(s) 167
HpaI GTTAAC 1 cut(s) 120
Hpy166II GTNNAC 1 cut(s) 120
Hpy8I GTNNAC 1 cut(s) 120
Hsp92II CATG 2 cut(s) 117, 148
KspAI GTTAAC 1 cut(s) 120
LweI GCATC 1 cut(s) 119
MaeI CTAG 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 136
MboII GAAGA 1 cut(s) 160
MnlI CCTC 2 cut(s) 18, 86
MseI TTAA 2 cut(s) 63, 119
MspCI CTTAAG 1 cut(s) 62
Mva1269I GAATGC 1 cut(s) 63
NlaIII CATG 2 cut(s) 117, 148
PctI GAATGC 1 cut(s) 63
PfeI GAWTC 1 cut(s) 167
PspPI GGNCC 1 cut(s) 33
SaqAI TTAA 2 cut(s) 63, 119
Sau96I GGNCC 1 cut(s) 33
SetI ASST 1 cut(s) 29
SfaNI GCATC 1 cut(s) 119
SgeI CNNG 9 cut(s) 42, 100, 118, 126, 135, 157, 185, 187, 224
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
SsiI CCGC 1 cut(s) 96
SspMI CTAG 1 cut(s) 30
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 2 cut(s) 63, 119
Tru9I TTAA 2 cut(s) 63, 119
TspDTI ATGAA 2 cut(s) 161, 213
TspGWI ACGGA 1 cut(s) 240
Vha464I CTTAAG 1 cut(s) 62
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.