pycom01g08250

Protein arv1 homolog

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Reverse (-)
9208469 .. 9209596
1128 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 213 bp
ATGGTGACAACTCAGTCAACTATGAGTAGATGTATAGCGGCCTGCTTCAGTGCTCACTTGGTAAAGTTTTTTGGTCACATAAAGGTGCTGGAATTGGGAACTTTTTGGATCTTAAATCTTTGGTTGCCTAACATTCTCTATATCGAAAGGCATCGTTTTTGTTACCACATTTTATATATTTTAGACGATGAATTTGAGTGCAGTGGACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

71

Amino Acids

8.27

Weight (kDa)

6.38

Isoelectric Point (pI)

80.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 13
AciI CCGC 1 cut(s) 38
AclWI GGATC 1 cut(s) 116
AcsI RAATTY 1 cut(s) 191
AcuI CTGAAG 1 cut(s) 31
Alw21I GWGCWC 1 cut(s) 55
AlwI GGATC 1 cut(s) 116
AoxI GGCC 1 cut(s) 39
ApoI RAATTY 1 cut(s) 191
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
AsuHPI GGTGA 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 55
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
BmsI GCATC 1 cut(s) 160
BseMII CTCAG 1 cut(s) 26
BshFI GGCC 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 55
BsnI GGCC 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 1 cut(s) 108
BspACI CCGC 1 cut(s) 38
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 25
BspPI GGATC 1 cut(s) 116
BssMI GATC 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 1 cut(s) 12
BstKTI GATC 1 cut(s) 111
BstMBI GATC 1 cut(s) 108
BstX2I RGATCY 1 cut(s) 108
BstYI RGATCY 1 cut(s) 108
BsuRI GGCC 1 cut(s) 41
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 2 cut(s) 55, 208
Cac8I GCNNGC 1 cut(s) 43
CviJI RGCY 1 cut(s) 41
CviKI_1 RGCY 1 cut(s) 41
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
Eco57I CTGAAG 1 cut(s) 31
FaiI YATR 7 cut(s) 23, 35, 80, 141, 175, 177, 211
Fnu4HI GCNGC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 39
GluI GCNGC 1 cut(s) 39
HaeIII GGCC 1 cut(s) 41
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 18, 206
Hpy8I GTNNAC 2 cut(s) 18, 206
HpyCH4V TGCA 1 cut(s) 201
HpyF3I CTNAG 1 cut(s) 12
Kzo9I GATC 1 cut(s) 108
LpnPI CCDG 2 cut(s) 55, 74
LweI GCATC 1 cut(s) 160
MaeIII GTNAC 3 cut(s) 4, 74, 161
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MflI RGATCY 1 cut(s) 108
MhlI GDGCHC 1 cut(s) 55
MluCI AATT 2 cut(s) 92, 191
MseI TTAA 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 83
NdeII GATC 1 cut(s) 108
NmuCI GTSAC 2 cut(s) 4, 74
PkrI GCNGC 1 cut(s) 40
PsuI RGATCY 1 cut(s) 108
RseI CAYNNNNRTG 1 cut(s) 83
SaqAI TTAA 1 cut(s) 113
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 1 cut(s) 108
SduI GDGCHC 1 cut(s) 55
SetI ASST 1 cut(s) 87
SfaNI GCATC 1 cut(s) 160
SgeI CNNG 3 cut(s) 54, 70, 101
SmiMI CAYNNNNRTG 1 cut(s) 83
Sse9I AATT 2 cut(s) 92, 191
SsiI CCGC 1 cut(s) 38
TaqI TCGA 1 cut(s) 144
TasI AATT 2 cut(s) 92, 191
TauI GCSGC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TscAI CASTG 2 cut(s) 55, 208
TseFI GTSAC 2 cut(s) 4, 74
Tsp45I GTSAC 2 cut(s) 4, 74
TspDTI ATGAA 1 cut(s) 204
TspRI CASTG 2 cut(s) 55, 208
XapI RAATTY 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.