pycom01g08330

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
9280637 .. 9281424
788 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
ATGAGGTCCTATTTTTGTTTAATAAATGGAGAAATATCTAATAAGTTGTGTTGTATATATTTAGCCTTCTCAATAGTTACGCTCCACTGCAACTCTCGTTCCAAATGTGCACTAACCAAATTACAAGGACTTCAAACCACAATTGAGTGTTATTCACAGTTCATTGATTTCGGAACAATGGTTTCTCCAACAATTTTTGCCCAGCGTAGTTTGTCTTATCTCATGAGTGACAAGCCTCAGGAAGCTATAAACAATGCAATGCAAGCACAAGTAGTTTCCCCACTGTTTGATATCCTTTCCTATTATATTCTGATTGTATTCATTTATTTTATTTATTACAAACGATGTATTTTGACTCCATCTGTTTGA

Protein Analysis

123

Amino Acids

13.99

Weight (kDa)

8.48

Isoelectric Point (pI)

57.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_BSK1_C PF25575 42 - 101 1.4e-21 Serine/threonine-protein kinase BSK1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 134
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
Alw21I GWGCWC 1 cut(s) 112
Alw44I GTGCAC 1 cut(s) 108
ApaLI GTGCAC 1 cut(s) 108
AspS9I GGNCC 1 cut(s) 6
AvaII GGWCC 1 cut(s) 6
AxyI CCTNAGG 1 cut(s) 237
BaeGI GKGCMC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 112
BccI CCATC 1 cut(s) 367
Bme18I GGWCC 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 6
Bse21I CCTNAGG 1 cut(s) 237
Bse3DI GCAATG 1 cut(s) 264
BseMI GCAATG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 251
BseSI GKGCMC 1 cut(s) 112
BseYI CCCAGC 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 112
BspCNI CTCAG 1 cut(s) 250
BspHI TCATGA 1 cut(s) 222
BsrDI GCAATG 1 cut(s) 264
Bst4CI ACNGT 2 cut(s) 159, 285
BstC8I GCNNGC 1 cut(s) 264
BstDEI CTNAG 1 cut(s) 237
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstSLI GKGCMC 1 cut(s) 112
Bsu36I CCTNAGG 1 cut(s) 237
BtsI GCAGTG 1 cut(s) 85
BtsIMutI CAGTG 2 cut(s) 85, 281
Cac8I GCNNGC 1 cut(s) 264
CciI TCATGA 1 cut(s) 222
Cfr13I GGNCC 1 cut(s) 6
CviAII CATG 1 cut(s) 223
CviJI RGCY 3 cut(s) 65, 235, 245
CviKI_1 RGCY 3 cut(s) 65, 235, 245
DdeI CTNAG 1 cut(s) 237
Eco32I GATATC 1 cut(s) 292
Eco47I GGWCC 1 cut(s) 6
Eco81I CCTNAGG 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 6
EcoRV GATATC 1 cut(s) 292
FaeI CATG 1 cut(s) 226
FaiI YATR 5 cut(s) 56, 58, 224, 248, 306
FatI CATG 1 cut(s) 222
GsaI CCCAGC 1 cut(s) 205
Hin1II CATG 1 cut(s) 226
HinfI GANTC 1 cut(s) 355
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 2 cut(s) 173, 312
Hpy188III TCNNGA 2 cut(s) 223, 239
Hpy8I GTNNAC 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 76
HpyCH4III ACNGT 2 cut(s) 159, 285
HpyCH4V TGCA 4 cut(s) 90, 110, 257, 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 1 cut(s) 237
Hsp92II CATG 1 cut(s) 226
LmnI GCTCC 1 cut(s) 87
LpnPI CCDG 2 cut(s) 215, 224
MaeIII GTNAC 2 cut(s) 76, 227
MfeI CAATTG 1 cut(s) 141
MhlI GDGCHC 1 cut(s) 112
MluCI AATT 3 cut(s) 119, 141, 192
MlyI GAGTC 1 cut(s) 349
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 1 cut(s) 246
MseI TTAA 1 cut(s) 20
MunI CAATTG 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 263
NlaIII CATG 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 227
PagI TCATGA 1 cut(s) 222
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
PpuMI RGGWCCY 1 cut(s) 6
Psp5II RGGWCCY 1 cut(s) 6
PspFI CCCAGC 1 cut(s) 201
PspPI GGNCC 1 cut(s) 6
PspPPI RGGWCCY 1 cut(s) 6
SaqAI TTAA 1 cut(s) 20
Sau96I GGNCC 1 cut(s) 6
SchI GAGTC 1 cut(s) 349
SduI GDGCHC 1 cut(s) 112
SetI ASST 2 cut(s) 8, 247
SgeI CNNG 8 cut(s) 108, 137, 214, 235, 244, 251, 275, 281
SinI GGWCC 1 cut(s) 6
Sse9I AATT 3 cut(s) 119, 141, 192
TaaI ACNGT 2 cut(s) 159, 285
TasI AATT 3 cut(s) 119, 141, 192
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TscAI CASTG 2 cut(s) 92, 288
TseFI GTSAC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 2 cut(s) 151, 310
TspRI CASTG 2 cut(s) 92, 288
VneI GTGCAC 1 cut(s) 108
VpaK11BI GGWCC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.