Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

9900288 .. 9906923

Gene Structure 6636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTTAAAAAAGCATGAGGCTGCTCTGAATTTCACATGTGTTGAAATGCGCACATTAGACCAACATGAGGGCTTTCCGGAAGCACTGGCAGACCCTGAGGGATTAGTTTGGCAGGTGCTGAATGCTGCATGGGATGCTAACATTCCAGTTGCTAGTGAGAATGCTCTTACTTGCTTTGGCAGAGAAGGCTACAACAAGATATTAGAAAATGCTAAGCCCTGGAACGATCCAGATGGCAGGCATTTATCAGCATTTACCTATCTCAGATTAAGCCCAGTTCTCATTGAGAGGCATAACTTAACGGAGTTCGAGCGATTTGTCAAGAGAATGCATGGAGAAGCCGCTCCTGATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

119

Amino Acids

13.43

Weight (kDa)

5.29

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	1 - 102	5.4e-13	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	103
Acc16I	TGCGCA	1 cut(s)	50
Acc36I	ACCTGC	1 cut(s)	103
AccBSI	CCGCTC	1 cut(s)	344
AccIII	TCCGGA	1 cut(s)	76
AciI	CCGC	1 cut(s)	342
AclWI	GGATC	1 cut(s)	221
AcsI	RAATTY	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	67
AflIII	ACRYGT	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	44
AjnI	CCWGG	1 cut(s)	218
AlwI	GGATC	1 cut(s)	221
AlwNI	CAGNNNCTG	2 cut(s)	95, 118
Aor13HI	TCCGGA	1 cut(s)	76
ApeKI	GCWGC	2 cut(s)	20, 125
ApoI	RAATTY	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	51
AxyI	CCTNAGG	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	7, 112
BccI	CCATC	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	220
BfaI	CTAG	1 cut(s)	153
BfuAI	ACCTGC	1 cut(s)	103
BisI	GCNGC	3 cut(s)	21, 126, 342
BlpI	GCTNAGC	1 cut(s)	213
BlsI	GCNGC	3 cut(s)	22, 127, 343
Bme1390I	CCNGG	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	220
BmrI	ACTGGG	1 cut(s)	269
BmsI	GCATC	1 cut(s)	124
BmuI	ACTGGG	1 cut(s)	269
Bpu1102I	GCTNAGC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	218
BsaWI	WCCGGW	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	3 cut(s)	90, 146, 275
Bse21I	CCTNAGG	1 cut(s)	96
BseAI	TCCGGA	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	218
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	2 cut(s)	87, 277
BseNI	ACTGG	3 cut(s)	90, 146, 275
BseXI	GCAGC	2 cut(s)	7, 112
BsiSI	CCGG	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmI	GAATGC	3 cut(s)	127, 166, 333
Bsp13I	TCCGGA	1 cut(s)	76
Bsp143I	GATC	1 cut(s)	226
Bsp1720I	GCTNAGC	1 cut(s)	213
BspACI	CCGC	1 cut(s)	342
BspCNI	CTCAG	2 cut(s)	88, 276
BspEI	TCCGGA	1 cut(s)	76
BspMI	ACCTGC	1 cut(s)	103
BspPI	GGATC	1 cut(s)	221
BsrBI	CCGCTC	1 cut(s)	344
BsrI	ACTGG	3 cut(s)	90, 146, 275
BssECI	CCNNGG	1 cut(s)	218
BssMI	GATC	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	220
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	3 cut(s)	96, 213, 263
BstF5I	GGATG	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 186
BstNI	CCWGG	1 cut(s)	220
BstNSI	RCATGY	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	218
BstV1I	GCAGC	2 cut(s)	7, 112
Bsu36I	CCTNAGG	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	83
BveI	ACCTGC	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	239
CaiI	CAGNNNCTG	2 cut(s)	95, 118
CfoI	GCGC	1 cut(s)	51
CviAII	CATG	5 cut(s)	14, 36, 65, 129, 332
CviJI	RGCY	6 cut(s)	20, 72, 189, 217, 273, 341
CviKI_1	RGCY	6 cut(s)	20, 72, 189, 217, 273, 341
DdeI	CTNAG	3 cut(s)	96, 213, 263
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
Eco81I	CCTNAGG	1 cut(s)	96
EcoRII	CCWGG	1 cut(s)	218
EcoT22I	ATGCAT	1 cut(s)	333
FaeI	CATG	5 cut(s)	17, 39, 68, 132, 335
FaiI	YATR	6 cut(s)	15, 37, 66, 130, 294, 333
FatI	CATG	5 cut(s)	13, 35, 64, 128, 331
Fnu4HI	GCNGC	3 cut(s)	21, 126, 342
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	3 cut(s)	21, 126, 342
FspAI	RTGCGCAY	1 cut(s)	50
FspBI	CTAG	1 cut(s)	153
FspI	TGCGCA	1 cut(s)	50
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	3 cut(s)	21, 126, 342
HapII	CCGG	1 cut(s)	77
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	5 cut(s)	17, 39, 68, 132, 335
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HpaII	CCGG	1 cut(s)	77
Hpy188I	TCNGA	2 cut(s)	27, 266
Hpy188III	TCNNGA	4 cut(s)	77, 230, 322, 347
HpyAV	CCTTC	1 cut(s)	179
HpyCH4V	TGCA	2 cut(s)	128, 331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 186
HpyF3I	CTNAG	3 cut(s)	96, 213, 263
Hsp92II	CATG	5 cut(s)	17, 39, 68, 132, 335
HspAI	GCGC	1 cut(s)	49
Kpn2I	TCCGGA	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	349
Lsp1109I	GCAGC	2 cut(s)	7, 112
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	153
MalI	GATC	1 cut(s)	228
MbiI	CCGCTC	1 cut(s)	344
MboI	GATC	1 cut(s)	226
MluCI	AATT	1 cut(s)	28
MnlI	CCTC	4 cut(s)	10, 61, 91, 282
Mph1103I	ATGCAT	1 cut(s)	333
MroI	TCCGGA	1 cut(s)	76
MseI	TTAA	3 cut(s)	5, 269, 299
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	220
Mva1269I	GAATGC	3 cut(s)	127, 166, 333
MvaI	CCWGG	1 cut(s)	220
MwoI	GCNNNNNNNGC	2 cut(s)	134, 186
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	5 cut(s)	17, 39, 68, 132, 335
NsbI	TGCGCA	1 cut(s)	50
NsiI	ATGCAT	1 cut(s)	333
NspI	RCATGY	1 cut(s)	39
PaqCI	CACCTGC	1 cut(s)	103
PciI	ACATGT	1 cut(s)	35
PctI	GAATGC	3 cut(s)	127, 166, 333
PkrI	GCNGC	3 cut(s)	22, 127, 343
PscI	ACATGT	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PstNI	CAGNNNCTG	2 cut(s)	95, 118
SaqAI	TTAA	3 cut(s)	5, 269, 299
SatI	GCNGC	3 cut(s)	21, 126, 342
Sau3AI	GATC	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	220
SetI	ASST	2 cut(s)	117, 260
SfaNI	GCATC	1 cut(s)	124
Sse9I	AATT	1 cut(s)	28
SsiI	CCGC	1 cut(s)	342
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	218
TaqI	TCGA	1 cut(s)	309
TasI	AATT	1 cut(s)	28
TauI	GCSGC	1 cut(s)	344
Tru1I	TTAA	3 cut(s)	5, 269, 299
Tru9I	TTAA	3 cut(s)	5, 269, 299
TscAI	CASTG	1 cut(s)	90
TseI	GCWGC	2 cut(s)	20, 125
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	1 cut(s)	90
XapI	RAATTY	1 cut(s)	28
XceI	RCATGY	1 cut(s)	39
XspI	CTAG	1 cut(s)	153
Zsp2I	ATGCAT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.