Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

10069365 .. 10069787

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGATTCGCTGGCGTATCCAAACTGCAATGCCAGTGGTTGTCCCTTCTGTTCGGTGCCTTTTCTCTTGCCAACCACCACCTGTTCCAGATACTGGTTTGGCTGTTCTTCAACCCAGCATATCGGTTTCTGGGTTGCATGCTGGAAACTCAAACCCACCTCAGAGAAATCAGGCTCCTCTTGCGCGAACAGTAACTAACATACCAGGGAAATTTAAACCATTGCCATCACAAGATTATGATATGGATATTGACCCATGGACGCTGCTGGAAGATGGTGCAGGATCAGGCCCATCTTCAAGTAGCAGTGCTTTGATAGGCAGTGCGGACCATGGCAATCTTCGAGCATCTAGCTGGCTCAAGGGGGCTGTGAGGGTGAGACGAAAGGATCTCACATACATTGGTGCTGTGGATGATGACAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016592 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040034 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:0071704 GO:0090213 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med12

Protein Analysis

141

Amino Acids

14.92

Weight (kDa)

7.82

Isoelectric Point (pI)

54.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	54
AccB7I	CCANNNNNTGG	1 cut(s)	92
AccII	CGCG	1 cut(s)	184
AciI	CCGC	1 cut(s)	323
AclWI	GGATC	2 cut(s)	289, 393
AcsI	RAATTY	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgsI	TTSAA	2 cut(s)	110, 297
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	2 cut(s)	351, 420
AluI	AGCT	2 cut(s)	351, 420
Alw26I	GTCTC	1 cut(s)	370
AlwI	GGATC	2 cut(s)	289, 393
AlwNI	CAGNNNCTG	1 cut(s)	92
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	1 cut(s)	262
ApoI	RAATTY	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	2 cut(s)	287, 325
AsuHPI	GGTGA	1 cut(s)	385
AvaII	GGWCC	1 cut(s)	325
BanI	GGYRCC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	249
BccI	CCATC	3 cut(s)	232, 266, 298
BciT130I	CCWGG	1 cut(s)	204
BciVI	GTATCC	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	1 cut(s)	348
BfuI	GTATCC	1 cut(s)	26
BisI	GCNGC	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	264
Bme1390I	CCNGG	1 cut(s)	204
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	2 cut(s)	287, 325
BmiI	GGNNCC	2 cut(s)	56, 174
BmrFI	CCNGG	1 cut(s)	204
BmsI	GCATC	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	341
BsaJI	CCNNGG	3 cut(s)	203, 254, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse1I	ACTGG	2 cut(s)	32, 97
Bse3DI	GCAATG	2 cut(s)	33, 218
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	3 cut(s)	203, 254, 328
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMI	GCAATG	2 cut(s)	33, 218
BseMII	CTCAG	1 cut(s)	173
BseNI	ACTGG	2 cut(s)	32, 97
BseRI	GAGGAG	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	249
BseYI	CCCAGC	1 cut(s)	113
BsgI	GTGCAG	1 cut(s)	297
Bsh1236I	CGCG	1 cut(s)	184
BshFI	GGCC	1 cut(s)	288
BshNI	GGYRCC	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	370
BsmBI	CGTCTC	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	288
Bsp143I	GATC	2 cut(s)	281, 385
Bsp19I	CCATGG	2 cut(s)	254, 328
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	1 cut(s)	172
BspFNI	CGCG	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	56, 174
BspPI	GGATC	2 cut(s)	289, 393
BspT107I	GGYRCC	1 cut(s)	54
BsrDI	GCAATG	2 cut(s)	33, 218
BsrI	ACTGG	2 cut(s)	32, 97
BssECI	CCNNGG	3 cut(s)	203, 254, 328
BssMI	GATC	2 cut(s)	281, 385
BssT1I	CCWWGG	2 cut(s)	254, 328
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	190
BstC8I	GCNNGC	3 cut(s)	11, 138, 353
BstDEI	CTNAG	1 cut(s)	159
BstDSI	CCRYGG	2 cut(s)	254, 328
BstF5I	GGATG	1 cut(s)	415
BstFNI	CGCG	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	2 cut(s)	284, 388
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	2 cut(s)	281, 385
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	1 cut(s)	204
BstNSI	RCATGY	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	202
BstUI	CGCG	1 cut(s)	184
BstV1I	GCAGC	1 cut(s)	249
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuI	GTATCC	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	288
BtgI	CCRYGG	2 cut(s)	254, 328
BtsCI	GGATG	1 cut(s)	415
BtsI	GCAGTG	2 cut(s)	310, 325
BtsIMutI	CAGTG	3 cut(s)	39, 310, 325
Cac8I	GCNNGC	3 cut(s)	11, 138, 353
CaiI	CAGNNNCTG	1 cut(s)	92
CfoI	GCGC	1 cut(s)	184
Cfr13I	GGNCC	2 cut(s)	287, 325
CseI	GACGC	1 cut(s)	268
CspCI	CAANNNNNGTGG	2 cut(s)	15, 50
CviAII	CATG	3 cut(s)	137, 255, 329
CviJI	RGCY	7 cut(s)	101, 173, 288, 351, 355, 365, 420
CviKI_1	RGCY	7 cut(s)	101, 173, 288, 351, 355, 365, 420
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	2 cut(s)	283, 387
DpnII	GATC	2 cut(s)	281, 385
DraI	TTTAAA	1 cut(s)	214
Eco130I	CCWWGG	2 cut(s)	254, 328
Eco47I	GGWCC	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	202
EcoT14I	CCWWGG	2 cut(s)	254, 328
ErhI	CCWWGG	2 cut(s)	254, 328
Esp3I	CGTCTC	1 cut(s)	370
FaeI	CATG	3 cut(s)	140, 258, 332
FaiI	YATR	8 cut(s)	119, 138, 200, 237, 242, 256, 330, 394
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	3 cut(s)	136, 254, 328
Fnu4HI	GCNGC	1 cut(s)	263
Fsp4HI	GCNGC	1 cut(s)	263
FspBI	CTAG	1 cut(s)	348
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	1 cut(s)	263
GsaI	CCCAGC	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	288
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	3 cut(s)	140, 258, 332
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	1 cut(s)	385
Hpy188I	TCNGA	1 cut(s)	162
Hpy188III	TCNNGA	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	54
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	3 cut(s)	26, 136, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	3 cut(s)	140, 258, 332
HspAI	GCGC	1 cut(s)	182
Kzo9I	GATC	2 cut(s)	281, 385
LmnI	GCTCC	1 cut(s)	178
Lsp1109I	GCAGC	1 cut(s)	249
LweI	GCATC	1 cut(s)	353
MaeI	CTAG	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	2 cut(s)	283, 387
MboI	GATC	2 cut(s)	281, 385
MboII	GAAGA	4 cut(s)	98, 281, 285, 329
MflI	RGATCY	1 cut(s)	385
MluCI	AATT	1 cut(s)	209
MnlI	CCTC	3 cut(s)	168, 186, 363
MseI	TTAA	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	420
MspR9I	CCNGG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	204
MvnI	CGCG	1 cut(s)	184
MwoI	GCNNNNNNNGC	1 cut(s)	179
NcoI	CCATGG	2 cut(s)	254, 328
NdeII	GATC	2 cut(s)	281, 385
NlaIII	CATG	3 cut(s)	140, 258, 332
NlaIV	GGNNCC	2 cut(s)	56, 174
NspI	RCATGY	1 cut(s)	140
PaeI	GCATGC	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	4
PflMI	CCANNNNNTGG	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	202
PspFI	CCCAGC	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	2 cut(s)	56, 174
PspPI	GGNCC	2 cut(s)	287, 325
PstNI	CAGNNNCTG	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	385
PvuII	CAGCTG	1 cut(s)	420
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	1 cut(s)	263
Sau3AI	GATC	2 cut(s)	281, 385
Sau96I	GGNCC	2 cut(s)	287, 325
ScrFI	CCNGG	1 cut(s)	204
SetI	ASST	4 cut(s)	82, 160, 353, 422
SfaNI	GCATC	1 cut(s)	353
SinI	GGWCC	1 cut(s)	325
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
SphI	GCATGC	1 cut(s)	140
Sse9I	AATT	1 cut(s)	209
SsiI	CCGC	1 cut(s)	323
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	1 cut(s)	202
StyI	CCWWGG	2 cut(s)	254, 328
TaaI	ACNGT	1 cut(s)	190
TaqI	TCGA	1 cut(s)	340
TasI	AATT	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	3 cut(s)	39, 310, 325
TseI	GCWGC	1 cut(s)	262
TspRI	CASTG	3 cut(s)	39, 310, 325
Van91I	CCANNNNNTGG	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	325
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	1 cut(s)	140
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.