Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10117026 .. 10121236

Gene Structure 4211 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGATTGAGAAACTTGCTCAGTTCACGGATATCAGATGTTGCCAGGCTATTGGAGGGCTTCCAATGAAGGAACAAGAGATAGCCTTGAGATCAAAGCCAGATATTGTTGTAGCTACTCCAGGACGCATTATAGATCATTTACACAATTCTATGTCTGTGGATTTGGAAGATCTTGCTGTTCTAATTCTTGACGAGGCTGATCGACTTTTAGAGATTGGGTTTAGTGCTGAAATTCGCGAGCTGGCAGAGAATATGATAGTACACAAAGATGAAATCTTTTCACGTCCGAAGAAGTCCTGGTTTCAGTCAGAAAATGATAAGAAGAAGGTAGTGCACGCAGCGAAGGCATCCCTTGGAAGAGAAAAGCGTTGTGGAAATGATGTAATCAGTGCTCAGCAAGCCGAAGACATAAAAATGAAGGAAAAGAGGAAGCGGGAGCGTGAGTTTTTTTGTTTAGCATCTAACTTGATCCATCGTGAACAGAAAAATTTGCCTCGCAAGATACGCCGGAAATTGGAAGCAGCTAGAGAAATGTTAGAGGATGAAAATCAGCTCAAAGGCAGTGACAAGTTTAAAGAGAAGACAGGAATGCCACTTGTTGACCTTGCTTACAGACGGGCAAAAGCCATGAAGGCTGCACAAAAAACAACAGATGCTGGCATGACTTTGAAGAAGTCTAGCAAGAGATGTAATCTTCCTCCACGAAGAACTCAGTCTAGAACAGATGAGATGCGGGACCTGTTCCACAGTGACATAACTGAAAGGAAGCATAACAGAAAGCTTGGTGGGGCGGGAATGAAAAAGTCCAAGAATTCCTTCAAGAGCAACTCAAGGTATGCAGCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

283

Amino Acids

32.33

Weight (kDa)

9.73

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	3 - 86	1.2e-14	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	237
AciI	CCGC	3 cut(s)	433, 733, 791
AclWI	GGATC	1 cut(s)	463
AcsI	RAATTY	3 cut(s)	231, 487, 811
AfaI	GTAC	1 cut(s)	261
AfiI	CCNNNNNNNGG	1 cut(s)	514
AgsI	TTSAA	2 cut(s)	670, 820
AjiI	CACGTC	1 cut(s)	284
AjnI	CCWGG	3 cut(s)	42, 118, 296
AjuI	GAANNNNNNNTTGG	2 cut(s)	800, 832
AluBI	AGCT	6 cut(s)	113, 241, 524, 553, 781, 842
AluI	AGCT	6 cut(s)	113, 241, 524, 553, 781, 842
Alw21I	GWGCWC	2 cut(s)	336, 394
Alw44I	GTGCAC	1 cut(s)	332
AlwI	GGATC	1 cut(s)	463
AlwNI	CAGNNNCTG	1 cut(s)	656
ApaLI	GTGCAC	1 cut(s)	332
ApeKI	GCWGC	4 cut(s)	338, 521, 635, 839
ApoI	RAATTY	3 cut(s)	231, 487, 811
Asp700I	GAANNNNTTC	1 cut(s)	815
AspS9I	GGNCC	1 cut(s)	736
AvaII	GGWCC	1 cut(s)	736
BaeGI	GKGCMC	1 cut(s)	336
BbsI	GAAGAC	2 cut(s)	411, 587
Bbv12I	GWGCWC	2 cut(s)	336, 394
BbvI	GCAGC	3 cut(s)	350, 533, 622
BccI	CCATC	1 cut(s)	480
BciT130I	CCWGG	3 cut(s)	44, 120, 298
BfaI	CTAG	3 cut(s)	525, 678, 717
BglI	GCCNNNNNGGC	1 cut(s)	632
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	4 cut(s)	339, 522, 636, 840
BlpI	GCTNAGC	1 cut(s)	393
BlsI	GCNGC	4 cut(s)	340, 523, 637, 841
Bme1390I	CCNGG	3 cut(s)	44, 120, 298
Bme18I	GGWCC	1 cut(s)	736
BmgBI	CACGTC	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	736
BmiI	GGNNCC	1 cut(s)	737
BmrFI	CCNGG	3 cut(s)	44, 120, 298
BmsI	GCATC	4 cut(s)	356, 467, 643, 720
BpiI	GAAGAC	2 cut(s)	411, 587
BpmI	CTGGAG	1 cut(s)	102
Bpu1102I	GCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	2 cut(s)	106, 814
BsaBI	GATNNNNATC	1 cut(s)	546
BsaJI	CCNNGG	1 cut(s)	352
BsaXI	ACNNNNNCTCC	2 cut(s)	428, 458
Bsc4I	CCNNNNNNNGG	1 cut(s)	514
Bse8I	GATNNNNATC	1 cut(s)	546
BseBI	CCWGG	3 cut(s)	44, 120, 298
BseDI	CCNNGG	1 cut(s)	352
BseGI	GGATG	2 cut(s)	347, 547
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	1 cut(s)	514
BseMII	CTCAG	3 cut(s)	32, 407, 725
BseSI	GKGCMC	1 cut(s)	336
BseXI	GCAGC	3 cut(s)	350, 533, 622
BsgI	GTGCAG	1 cut(s)	621
Bsh1236I	CGCG	1 cut(s)	237
BsiHKAI	GWGCWC	2 cut(s)	336, 394
BsiSI	CCGG	1 cut(s)	508
BslFI	GGGAC	1 cut(s)	749
BslI	CCNNNNNNNGG	1 cut(s)	514
BsmFI	GGGAC	1 cut(s)	749
BsmI	GAATGC	1 cut(s)	594
Bsp1286I	GDGCHC	2 cut(s)	336, 394
Bsp143I	GATC	5 cut(s)	89, 133, 169, 199, 468
Bsp1720I	GCTNAGC	1 cut(s)	393
Bsp68I	TCGCGA	1 cut(s)	237
BspACI	CCGC	3 cut(s)	433, 733, 791
BspCNI	CTCAG	3 cut(s)	31, 406, 724
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	737
BspPI	GGATC	1 cut(s)	463
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	5 cut(s)	89, 133, 169, 199, 468
BssT1I	CCWWGG	1 cut(s)	352
Bst2UI	CCWGG	3 cut(s)	44, 120, 298
Bst4CI	ACNGT	1 cut(s)	749
Bst6I	CTCTTC	1 cut(s)	352
BstC8I	GCNNGC	5 cut(s)	239, 243, 336, 399, 658
BstDEI	CTNAG	3 cut(s)	18, 393, 711
BstF5I	GGATG	2 cut(s)	347, 547
BstFNI	CGCG	1 cut(s)	237
BstKTI	GATC	5 cut(s)	92, 136, 172, 202, 471
BstMBI	GATC	5 cut(s)	89, 133, 169, 199, 468
BstMWI	GCNNNNNNNGC	4 cut(s)	344, 398, 504, 632
BstNI	CCWGG	3 cut(s)	44, 120, 298
BstSCI	CCNGG	3 cut(s)	42, 118, 296
BstSLI	GKGCMC	1 cut(s)	336
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	3 cut(s)	350, 533, 622
BstV2I	GAAGAC	2 cut(s)	411, 587
BstX2I	RGATCY	1 cut(s)	169
BstXI	CCANNNNNNTGG	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	169
BtrI	CACGTC	1 cut(s)	284
BtsCI	GGATG	2 cut(s)	347, 547
BtsI	GCAGTG	1 cut(s)	568
BtsIMutI	CAGTG	3 cut(s)	394, 568, 754
BtuMI	TCGCGA	1 cut(s)	237
Cac8I	GCNNGC	5 cut(s)	239, 243, 336, 399, 658
CaiI	CAGNNNCTG	1 cut(s)	656
Cfr13I	GGNCC	1 cut(s)	736
CseI	GACGC	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	260
CviAII	CATG	2 cut(s)	628, 661
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	3 cut(s)	18, 393, 711
DpnI	GATC	5 cut(s)	91, 135, 171, 201, 470
DpnII	GATC	5 cut(s)	89, 133, 169, 199, 468
DraI	TTTAAA	1 cut(s)	574
Eam1104I	CTCTTC	1 cut(s)	352
EarI	CTCTTC	1 cut(s)	352
Eco130I	CCWWGG	1 cut(s)	352
Eco32I	GATATC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	736
EcoO109I	RGGNCCY	1 cut(s)	736
EcoRI	GAATTC	1 cut(s)	811
EcoRII	CCWGG	3 cut(s)	42, 118, 296
EcoRV	GATATC	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	2 cut(s)	631, 664
FaiI	YATR	9 cut(s)	131, 152, 254, 410, 629, 662, 755, 771, 837
FalI	AAGNNNNNCTT	2 cut(s)	800, 832
FaqI	GGGAC	1 cut(s)	749
FatI	CATG	2 cut(s)	627, 660
FauI	CCCGC	3 cut(s)	426, 726, 784
Fnu4HI	GCNGC	4 cut(s)	339, 522, 636, 840
FokI	GGATG	2 cut(s)	334, 554
Fsp4HI	GCNGC	4 cut(s)	339, 522, 636, 840
FspBI	CTAG	3 cut(s)	525, 678, 717
GluI	GCNGC	4 cut(s)	339, 522, 636, 840
GsuI	CTGGAG	1 cut(s)	102
HapII	CCGG	1 cut(s)	508
HgaI	GACGC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	631, 664
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HindIII	AAGCTT	1 cut(s)	779
HpaII	CCGG	1 cut(s)	508
Hpy166II	GTNNAC	5 cut(s)	24, 262, 334, 479, 601
Hpy188I	TCNGA	3 cut(s)	35, 288, 310
Hpy188III	TCNNGA	5 cut(s)	188, 236, 476, 717, 820
Hpy8I	GTNNAC	5 cut(s)	24, 262, 334, 479, 601
HpyAV	CCTTC	6 cut(s)	61, 319, 337, 412, 625, 826
HpyCH4III	ACNGT	1 cut(s)	749
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	3 cut(s)	334, 638, 839
HpyF10VI	GCNNNNNNNGC	4 cut(s)	344, 398, 504, 632
HpyF3I	CTNAG	3 cut(s)	18, 393, 711
HpySE526I	ACGT	1 cut(s)	283
Hsp92II	CATG	2 cut(s)	631, 664
Kzo9I	GATC	5 cut(s)	89, 133, 169, 199, 468
LmnI	GCTCC	2 cut(s)	436, 847
Lsp1109I	GCAGC	3 cut(s)	350, 533, 622
LweI	GCATC	4 cut(s)	356, 467, 643, 720
MaeI	CTAG	3 cut(s)	525, 678, 717
MaeII	ACGT	1 cut(s)	283
MaeIII	GTNAC	2 cut(s)	563, 749
MalI	GATC	5 cut(s)	91, 135, 171, 201, 470
MboI	GATC	5 cut(s)	89, 133, 169, 199, 468
MboII	GAAGA	9 cut(s)	179, 301, 334, 369, 416, 592, 682, 686, 717
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	2 cut(s)	336, 394
MluCI	AATT	6 cut(s)	145, 183, 231, 487, 512, 811
MnlI	CCTC	6 cut(s)	47, 187, 420, 504, 532, 708
MroXI	GAANNNNTTC	1 cut(s)	815
MseI	TTAA	2 cut(s)	573, 847
MslI	CAYNNNNRTG	2 cut(s)	267, 413
MspI	CCGG	1 cut(s)	508
MspR9I	CCNGG	3 cut(s)	44, 120, 298
Mva1269I	GAATGC	1 cut(s)	594
MvaI	CCWGG	3 cut(s)	44, 120, 298
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	4 cut(s)	344, 398, 504, 632
NdeII	GATC	5 cut(s)	89, 133, 169, 199, 468
NlaIII	CATG	2 cut(s)	631, 664
NlaIV	GGNNCC	1 cut(s)	737
NmuCI	GTSAC	2 cut(s)	563, 749
NruI	TCGCGA	1 cut(s)	237
PctI	GAATGC	1 cut(s)	594
PdmI	GAANNNNTTC	1 cut(s)	815
PfoI	TCCNGGA	1 cut(s)	118
PkrI	GCNGC	4 cut(s)	340, 523, 637, 841
PpuMI	RGGWCCY	1 cut(s)	736
Psp5II	RGGWCCY	1 cut(s)	736
Psp6I	CCWGG	3 cut(s)	42, 118, 296
PspGI	CCWGG	3 cut(s)	42, 118, 296
PspN4I	GGNNCC	1 cut(s)	737
PspPI	GGNCC	1 cut(s)	736
PspPPI	RGGWCCY	1 cut(s)	736
PstNI	CAGNNNCTG	1 cut(s)	656
PsuI	RGATCY	1 cut(s)	169
RruI	TCGCGA	1 cut(s)	237
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
RseI	CAYNNNNRTG	2 cut(s)	267, 413
SaqAI	TTAA	2 cut(s)	573, 847
SatI	GCNGC	4 cut(s)	339, 522, 636, 840
Sau3AI	GATC	5 cut(s)	89, 133, 169, 199, 468
Sau96I	GGNCC	1 cut(s)	736
ScrFI	CCNGG	3 cut(s)	44, 120, 298
SduI	GDGCHC	2 cut(s)	336, 394
SfaNI	GCATC	4 cut(s)	356, 467, 643, 720
SinI	GGWCC	1 cut(s)	736
SmiMI	CAYNNNNRTG	2 cut(s)	267, 413
SmlI	CTYRAG	2 cut(s)	85, 829
SmoI	CTYRAG	2 cut(s)	85, 829
Sse9I	AATT	6 cut(s)	145, 183, 231, 487, 512, 811
SsiI	CCGC	3 cut(s)	433, 733, 791
SspMI	CTAG	3 cut(s)	525, 678, 717
StyD4I	CCNGG	3 cut(s)	42, 118, 296
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	1 cut(s)	749
TaiI	ACGT	1 cut(s)	286
TaqI	TCGA	1 cut(s)	202
TasI	AATT	6 cut(s)	145, 183, 231, 487, 512, 811
TatI	WGTACW	1 cut(s)	259
Tru1I	TTAA	2 cut(s)	573, 847
Tru9I	TTAA	2 cut(s)	573, 847
TscAI	CASTG	3 cut(s)	394, 568, 754
TseFI	GTSAC	2 cut(s)	563, 749
TseI	GCWGC	4 cut(s)	338, 521, 635, 839
Tsp45I	GTSAC	2 cut(s)	563, 749
TspDTI	ATGAA	6 cut(s)	80, 285, 431, 558, 644, 812
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	3 cut(s)	394, 568, 754
VneI	GTGCAC	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	736
XapI	RAATTY	3 cut(s)	231, 487, 811
XbaI	TCTAGA	1 cut(s)	716
XmnI	GAANNNNTTC	1 cut(s)	815
XspI	CTAG	3 cut(s)	525, 678, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.