Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10135584 .. 10137268

Gene Structure 1685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGAACGATCTTCTGTCCCTAGTTGCTGCGCAATTGAGGATGAATTCTGCTGAGCCGCATCAAGGGCAGAGAATTGATGATGCTATAAAGATACTCCCGCAACTTGCAGCACAGATTGATGCCAAACTAAACTACAGAAGAATACAAGACTTGGGAGATTTCAAGGGACAAGATGTATTCAAGCTCTTAGGGGTCCCTCTATACCATACAGATGGGTCAAATTCAAGCTTCTCTAAGACAGGAAAGGAAAAAAAAGGGGACCTCGAGGAACTTTCTGAGTTAGAGAAGGCTATACAACTGTCTTTGGCAGAGGTCACTAGTGTTTCTGCAGAAAAAGCTCTTTCTAAAGAGGAGAATGGATTGTGCGTCTTTTATTGGAACGGTTCTTTTGACACCATTTACAAGATAAAAAATGAGCTGTTTTTTCTGGCAGCAAGTGAGGATGTCGTTGAGTGGAGACATTTGGATCAGAGACGGGAATCAAAGTTTAACCCTATTATTGGAGAGTTTAGTGTTAAAATTCCAGAGGTTAGTGTCAAAATTGCAGTTGTTGCTATGGAAGCGGAGTCAGAGGTTTGCTTTTGTGAAGCTATGAACTGCTACAAGGGGATATGGGAGAAGGTGGTTGAAGCGAATCTAAGTAATGTCATTGACTCACTCAGGAAGGGGTTACGTTATGATCTATTGGTCATGAATTATAGCTTCATCAAGGACGAAATGGCTAGAGACAAGGCATGCATAGAGAAGTTGAGGAAAGAAGGATTCACTGGAGAGATTGCAGCATTGGGCTATGGGCACGCTCTGCCGGAAGATGACTTACAGTTCTTGATTGACATGGAAATATATGTTGCAGTTGAAGAAGATCTTGAAGGAGTGACATTGATCAGAGAGTGTTTGAATGGTCCACACATGTTTCAAGTCGTGCTTGATGATTTGATCGAAAAAGCAATGCAGAATCAGGAATTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008238 GO:0009987 GO:0016579 GO:0016604 GO:0016787 GO:0016807 GO:0019538 GO:0031593 GO:0031974 GO:0031981 GO:0036211 GO:0036435 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070004 GO:0070011 GO:0070013 GO:0070646 GO:0070647 GO:0071108 GO:0071704 GO:0101005 GO:0140030 GO:0140096 GO:1901564 GO:1990380

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MINDY_DUB

Protein Analysis

324

Amino Acids

36.57

Weight (kDa)

4.74

Isoelectric Point (pI)

30.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	263
Acc16I	TGCGCA	1 cut(s)	30
AciI	CCGC	3 cut(s)	56, 98, 563
AclWI	GGATC	1 cut(s)	474
AcsI	RAATTY	4 cut(s)	43, 220, 519, 962
AfiI	CCNNNNNNNGG	2 cut(s)	62, 500
AflIII	ACRYGT	1 cut(s)	909
AgsI	TTSAA	8 cut(s)	163, 181, 225, 629, 857, 869, 898, 917
AhlI	ACTAGT	1 cut(s)	317
AluBI	AGCT	6 cut(s)	184, 228, 338, 418, 590, 702
AluI	AGCT	6 cut(s)	184, 228, 338, 418, 590, 702
Alw26I	GTCTC	3 cut(s)	451, 466, 720
AlwI	GGATC	1 cut(s)	474
Ama87I	CYCGRG	1 cut(s)	263
ApeKI	GCWGC	4 cut(s)	26, 107, 431, 779
ApoI	RAATTY	4 cut(s)	43, 220, 519, 962
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	3 cut(s)	193, 259, 902
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	3 cut(s)	193, 259, 902
BaeGI	GKGCMC	1 cut(s)	798
BarI	GAAGNNNNNNTAC	2 cut(s)	801, 833
BbvI	GCAGC	4 cut(s)	13, 119, 443, 791
BccI	CCATC	1 cut(s)	206
BclI	TGATCA	1 cut(s)	882
BcoDI	GTCTC	3 cut(s)	451, 466, 720
BcuI	ACTAGT	1 cut(s)	317
BfaI	CTAG	3 cut(s)	20, 318, 723
BfmI	CTRYAG	2 cut(s)	133, 327
BglII	AGATCT	1 cut(s)	862
BisI	GCNGC	5 cut(s)	27, 56, 108, 432, 780
BlpI	GCTNAGC	1 cut(s)	51
BlsI	GCNGC	5 cut(s)	28, 57, 109, 433, 781
Bme18I	GGWCC	3 cut(s)	193, 259, 902
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	3 cut(s)	193, 259, 902
BmiI	GGNNCC	3 cut(s)	194, 195, 260
BmsI	GCATC	3 cut(s)	67, 70, 109
BpmI	CTGGAG	1 cut(s)	789
Bpu1102I	GCTNAGC	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 500
Bse1I	ACTGG	1 cut(s)	772
Bse3DI	GCAATG	1 cut(s)	954
BseGI	GGATG	2 cut(s)	45, 448
BseLI	CCNNNNNNNGG	2 cut(s)	62, 500
BseMI	GCAATG	1 cut(s)	954
BseMII	CTCAG	3 cut(s)	42, 267, 673
BseNI	ACTGG	1 cut(s)	772
BseRI	GAGGAG	1 cut(s)	365
BseSI	GKGCMC	1 cut(s)	798
BseXI	GCAGC	4 cut(s)	13, 119, 443, 791
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	806
BslFI	GGGAC	3 cut(s)	179, 180, 272
BslI	CCNNNNNNNGG	2 cut(s)	62, 500
BsmAI	GTCTC	3 cut(s)	451, 466, 720
BsmBI	CGTCTC	1 cut(s)	466
BsmFI	GGGAC	3 cut(s)	179, 180, 272
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	798
Bsp143I	GATC	6 cut(s)	7, 466, 679, 862, 882, 936
Bsp1720I	GCTNAGC	1 cut(s)	51
BspACI	CCGC	3 cut(s)	56, 98, 563
BspCNI	CTCAG	3 cut(s)	43, 268, 672
BspHI	TCATGA	1 cut(s)	690
BspLI	GGNNCC	3 cut(s)	194, 195, 260
BspMAI	CTGCAG	1 cut(s)	331
BspPI	GGATC	1 cut(s)	474
BsrDI	GCAATG	1 cut(s)	954
BsrI	ACTGG	1 cut(s)	772
BssMI	GATC	6 cut(s)	7, 466, 679, 862, 882, 936
Bst4CI	ACNGT	3 cut(s)	300, 383, 822
BstAPI	GCANNNNNTGC	2 cut(s)	551, 802
BstC8I	GCNNGC	2 cut(s)	736, 798
BstDEI	CTNAG	6 cut(s)	51, 187, 234, 276, 638, 659
BstF5I	GGATG	2 cut(s)	45, 448
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	6 cut(s)	10, 469, 682, 865, 885, 939
BstMAI	GTCTC	3 cut(s)	451, 466, 720
BstMBI	GATC	6 cut(s)	7, 466, 679, 862, 882, 936
BstMWI	GCNNNNNNNGC	5 cut(s)	64, 335, 551, 560, 802
BstNSI	RCATGY	2 cut(s)	738, 913
BstSFI	CTRYAG	2 cut(s)	133, 327
BstSLI	GKGCMC	1 cut(s)	798
BstV1I	GCAGC	4 cut(s)	13, 119, 443, 791
BstX2I	RGATCY	1 cut(s)	862
BstXI	CCANNNNNNTGG	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	862
BtsCI	GGATG	2 cut(s)	45, 448
BtsIMutI	CAGTG	1 cut(s)	765
Cac8I	GCNNGC	2 cut(s)	736, 798
CciI	TCATGA	1 cut(s)	690
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	3 cut(s)	193, 259, 902
CseI	GACGC	1 cut(s)	355
CviAII	CATG	4 cut(s)	691, 735, 835, 910
DdeI	CTNAG	6 cut(s)	51, 187, 234, 276, 638, 659
DpnI	GATC	6 cut(s)	9, 468, 681, 864, 884, 938
DpnII	GATC	6 cut(s)	7, 466, 679, 862, 882, 936
Eco47I	GGWCC	3 cut(s)	193, 259, 902
Eco88I	CYCGRG	1 cut(s)	263
EcoO109I	RGGNCCY	2 cut(s)	193, 259
EcoRI	GAATTC	1 cut(s)	43
EcoT22I	ATGCAT	1 cut(s)	740
Esp3I	CGTCTC	1 cut(s)	466
FaeI	CATG	4 cut(s)	694, 738, 838, 913
FalI	AAGNNNNNCTT	4 cut(s)	849, 881, 909, 941
FaqI	GGGAC	3 cut(s)	179, 180, 272
FatI	CATG	4 cut(s)	690, 734, 834, 909
FauI	CCCGC	1 cut(s)	105
FbaI	TGATCA	1 cut(s)	882
Fnu4HI	GCNGC	5 cut(s)	27, 56, 108, 432, 780
FokI	GGATG	2 cut(s)	52, 455
Fsp4HI	GCNGC	5 cut(s)	27, 56, 108, 432, 780
FspBI	CTAG	3 cut(s)	20, 318, 723
FspI	TGCGCA	1 cut(s)	30
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	5 cut(s)	27, 56, 108, 432, 780
GsuI	CTGGAG	1 cut(s)	789
HapII	CCGG	1 cut(s)	806
HgaI	GACGC	1 cut(s)	355
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	4 cut(s)	694, 738, 838, 913
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HindIII	AAGCTT	1 cut(s)	226
HinfI	GANTC	6 cut(s)	479, 566, 634, 653, 762, 955
HpaII	CCGG	1 cut(s)	806
Hpy166II	GTNNAC	1 cut(s)	905
Hpy188I	TCNGA	4 cut(s)	277, 471, 571, 887
Hpy188III	TCNNGA	6 cut(s)	524, 661, 691, 826, 866, 959
Hpy8I	GTNNAC	1 cut(s)	905
HpyAV	CCTTC	5 cut(s)	280, 613, 658, 752, 863
HpyCH4III	ACNGT	3 cut(s)	300, 383, 822
HpyCH4IV	ACGT	1 cut(s)	673
HpyCH4V	TGCA	7 cut(s)	107, 329, 545, 738, 779, 851, 952
HpyF10VI	GCNNNNNNNGC	5 cut(s)	64, 335, 551, 560, 802
HpyF3I	CTNAG	6 cut(s)	51, 187, 234, 276, 638, 659
HpySE526I	ACGT	1 cut(s)	673
Hsp92II	CATG	4 cut(s)	694, 738, 838, 913
HspAI	GCGC	1 cut(s)	29
KflI	GGGWCCC	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	882
Kzo9I	GATC	6 cut(s)	7, 466, 679, 862, 882, 936
LpnPI	CCDG	7 cut(s)	225, 413, 537, 646, 753, 819, 944
Lsp1109I	GCAGC	4 cut(s)	13, 119, 443, 791
LweI	GCATC	3 cut(s)	67, 70, 109
MaeI	CTAG	3 cut(s)	20, 318, 723
MaeII	ACGT	1 cut(s)	673
MaeIII	GTNAC	3 cut(s)	313, 669, 874
MalI	GATC	6 cut(s)	9, 468, 681, 864, 884, 938
MboI	GATC	6 cut(s)	7, 466, 679, 862, 882, 936
MboII	GAAGA	4 cut(s)	150, 821, 869, 872
MfeI	CAATTG	1 cut(s)	32
MflI	RGATCY	1 cut(s)	862
MhlI	GDGCHC	1 cut(s)	798
MluCI	AATT	8 cut(s)	32, 43, 72, 220, 519, 540, 694, 962
MlyI	GAGTC	2 cut(s)	575, 647
Mph1103I	ATGCAT	1 cut(s)	740
MseI	TTAA	2 cut(s)	489, 516
MslI	CAYNNNNRTG	1 cut(s)	210
MspI	CCGG	1 cut(s)	806
MunI	CAATTG	1 cut(s)	32
MwoI	GCNNNNNNNGC	5 cut(s)	64, 335, 551, 560, 802
NdeII	GATC	6 cut(s)	7, 466, 679, 862, 882, 936
NlaIII	CATG	4 cut(s)	694, 738, 838, 913
NlaIV	GGNNCC	3 cut(s)	194, 195, 260
NmuCI	GTSAC	2 cut(s)	313, 874
NsbI	TGCGCA	1 cut(s)	30
NsiI	ATGCAT	1 cut(s)	740
NspI	RCATGY	2 cut(s)	738, 913
PaeI	GCATGC	1 cut(s)	738
PaeR7I	CTCGAG	1 cut(s)	263
PagI	TCATGA	1 cut(s)	690
PciI	ACATGT	1 cut(s)	909
PfeI	GAWTC	4 cut(s)	479, 634, 762, 955
PkrI	GCNGC	5 cut(s)	28, 57, 109, 433, 781
PleI	GAGTC	2 cut(s)	574, 647
PpsI	GAGTC	2 cut(s)	574, 647
PpuMI	RGGWCCY	2 cut(s)	193, 259
PscI	ACATGT	1 cut(s)	909
Psp5II	RGGWCCY	2 cut(s)	193, 259
PspN4I	GGNNCC	3 cut(s)	194, 195, 260
PspPI	GGNCC	3 cut(s)	193, 259, 902
PspPPI	RGGWCCY	2 cut(s)	193, 259
PspXI	VCTCGAGB	1 cut(s)	263
PstI	CTGCAG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	862
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	489, 516
SatI	GCNGC	5 cut(s)	27, 56, 108, 432, 780
Sau3AI	GATC	6 cut(s)	7, 466, 679, 862, 882, 936
Sau96I	GGNCC	3 cut(s)	193, 259, 902
SchI	GAGTC	2 cut(s)	575, 647
SduI	GDGCHC	1 cut(s)	798
SfaNI	GCATC	3 cut(s)	67, 70, 109
SfcI	CTRYAG	2 cut(s)	133, 327
Sfr274I	CTCGAG	1 cut(s)	263
SinI	GGWCC	3 cut(s)	193, 259, 902
SlaI	CTCGAG	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
SpeI	ACTAGT	1 cut(s)	317
SphI	GCATGC	1 cut(s)	738
Sse9I	AATT	8 cut(s)	32, 43, 72, 220, 519, 540, 694, 962
SsiI	CCGC	3 cut(s)	56, 98, 563
SspMI	CTAG	3 cut(s)	20, 318, 723
TaaI	ACNGT	3 cut(s)	300, 383, 822
TaiI	ACGT	1 cut(s)	676
TaqI	TCGA	2 cut(s)	264, 939
TasI	AATT	8 cut(s)	32, 43, 72, 220, 519, 540, 694, 962
TauI	GCSGC	1 cut(s)	58
TfiI	GAWTC	4 cut(s)	479, 634, 762, 955
Tru1I	TTAA	2 cut(s)	489, 516
Tru9I	TTAA	2 cut(s)	489, 516
TscAI	CASTG	1 cut(s)	772
TseFI	GTSAC	2 cut(s)	313, 874
TseI	GCWGC	4 cut(s)	26, 107, 431, 779
Tsp45I	GTSAC	2 cut(s)	313, 874
TspDTI	ATGAA	5 cut(s)	17, 56, 608, 694, 707
TspRI	CASTG	1 cut(s)	772
VpaK11BI	GGWCC	3 cut(s)	193, 259, 902
XapI	RAATTY	4 cut(s)	43, 220, 519, 962
XceI	RCATGY	2 cut(s)	738, 913
XhoI	CTCGAG	1 cut(s)	263
XspI	CTAG	3 cut(s)	20, 318, 723
Zsp2I	ATGCAT	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.