pycom01g09240

Cell division control protein 14, SIN component

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
10231832 .. 10233792
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1308 bp
ATGGATCCAGAGAGGATCCATTTCCGTAAAGAAGTTGGAAGGCTACAAAGTTCCCTATGCTTTGATTGCTATGATGTTGGATTAATCATTGTAGAGATTCCATATAAAGTTTTGATTCAATTCCCTCGAAATTTTAAGGGAAGACGTAAGATATGTGGATGCTTAAAATACATCCAATTGAAAACACCCCTTATTGTGATTGGTTTCAGAGATTTTGAGGCTTTTCATGGTATTGAGGAAGTTGCAGAGCTCATAAGGGACAAGCATGTTGATAAGAATCTCAGCTCTATCTGCTTAATGTCTTTTGAATTAGTCCTCTTGATAAACGAACAGTCACAAGTGAATAAAACGCAAGCAACTGTTCTGCTAAAAGATCGATCTATAAGTATTCATAATTTCTATGCAAATACATTTAAGTCGGTCAATTATTGTGTGTCTTCTAATCTAATAACGCCAAGACTAAATTTTCTTGAGAACTTGCTGTCAATAACCTTGAAGTATCGCATGGAGTATCGCACGGGGTCCAAGACAAGACAATACAATTCCACTTACATCGTGGAAATTTTGGTTTGCAAGTCCCTATTATCCTCAACTTTGGAGAAGAATCATCTATCTTGTGGGAATCATTCATCCTTCCTCTCATCCTCCAAAACGACTTTTGACTTTTTGCAATTCGTTTGGAAAATAAATGTGAATTTGTCTCTAAACATTGCAACTTGTTTGGAAAATAAATGTAAATTTATTTTCTCAAGAGTTGAGACGGTTTCTGCGATTTTTAGCTTAGTCCAAATCACAAACAGAACGAAACAATCAACGCAGAATTGTGTTGATTGTTGCAGGCTTTGTCATTATCTTGGAGAGACGAGTCATCCTCTAATTGCTACACCTACCTACAGAAAAGTAGTTGGTCCACTCGCACATGTTACATTTCCACTTGCATCGTGGAAATTTTGGTTTGTAGGTTGTTCTCAAACTTTGGAGAAGAATCATTTATTTCGTGGGAGTCATTCATCCTTCCTCTTATCCTCCAAAACAACTTTTGACTGTTTGCAACTTTTTCGGAAAAAAAATGTGAATCTTAGGCATTCTGACTATTTGCAACTTGTTTGTAAAATAAATGTAAATTTGTTCTCTCATGAGTTGAGACGGTTTCTGTGTTGTTTTCTAATTTCACAAAAAACCAAAAAAAAACTTCTAAAACATAAACAGAACAAAACAACCAACGCGGAATTTCATCCTCTAATTACTGCACCTACCTACAGAAAAGTAGCTGATCCACTCACACATGTTCCATTCTTGATCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

436

Amino Acids

50.31

Weight (kDa)

9.5

Isoelectric Point (pI)

34.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022521)

Species Orthologous Gene IDs
pyrus_communis pycom01g09240 pycom01g09250 pycom01g09260 pycom01g09370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1226
AciI CCGC 1 cut(s) 1226
AclWI GGATC 4 cut(s) 10, 12, 23, 1268
AcsI RAATTY 8 cut(s) 130, 463, 561, 694, 737, 947, 1123, 1229
AflIII ACRYGT 2 cut(s) 919, 1285
AgsI TTSAA 4 cut(s) 119, 181, 308, 496
AluBI AGCT 4 cut(s) 250, 285, 780, 1271
AluI AGCT 4 cut(s) 250, 285, 780, 1271
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 4 cut(s) 705, 752, 854, 1138
AlwI GGATC 4 cut(s) 10, 12, 23, 1268
ApoI RAATTY 8 cut(s) 130, 463, 561, 694, 737, 947, 1123, 1229
AseI ATTAAT 1 cut(s) 83
AspS9I GGNCC 2 cut(s) 522, 908
AvaII GGWCC 2 cut(s) 522, 908
BamHI GGATCC 2 cut(s) 4, 15
BanII GRGCYC 1 cut(s) 252
BbsI GAAGAC 2 cut(s) 148, 429
Bbv12I GWGCWC 1 cut(s) 252
BcgI CGANNNNNNTGC 2 cut(s) 1040, 1074
BclI TGATCA 1 cut(s) 1299
BcoDI GTCTC 4 cut(s) 705, 752, 854, 1138
BfmI CTRYAG 2 cut(s) 892, 1258
Bme18I GGWCC 2 cut(s) 522, 908
BmgT120I GGNCC 2 cut(s) 522, 908
BmiI GGNNCC 3 cut(s) 6, 17, 523
BmsI GCATC 2 cut(s) 149, 947
BpiI GAAGAC 2 cut(s) 148, 429
BplI GAGNNNNNCTC 2 cut(s) 856, 888
BpuEI CTTGAG 2 cut(s) 491, 733
Bsa29I ATCGAT 1 cut(s) 376
BsaBI GATNNNNATC 1 cut(s) 276
Bse3DI GCAATG 1 cut(s) 708
Bse8I GATNNNNATC 1 cut(s) 276
BseCI ATCGAT 1 cut(s) 376
BseGI GGATG 7 cut(s) 164, 171, 629, 641, 868, 1010, 1234
BseJI GATNNNNATC 1 cut(s) 276
BseMI GCAATG 1 cut(s) 708
BseMII CTCAG 1 cut(s) 295
BsgI GTGCAG 1 cut(s) 1233
Bsh1236I CGCG 1 cut(s) 1226
BshVI ATCGAT 1 cut(s) 376
BsiHKAI GWGCWC 1 cut(s) 252
BslFI GGGAC 2 cut(s) 272, 562
BsmAI GTCTC 4 cut(s) 705, 752, 854, 1138
BsmBI CGTCTC 3 cut(s) 752, 854, 1138
BsmFI GGGAC 2 cut(s) 272, 562
BsmI GAATGC 1 cut(s) 1084
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 6 cut(s) 4, 15, 373, 377, 1273, 1299
BspACI CCGC 1 cut(s) 1226
BspCNI CTCAG 1 cut(s) 294
BspDI ATCGAT 1 cut(s) 376
BspFNI CGCG 1 cut(s) 1226
BspHI TCATGA 1 cut(s) 1135
BspLI GGNNCC 3 cut(s) 6, 17, 523
BspPI GGATC 4 cut(s) 10, 12, 23, 1268
BsrDI GCAATG 1 cut(s) 708
BssMI GATC 6 cut(s) 4, 15, 373, 377, 1273, 1299
Bst4CI ACNGT 5 cut(s) 333, 361, 763, 1046, 1149
BstC8I GCNNGC 2 cut(s) 354, 839
BstDEI CTNAG 3 cut(s) 281, 781, 1079
BstF5I GGATG 7 cut(s) 164, 171, 629, 641, 868, 1010, 1234
BstFNI CGCG 1 cut(s) 1226
BstKTI GATC 6 cut(s) 7, 18, 376, 380, 1276, 1302
BstMAI GTCTC 4 cut(s) 705, 752, 854, 1138
BstMBI GATC 6 cut(s) 4, 15, 373, 377, 1273, 1299
BstMWI GCNNNNNNNGC 2 cut(s) 66, 291
BstNSI RCATGY 3 cut(s) 269, 923, 1289
BstSFI CTRYAG 2 cut(s) 892, 1258
BstUI CGCG 1 cut(s) 1226
BstV2I GAAGAC 2 cut(s) 148, 429
BstX2I RGATCY 2 cut(s) 4, 15
BstYI RGATCY 2 cut(s) 4, 15
Bsu15I ATCGAT 1 cut(s) 376
BsuTUI ATCGAT 1 cut(s) 376
BtsCI GGATG 7 cut(s) 164, 171, 629, 641, 868, 1010, 1234
Cac8I GCNNGC 2 cut(s) 354, 839
CciI TCATGA 1 cut(s) 1135
Cfr13I GGNCC 2 cut(s) 522, 908
ClaI ATCGAT 1 cut(s) 376
CviAII CATG 6 cut(s) 227, 266, 505, 920, 1136, 1286
CviJI RGCY 7 cut(s) 43, 221, 250, 285, 780, 841, 1271
CviKI_1 RGCY 7 cut(s) 43, 221, 250, 285, 780, 841, 1271
DdeI CTNAG 3 cut(s) 281, 781, 1079
DpnI GATC 6 cut(s) 6, 17, 375, 379, 1275, 1301
DpnII GATC 6 cut(s) 4, 15, 373, 377, 1273, 1299
Ecl136II GAGCTC 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 252
Eco47I GGWCC 2 cut(s) 522, 908
Eco53kI GAGCTC 1 cut(s) 250
EcoICRI GAGCTC 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 252
Esp3I CGTCTC 3 cut(s) 752, 854, 1138
FaeI CATG 6 cut(s) 230, 269, 508, 923, 1139, 1289
FaqI GGGAC 2 cut(s) 272, 562
FatI CATG 6 cut(s) 226, 265, 504, 919, 1135, 1285
FbaI TGATCA 1 cut(s) 1299
FokI GGATG 7 cut(s) 158, 171, 616, 628, 855, 997, 1221
FriOI GRGCYC 1 cut(s) 252
Hin1II CATG 6 cut(s) 230, 269, 508, 923, 1139, 1289
HinfI GANTC 9 cut(s) 97, 115, 277, 604, 622, 865, 985, 1003, 1075
Hpy166II GTNNAC 1 cut(s) 911
Hpy188I TCNGA 3 cut(s) 209, 1062, 1090
Hpy188III TCNNGA 6 cut(s) 8, 319, 470, 750, 1136, 1297
Hpy8I GTNNAC 1 cut(s) 911
HpyAV CCTTC 3 cut(s) 33, 643, 1024
HpyCH4III ACNGT 5 cut(s) 333, 361, 763, 1046, 1149
HpyCH4IV ACGT 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 291
HpyF3I CTNAG 3 cut(s) 281, 781, 1079
HpySE526I ACGT 1 cut(s) 145
Hsp92II CATG 6 cut(s) 230, 269, 508, 923, 1139, 1289
Ksp22I TGATCA 1 cut(s) 1299
Kzo9I GATC 6 cut(s) 4, 15, 373, 377, 1273, 1299
LpnPI CCDG 2 cut(s) 21, 823
LweI GCATC 2 cut(s) 149, 947
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 2 cut(s) 333, 922
MalI GATC 6 cut(s) 6, 17, 375, 379, 1275, 1301
MboI GATC 6 cut(s) 4, 15, 373, 377, 1273, 1299
MboII GAAGA 4 cut(s) 153, 429, 613, 994
MfeI CAATTG 1 cut(s) 176
MflI RGATCY 2 cut(s) 4, 15
MhlI GDGCHC 1 cut(s) 252
MlyI GAGTC 2 cut(s) 874, 1012
MmeI TCCRAC 2 cut(s) 16, 58
MseI TTAA 5 cut(s) 83, 135, 164, 296, 414
MunI CAATTG 1 cut(s) 176
Mva1269I GAATGC 1 cut(s) 1084
MvnI CGCG 1 cut(s) 1226
MwoI GCNNNNNNNGC 2 cut(s) 66, 291
NdeII GATC 6 cut(s) 4, 15, 373, 377, 1273, 1299
NlaIII CATG 6 cut(s) 230, 269, 508, 923, 1139, 1289
NlaIV GGNNCC 3 cut(s) 6, 17, 523
NmuCI GTSAC 1 cut(s) 333
NspI RCATGY 3 cut(s) 269, 923, 1289
PagI TCATGA 1 cut(s) 1135
PciI ACATGT 2 cut(s) 919, 1285
PcsI WCGNNNNNNNCGW 1 cut(s) 767
PctI GAATGC 1 cut(s) 1084
PfeI GAWTC 7 cut(s) 97, 115, 277, 604, 622, 985, 1075
PleI GAGTC 2 cut(s) 873, 1011
PpsI GAGTC 2 cut(s) 873, 1011
PscI ACATGT 2 cut(s) 919, 1285
PshBI ATTAAT 1 cut(s) 83
Psp124BI GAGCTC 1 cut(s) 252
PspN4I GGNNCC 3 cut(s) 6, 17, 523
PspPI GGNCC 2 cut(s) 522, 908
PsuI RGATCY 2 cut(s) 4, 15
SacI GAGCTC 1 cut(s) 252
SaqAI TTAA 5 cut(s) 83, 135, 164, 296, 414
Sau3AI GATC 6 cut(s) 4, 15, 373, 377, 1273, 1299
Sau96I GGNCC 2 cut(s) 522, 908
SchI GAGTC 2 cut(s) 874, 1012
SduI GDGCHC 1 cut(s) 252
SfaNI GCATC 2 cut(s) 149, 947
SfcI CTRYAG 2 cut(s) 892, 1258
SinI GGWCC 2 cut(s) 522, 908
SmlI CTYRAG 2 cut(s) 470, 748
SmoI CTYRAG 2 cut(s) 470, 748
SsiI CCGC 1 cut(s) 1226
SstI GAGCTC 1 cut(s) 252
TaaI ACNGT 5 cut(s) 333, 361, 763, 1046, 1149
TaiI ACGT 1 cut(s) 148
TaqI TCGA 2 cut(s) 127, 376
TaqII GACCGA 1 cut(s) 409
TfiI GAWTC 7 cut(s) 97, 115, 277, 604, 622, 985, 1075
Tru1I TTAA 5 cut(s) 83, 135, 164, 296, 414
Tru9I TTAA 5 cut(s) 83, 135, 164, 296, 414
TseFI GTSAC 1 cut(s) 333
Tsp45I GTSAC 1 cut(s) 333
TspDTI ATGAA 5 cut(s) 215, 380, 618, 999, 1223
TspGWI ACGGA 1 cut(s) 14
VpaK11BI GGWCC 2 cut(s) 522, 908
VspI ATTAAT 1 cut(s) 83
XapI RAATTY 8 cut(s) 130, 463, 561, 694, 737, 947, 1123, 1229
XceI RCATGY 3 cut(s) 269, 923, 1289
XcmI CCANNNNNNNNNTGG 2 cut(s) 553, 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.