pycom01g09250

Cell division control protein 14, SIN component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0022521
Physical Location & Seq
Forward (+)
10235111 .. 10236700
1590 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1140 bp
ATGCTCTTAGTACTTGATGAGTGGAGAAATAATTTTGCTTTTATCGTTGCACATGAATCCCTGCAATGGATGCCTAGAGAGGATTTTACATTATCAACAGGTCGTGGAGATATTCAAGTACACTTCAAGTTCTCAAATATTGTAAACGATTGTTGTTTAACAATGCCCTCATCTATACAGATTTTTTGGCTTCATCCCTGCCTGCATCTACCATTCAATTGGAGACGGAGATTGAAAGATTCATGCCAAATGGTAAGGCAAATACATGTAATAAATTCAAGACAAAAAATCACTAAGTCAAGTCAATACATTTCTTGTCTCAGTTTGTATGAAAAAGTTTTTCCTTCTAATACCGTGGGATTTTTTATTTTGCATTGTGGAAATTTGGATTTTGTTCCGCTTTTTTCCAGTGATTCCGGCAACTATTTTCATCGAGTGAGGTATTACGCGAATAAAAATAAAATAAACAAAAATAAACTGAAACAAGAATTGGAAATCGATTTATTAAATATACGAGTCAAATACACAATAAATCAGAGTTTACCAAAATACAATAATCACCATTCGACTTCACTCGACTCCCTGGTCACTGAGGTGAAAATTATACTGGAAATGGATCCTCTCCGGATCCATTCCCACCTAATCCACCTATTCCGGAATCCGGACTGTTCAAATTTGATCCAACGGCTAAAGTTATTATCACTTTTAAAGGAGCCCCATGTTTGTAACCGTTGGATCAAATTTGAACGAGGATCCATTTCCGTAAAGAAGTTGGAAGGCTACAAAGTTCCCTATGCTTTGATTCCATATAAAGTTTTGATTCAATTTCCTCGAAATCTTAAGGGAAGACGTGAGATATGTGGATGCTTAAAATACATCCAATTGAAAACACCCCTTATTGTGATTGGTTTCAGAGATTTTGAGGCTTTTCATGGTATTGAGGAAGTTGCAGAGCTCATAAGGGACAAGCATGTTGATAAGAATCTCAGCTCTCTCTGCTTAATGTCTTTTGAATTAGTCCTCTTGATAAACGAACAGTCACAAGTGATTAAAACGCAAGGAACTGTTCTGCTAAAAGACCATAAGTATTGTCTTGATCGATCAAATGACAGTGATGATTCTTCACTAACAGCAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC14

Protein Analysis

380

Amino Acids

44.37

Weight (kDa)

9.15

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022521)

Species Orthologous Gene IDs
pyrus_communis pycom01g09240 pycom01g09250 pycom01g09260 pycom01g09370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 584
AccII CGCG 1 cut(s) 449
AccIII TCCGGA 3 cut(s) 624, 654, 661
AciI CCGC 1 cut(s) 398
AclWI GGATC 8 cut(s) 611, 622, 624, 635, 673, 743, 747, 760
AcsI RAATTY 4 cut(s) 274, 382, 673, 740
AfaI GTAC 2 cut(s) 12, 120
AfiI CCNNNNNNNGG 2 cut(s) 66, 661
AflII CTTAAG 1 cut(s) 839
AflIII ACRYGT 1 cut(s) 265
AjiI CACGTC 1 cut(s) 851
AjnI CCWGG 1 cut(s) 582
AjuI GAANNNNNNNTTGG 2 cut(s) 473, 505
AleI CACNNNNGTG 1 cut(s) 593
AluBI AGCT 2 cut(s) 955, 990
AluI AGCT 2 cut(s) 955, 990
Alw21I GWGCWC 1 cut(s) 957
Alw26I GTCTC 2 cut(s) 217, 323
AlwI GGATC 8 cut(s) 611, 622, 624, 635, 673, 743, 747, 760
Aor13HI TCCGGA 3 cut(s) 624, 654, 661
ApoI RAATTY 4 cut(s) 274, 382, 673, 740
AsuHPI GGTGA 2 cut(s) 551, 607
BamHI GGATCC 3 cut(s) 616, 627, 752
BanII GRGCYC 2 cut(s) 717, 957
BbsI GAAGAC 1 cut(s) 853
Bbv12I GWGCWC 1 cut(s) 957
BceAI ACGGC 1 cut(s) 701
BciT130I CCWGG 1 cut(s) 584
BcoDI GTCTC 2 cut(s) 217, 323
BfaI CTAG 1 cut(s) 75
BfrI CTTAAG 1 cut(s) 839
BmcAI AGTACT 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 584
BmgBI CACGTC 1 cut(s) 851
BmiI GGNNCC 4 cut(s) 618, 629, 714, 754
BmrFI CCNGG 1 cut(s) 584
BmsI GCATC 3 cut(s) 60, 214, 854
BpiI GAAGAC 1 cut(s) 853
Bsa29I ATCGAT 2 cut(s) 498, 1099
BsaBI GATNNNNATC 1 cut(s) 981
BsaJI CCNNGG 2 cut(s) 354, 582
BsaWI WCCGGW 3 cut(s) 624, 654, 661
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 661
Bse1I ACTGG 2 cut(s) 408, 612
Bse3DI GCAATG 1 cut(s) 71
Bse8I GATNNNNATC 1 cut(s) 981
BseAI TCCGGA 3 cut(s) 624, 654, 661
BseBI CCWGG 1 cut(s) 584
BseCI ATCGAT 2 cut(s) 498, 1099
BseDI CCNNGG 2 cut(s) 354, 582
BseGI GGATG 4 cut(s) 75, 193, 869, 876
BseJI GATNNNNATC 1 cut(s) 981
BseLI CCNNNNNNNGG 2 cut(s) 66, 661
BseMI GCAATG 1 cut(s) 71
BseMII CTCAG 3 cut(s) 334, 582, 1000
BseNI ACTGG 2 cut(s) 408, 612
Bsh1236I CGCG 1 cut(s) 449
BshVI ATCGAT 2 cut(s) 498, 1099
BsiHKAI GWGCWC 1 cut(s) 957
BsiSI CCGG 4 cut(s) 417, 625, 655, 662
BslFI GGGAC 1 cut(s) 977
BslI CCNNNNNNNGG 2 cut(s) 66, 661
BsmAI GTCTC 2 cut(s) 217, 323
BsmBI CGTCTC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 977
Bsp1286I GDGCHC 2 cut(s) 717, 957
Bsp13I TCCGGA 3 cut(s) 624, 654, 661
Bsp143I GATC 7 cut(s) 616, 627, 678, 735, 752, 1096, 1100
BspACI CCGC 1 cut(s) 398
BspCNI CTCAG 3 cut(s) 333, 583, 999
BspDI ATCGAT 2 cut(s) 498, 1099
BspEI TCCGGA 3 cut(s) 624, 654, 661
BspFNI CGCG 1 cut(s) 449
BspLI GGNNCC 4 cut(s) 618, 629, 714, 754
BspPI GGATC 8 cut(s) 611, 622, 624, 635, 673, 743, 747, 760
BspTI CTTAAG 1 cut(s) 839
BsrDI GCAATG 1 cut(s) 71
BsrI ACTGG 2 cut(s) 408, 612
BssECI CCNNGG 2 cut(s) 354, 582
BssMI GATC 7 cut(s) 616, 627, 678, 735, 752, 1096, 1100
Bst2UI CCWGG 1 cut(s) 584
Bst4CI ACNGT 6 cut(s) 355, 668, 731, 1038, 1066, 1112
BstAFI CTTAAG 1 cut(s) 839
BstAPI GCANNNNNTGC 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 203
BstDEI CTNAG 5 cut(s) 7, 294, 320, 591, 986
BstDSI CCRYGG 1 cut(s) 354
BstF5I GGATG 4 cut(s) 75, 193, 869, 876
BstFNI CGCG 1 cut(s) 449
BstKTI GATC 7 cut(s) 619, 630, 681, 738, 755, 1099, 1103
BstMAI GTCTC 2 cut(s) 217, 323
BstMBI GATC 7 cut(s) 616, 627, 678, 735, 752, 1096, 1100
BstMWI GCNNNNNNNGC 2 cut(s) 70, 996
BstNI CCWGG 1 cut(s) 584
BstNSI RCATGY 2 cut(s) 269, 974
BstSCI CCNGG 1 cut(s) 582
BstUI CGCG 1 cut(s) 449
BstV2I GAAGAC 1 cut(s) 853
BstX2I RGATCY 3 cut(s) 616, 627, 752
BstXI CCANNNNNNTGG 1 cut(s) 219
BstYI RGATCY 3 cut(s) 616, 627, 752
Bsu15I ATCGAT 2 cut(s) 498, 1099
BsuTUI ATCGAT 2 cut(s) 498, 1099
BtgI CCRYGG 1 cut(s) 354
BtrI CACGTC 1 cut(s) 851
BtsCI GGATG 4 cut(s) 75, 193, 869, 876
BtsIMutI CAGTG 3 cut(s) 415, 588, 1117
Cac8I GCNNGC 1 cut(s) 203
ClaI ATCGAT 2 cut(s) 498, 1099
Csp6I GTAC 2 cut(s) 11, 119
CviAII CATG 6 cut(s) 53, 243, 266, 719, 932, 971
CviJI RGCY 7 cut(s) 190, 688, 715, 780, 926, 955, 990
CviKI_1 RGCY 7 cut(s) 190, 688, 715, 780, 926, 955, 990
CviQI GTAC 2 cut(s) 11, 119
DdeI CTNAG 5 cut(s) 7, 294, 320, 591, 986
DpnI GATC 7 cut(s) 618, 629, 680, 737, 754, 1098, 1102
DpnII GATC 7 cut(s) 616, 627, 678, 735, 752, 1096, 1100
DraI TTTAAA 1 cut(s) 708
DrdI GACNNNNNNGTC 1 cut(s) 584
DseDI GACNNNNNNGTC 1 cut(s) 584
Ecl136II GAGCTC 1 cut(s) 955
Eco24I GRGCYC 2 cut(s) 717, 957
Eco53kI GAGCTC 1 cut(s) 955
EcoICRI GAGCTC 1 cut(s) 955
EcoRII CCWGG 1 cut(s) 582
EcoT38I GRGCYC 2 cut(s) 717, 957
Esp3I CGTCTC 1 cut(s) 217
FaeI CATG 6 cut(s) 56, 246, 269, 722, 935, 974
FaqI GGGAC 1 cut(s) 977
FatI CATG 6 cut(s) 52, 242, 265, 718, 931, 970
FokI GGATG 4 cut(s) 82, 180, 863, 876
FriOI GRGCYC 2 cut(s) 717, 957
FspBI CTAG 1 cut(s) 75
HapII CCGG 4 cut(s) 417, 625, 655, 662
Hin1II CATG 6 cut(s) 56, 246, 269, 722, 935, 974
HpaII CCGG 4 cut(s) 417, 625, 655, 662
HphI GGTGA 2 cut(s) 551, 607
Hpy166II GTNNAC 3 cut(s) 121, 145, 542
Hpy188I TCNGA 2 cut(s) 537, 914
Hpy188III TCNNGA 6 cut(s) 279, 625, 655, 662, 1024, 1094
Hpy8I GTNNAC 3 cut(s) 121, 145, 542
HpyAV CCTTC 2 cut(s) 354, 770
HpyCH4III ACNGT 6 cut(s) 355, 668, 731, 1038, 1066, 1112
HpyCH4IV ACGT 1 cut(s) 850
HpyCH4V TGCA 5 cut(s) 50, 64, 205, 373, 950
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 996
HpyF3I CTNAG 5 cut(s) 7, 294, 320, 591, 986
HpySE526I ACGT 1 cut(s) 850
Hsp92II CATG 6 cut(s) 56, 246, 269, 722, 935, 974
Kpn2I TCCGGA 3 cut(s) 624, 654, 661
Kzo9I GATC 7 cut(s) 616, 627, 678, 735, 752, 1096, 1100
LmnI GCTCC 1 cut(s) 712
LweI GCATC 3 cut(s) 60, 214, 854
MaeI CTAG 1 cut(s) 75
MaeII ACGT 1 cut(s) 850
MaeIII GTNAC 3 cut(s) 586, 725, 1038
MalI GATC 7 cut(s) 618, 629, 680, 737, 754, 1098, 1102
MboI GATC 7 cut(s) 616, 627, 678, 735, 752, 1096, 1100
MboII GAAGA 2 cut(s) 858, 1113
MfeI CAATTG 2 cut(s) 217, 881
MflI RGATCY 3 cut(s) 616, 627, 752
MhlI GDGCHC 2 cut(s) 717, 957
MlyI GAGTC 2 cut(s) 525, 572
MmeI TCCRAC 3 cut(s) 706, 713, 753
MroI TCCGGA 3 cut(s) 624, 654, 661
MseI TTAA 7 cut(s) 158, 506, 707, 840, 869, 1001, 1050
MslI CAYNNNNRTG 1 cut(s) 593
MspCI CTTAAG 1 cut(s) 839
MspI CCGG 4 cut(s) 417, 625, 655, 662
MspR9I CCNGG 1 cut(s) 584
MunI CAATTG 2 cut(s) 217, 881
MvaI CCWGG 1 cut(s) 584
MvnI CGCG 1 cut(s) 449
MwoI GCNNNNNNNGC 2 cut(s) 70, 996
NdeII GATC 7 cut(s) 616, 627, 678, 735, 752, 1096, 1100
NlaIII CATG 6 cut(s) 56, 246, 269, 722, 935, 974
NlaIV GGNNCC 4 cut(s) 618, 629, 714, 754
NmuCI GTSAC 2 cut(s) 586, 1038
NspI RCATGY 2 cut(s) 269, 974
OliI CACNNNNGTG 1 cut(s) 593
PciI ACATGT 1 cut(s) 265
PfeI GAWTC 8 cut(s) 56, 239, 413, 658, 802, 820, 982, 1118
PleI GAGTC 2 cut(s) 524, 572
PpsI GAGTC 2 cut(s) 524, 572
PscI ACATGT 1 cut(s) 265
Psp124BI GAGCTC 1 cut(s) 957
Psp6I CCWGG 1 cut(s) 582
PspGI CCWGG 1 cut(s) 582
PspN4I GGNNCC 4 cut(s) 618, 629, 714, 754
PsuI RGATCY 3 cut(s) 616, 627, 752
RsaI GTAC 2 cut(s) 12, 120
RsaNI GTAC 2 cut(s) 11, 119
RseI CAYNNNNRTG 1 cut(s) 593
SacI GAGCTC 1 cut(s) 957
SaqAI TTAA 7 cut(s) 158, 506, 707, 840, 869, 1001, 1050
Sau3AI GATC 7 cut(s) 616, 627, 678, 735, 752, 1096, 1100
ScaI AGTACT 1 cut(s) 12
SchI GAGTC 2 cut(s) 525, 572
ScrFI CCNGG 1 cut(s) 584
SduI GDGCHC 2 cut(s) 717, 957
SetI ASST 8 cut(s) 103, 443, 597, 642, 651, 853, 957, 992
SfaNI GCATC 3 cut(s) 60, 214, 854
SmiMI CAYNNNNRTG 1 cut(s) 593
SmlI CTYRAG 1 cut(s) 839
SmoI CTYRAG 1 cut(s) 839
SsiI CCGC 1 cut(s) 398
SspI AATATT 1 cut(s) 139
SspMI CTAG 1 cut(s) 75
SstI GAGCTC 1 cut(s) 957
StyD4I CCNGG 1 cut(s) 582
TaaI ACNGT 6 cut(s) 355, 668, 731, 1038, 1066, 1112
TaiI ACGT 1 cut(s) 853
TaqI TCGA 6 cut(s) 433, 498, 566, 576, 832, 1099
TatI WGTACW 2 cut(s) 10, 118
TfiI GAWTC 8 cut(s) 56, 239, 413, 658, 802, 820, 982, 1118
Tru1I TTAA 7 cut(s) 158, 506, 707, 840, 869, 1001, 1050
Tru9I TTAA 7 cut(s) 158, 506, 707, 840, 869, 1001, 1050
TscAI CASTG 3 cut(s) 415, 595, 1117
TseFI GTSAC 2 cut(s) 586, 1038
Tsp45I GTSAC 2 cut(s) 586, 1038
TspDTI ATGAA 6 cut(s) 69, 182, 231, 345, 419, 920
TspGWI ACGGA 2 cut(s) 241, 751
TspRI CASTG 3 cut(s) 415, 595, 1117
Vha464I CTTAAG 1 cut(s) 839
XapI RAATTY 4 cut(s) 274, 382, 673, 740
XceI RCATGY 2 cut(s) 269, 974
XspI CTAG 1 cut(s) 75
ZrmI AGTACT 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.