pycom01g09310

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Reverse (-)
10255222 .. 10255632
411 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 411 bp
ATGCTTAGCAAAAACTTGGTGTTTCTTTGTTGTTTTCAACACCACTTAGAAATCATCCAGGAAGAGAAGTTGGACCCTTTGAAAAATTCAACTGACGATCCACGCATCCGTCTTTTGAATCGATTATATGCAAGAAAGAGGAGGGAGCTTCAGGAAAGAGAGAAATTGAAGGTGACTTTGGTATTTGATGAATCTGAATTCAAAATGTATTTACATAATACGTTTTCTGGCTTTTATACTATGCTAAATAATATATCCTTCTTAGTGGTAGTCATTATTGAACCTTCCATGCTTTTCAGAATGCCGAGCTCGAAGAAGAGCAAAACGATGAACGTTCAGTTGATGATCTCTTGTCATTCATTAATGGAGAAATTGGAGGTATACCTGAGTAATTGCTCTCTTATTCCTTGA

Protein Analysis

137

Amino Acids

16.15

Weight (kDa)

8.93

Isoelectric Point (pI)

52.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 381
AclI AACGTT 1 cut(s) 333
AclWI GGATC 1 cut(s) 92
AcsI RAATTY 2 cut(s) 85, 197
AcuI CTGAAG 1 cut(s) 134
AgsI TTSAA 7 cut(s) 38, 82, 90, 118, 169, 202, 281
AjnI CCWGG 1 cut(s) 57
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AluBI AGCT 2 cut(s) 148, 309
AluI AGCT 2 cut(s) 148, 309
Alw21I GWGCWC 1 cut(s) 311
AlwI GGATC 1 cut(s) 92
ApoI RAATTY 2 cut(s) 85, 197
AseI ATTAAT 1 cut(s) 362
AspS9I GGNCC 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 184
AvaII GGWCC 1 cut(s) 73
BanII GRGCYC 1 cut(s) 311
Bbv12I GWGCWC 1 cut(s) 311
BciT130I CCWGG 1 cut(s) 59
BlpI GCTNAGC 1 cut(s) 5
Bme1390I CCNGG 1 cut(s) 59
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 59
BmsI GCATC 1 cut(s) 114
Bpu1102I GCTNAGC 1 cut(s) 5
Bsa29I ATCGAT 1 cut(s) 121
BseBI CCWGG 1 cut(s) 59
BseCI ATCGAT 1 cut(s) 121
BseGI GGATG 2 cut(s) 54, 105
BseMII CTCAG 1 cut(s) 377
BseRI GAGGAG 1 cut(s) 154
BshVI ATCGAT 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 311
BsmI GAATGC 1 cut(s) 306
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 2 cut(s) 97, 345
Bsp1720I GCTNAGC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 378
BspDI ATCGAT 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 75
BspPI GGATC 1 cut(s) 92
BspQI GCTCTTC 1 cut(s) 311
BssMI GATC 2 cut(s) 97, 345
BssNAI GTATAC 1 cut(s) 382
Bst1107I GTATAC 1 cut(s) 382
Bst2UI CCWGG 1 cut(s) 59
Bst6I CTCTTC 2 cut(s) 57, 311
BstDEI CTNAG 4 cut(s) 5, 46, 262, 386
BstF5I GGATG 2 cut(s) 54, 105
BstKTI GATC 2 cut(s) 100, 348
BstMBI GATC 2 cut(s) 97, 345
BstNI CCWGG 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 57
BstZ17I GTATAC 1 cut(s) 382
Bsu15I ATCGAT 1 cut(s) 121
BsuTUI ATCGAT 1 cut(s) 121
BtsCI GGATG 2 cut(s) 54, 105
Cfr13I GGNCC 1 cut(s) 73
ClaI ATCGAT 1 cut(s) 121
CviAII CATG 1 cut(s) 289
CviJI RGCY 3 cut(s) 148, 231, 309
CviKI_1 RGCY 3 cut(s) 148, 231, 309
DdeI CTNAG 4 cut(s) 5, 46, 262, 386
DpnI GATC 2 cut(s) 99, 347
DpnII GATC 2 cut(s) 97, 345
Eam1104I CTCTTC 2 cut(s) 57, 311
EarI CTCTTC 2 cut(s) 57, 311
Ecl136II GAGCTC 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 73
Eco53kI GAGCTC 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 309
EcoRI GAATTC 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 311
FaeI CATG 1 cut(s) 292
FaiI YATR 8 cut(s) 127, 129, 216, 237, 242, 254, 290, 382
FatI CATG 1 cut(s) 288
FblI GTMKAC 1 cut(s) 381
FokI GGATG 2 cut(s) 41, 92
FriOI GRGCYC 1 cut(s) 311
Hin1II CATG 1 cut(s) 292
HinfI GANTC 2 cut(s) 118, 191
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 1 cut(s) 382
Hpy188I TCNGA 2 cut(s) 196, 299
Hpy188III TCNNGA 1 cut(s) 152
Hpy8I GTNNAC 1 cut(s) 382
HpyAV CCTTC 3 cut(s) 163, 268, 294
HpyCH4IV ACGT 2 cut(s) 221, 333
HpyCH4V TGCA 1 cut(s) 131
HpyF3I CTNAG 4 cut(s) 5, 46, 262, 386
HpySE526I ACGT 2 cut(s) 221, 333
Hsp92II CATG 1 cut(s) 292
Kzo9I GATC 2 cut(s) 97, 345
LguI GCTCTTC 1 cut(s) 311
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 5 cut(s) 44, 71, 137, 213, 398
LweI GCATC 1 cut(s) 114
MaeII ACGT 2 cut(s) 221, 333
MaeIII GTNAC 1 cut(s) 172
MalI GATC 2 cut(s) 99, 347
MboI GATC 2 cut(s) 97, 345
MboII GAAGA 3 cut(s) 74, 325, 328
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 5 cut(s) 85, 164, 197, 371, 391
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 3 cut(s) 132, 135, 370
MseI TTAA 1 cut(s) 362
MspR9I CCNGG 1 cut(s) 59
Mva1269I GAATGC 1 cut(s) 306
MvaI CCWGG 1 cut(s) 59
NdeII GATC 2 cut(s) 97, 345
NlaIII CATG 1 cut(s) 292
NlaIV GGNNCC 1 cut(s) 75
NmeAIII GCCGAG 1 cut(s) 330
NmuCI GTSAC 1 cut(s) 172
PciSI GCTCTTC 1 cut(s) 311
PctI GAATGC 1 cut(s) 306
PfeI GAWTC 2 cut(s) 118, 191
PfoI TCCNGGA 1 cut(s) 57
PshBI ATTAAT 1 cut(s) 362
Psp124BI GAGCTC 1 cut(s) 311
Psp1406I AACGTT 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 1 cut(s) 73
SacI GAGCTC 1 cut(s) 311
SapI GCTCTTC 1 cut(s) 311
SaqAI TTAA 1 cut(s) 362
Sau3AI GATC 2 cut(s) 97, 345
Sau96I GGNCC 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 1 cut(s) 311
SetI ASST 8 cut(s) 150, 174, 224, 286, 311, 336, 381, 387
SfaNI GCATC 1 cut(s) 114
SinI GGWCC 1 cut(s) 73
Sse9I AATT 5 cut(s) 85, 164, 197, 371, 391
SstI GAGCTC 1 cut(s) 311
StyD4I CCNGG 1 cut(s) 57
TaiI ACGT 2 cut(s) 224, 336
TaqI TCGA 2 cut(s) 121, 311
TasI AATT 5 cut(s) 85, 164, 197, 371, 391
TfiI GAWTC 2 cut(s) 118, 191
Tru1I TTAA 1 cut(s) 362
Tru9I TTAA 1 cut(s) 362
TseFI GTSAC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 3 cut(s) 204, 344, 348
TspGWI ACGGA 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 73
VspI ATTAAT 1 cut(s) 362
XapI RAATTY 2 cut(s) 85, 197
XmiI GTMKAC 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.