Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10293983 .. 10294864

Gene Structure 882 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGATAAGAAAAGACAAAATTTCATGCAAATATTTAACACCAAAGTCCAACCCCAACCATATTTCCATTCTCCCTCTCACTCCCCCACTCCACACTCCAAAAAGTAGCCTAAAAAAAAGAAAGAAAAAAACTCGTTCCGAAAGAGAGCGCGATTCAGTTACGAACCATGTCGCCGCAGAAGCAACGGCGGAGCTTCCCGTCGATCTCGGCTTGCAACGCGAGCGAAACAGCATCGTACAAGTTGATCGCGGCGGACCTGGAAGGGACGCTGCTCATCTCCCGGAGCTCATTCCCTTCATGCTGGTGGCCATCGAAGCCTGCAGCCTCCTCCGCGGCCTCGTCCTCCTCCTATCCTTCCCCCTCGTCATCGTCTCCTACTTCTTCTTCTCCGAAGCCCTCGGCATCAAGATTCTTATCTTCATTTCCTTCTCCGGCCTCAAAATCCGCGACATCGAGCTCACCTCTCGCGCCGTCCTCCCCAGGTTCTATGCGGCGGATGTGAGGGCGGAGAGCTTCGAGGTGTTTGACAAGTGCAAGAGGAAGGTGGTGGTGATGGCGAATCCGACAGTGATGGTGGAGCCGTTCGCGAAGGATTTTCTGGGCGGGGACATGGTGCTGGGGACGGAGATCGAAGTGAATACGAAGACGAAGAAGGCGACCGGGTTTGTGAAGTTTTGGCGGGGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010143 GO:0012505 GO:0016020 GO:0016311 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0090447 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase HAD

Protein Analysis

230

Amino Acids

25.64

Weight (kDa)

9.76

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_RAM2_N	PF23270	99 - 224	2.9e-42	Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain
HAD	PF12710	111 - 226	2.9e-09	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	7 cut(s)	150, 219, 249, 333, 447, 468, 587
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	18
AfaI	GTAC	1 cut(s)	237
AjnI	CCWGG	2 cut(s)	256, 479
AluBI	AGCT	4 cut(s)	193, 286, 457, 513
AluI	AGCT	4 cut(s)	193, 286, 457, 513
Alw21I	GWGCWC	2 cut(s)	288, 459
Alw26I	GTCTC	1 cut(s)	376
AoxI	GGCC	3 cut(s)	306, 334, 433
ApeKI	GCWGC	2 cut(s)	269, 321
ApoI	RAATTY	1 cut(s)	18
AspLEI	GCGC	2 cut(s)	150, 470
AspS9I	GGNCC	1 cut(s)	254
AsuC2I	CCSGG	2 cut(s)	281, 661
AsuHPI	GGTGA	2 cut(s)	451, 562
AvaII	GGWCC	1 cut(s)	254
BalI	TGGCCA	1 cut(s)	308
BanII	GRGCYC	2 cut(s)	288, 459
BbsI	GAAGAC	1 cut(s)	650
Bbv12I	GWGCWC	2 cut(s)	288, 459
BbvI	GCAGC	2 cut(s)	256, 333
BccI	CCATC	3 cut(s)	317, 547, 565
BceAI	ACGGC	3 cut(s)	201, 455, 565
BciT130I	CCWGG	2 cut(s)	258, 481
BcnI	CCSGG	2 cut(s)	281, 661
BcoDI	GTCTC	1 cut(s)	376
BfmI	CTRYAG	1 cut(s)	319
BisI	GCNGC	6 cut(s)	174, 250, 270, 322, 334, 492
BlsI	GCNGC	6 cut(s)	175, 251, 271, 323, 335, 493
Bme1390I	CCNGG	4 cut(s)	258, 281, 481, 661
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	1 cut(s)	579
BmrFI	CCNGG	4 cut(s)	258, 281, 481, 661
BmsI	GCATC	2 cut(s)	240, 411
BpiI	GAAGAC	1 cut(s)	650
BplI	GAGNNNNNCTC	2 cut(s)	446, 478
BpuMI	CCSGG	2 cut(s)	281, 661
BsaBI	GATNNNNATC	1 cut(s)	413
BsaJI	CCNNGG	3 cut(s)	331, 397, 479
Bse8I	GATNNNNATC	1 cut(s)	413
BseBI	CCWGG	2 cut(s)	258, 481
BseDI	CCNNGG	3 cut(s)	331, 397, 479
BseGI	GGATG	1 cut(s)	502
BseJI	GATNNNNATC	1 cut(s)	413
BseRI	GAGGAG	2 cut(s)	317, 335
BseXI	GCAGC	2 cut(s)	256, 333
BseYI	CCCAGC	1 cut(s)	616
Bsh1236I	CGCG	7 cut(s)	150, 219, 249, 333, 447, 468, 587
Bsh1285I	CGRYCG	1 cut(s)	660
BshFI	GGCC	3 cut(s)	308, 336, 435
BsiEI	CGRYCG	1 cut(s)	660
BsiHKAI	GWGCWC	2 cut(s)	288, 459
BsiSI	CCGG	3 cut(s)	281, 432, 660
BslFI	GGGAC	3 cut(s)	278, 620, 634
BsmAI	GTCTC	1 cut(s)	376
BsmBI	CGTCTC	1 cut(s)	376
BsmFI	GGGAC	3 cut(s)	278, 620, 634
BsnI	GGCC	3 cut(s)	308, 336, 435
Bsp1286I	GDGCHC	2 cut(s)	288, 459
Bsp143I	GATC	3 cut(s)	202, 244, 627
Bsp68I	TCGCGA	1 cut(s)	587
BspANI	GGCC	3 cut(s)	308, 336, 435
BspFNI	CGCG	7 cut(s)	150, 219, 249, 333, 447, 468, 587
BspLI	GGNNCC	1 cut(s)	579
BspMAI	CTGCAG	1 cut(s)	323
BssECI	CCNNGG	3 cut(s)	331, 397, 479
BssMI	GATC	3 cut(s)	202, 244, 627
Bst2UI	CCWGG	2 cut(s)	258, 481
Bst4CI	ACNGT	1 cut(s)	568
BstC8I	GCNNGC	3 cut(s)	212, 221, 319
BstDSI	CCRYGG	1 cut(s)	331
BstF5I	GGATG	1 cut(s)	502
BstFNI	CGCG	7 cut(s)	150, 219, 249, 333, 447, 468, 587
BstHHI	GCGC	2 cut(s)	150, 470
BstKTI	GATC	3 cut(s)	205, 247, 630
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	3 cut(s)	202, 244, 627
BstMCI	CGRYCG	1 cut(s)	660
BstMWI	GCNNNNNNNGC	5 cut(s)	179, 216, 220, 314, 330
BstNI	CCWGG	2 cut(s)	258, 481
BstSCI	CCNGG	4 cut(s)	256, 279, 479, 659
BstSFI	CTRYAG	1 cut(s)	319
BstUI	CGCG	7 cut(s)	150, 219, 249, 333, 447, 468, 587
BstV1I	GCAGC	2 cut(s)	256, 333
BstV2I	GAAGAC	1 cut(s)	650
BsuRI	GGCC	3 cut(s)	308, 336, 435
BtgI	CCRYGG	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	502
BtsIMutI	CAGTG	1 cut(s)	573
BtuMI	TCGCGA	1 cut(s)	587
Cac8I	GCNNGC	3 cut(s)	212, 221, 319
CfoI	GCGC	2 cut(s)	150, 470
Cfr13I	GGNCC	1 cut(s)	254
Cfr42I	CCGCGG	1 cut(s)	334
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	236
CviAII	CATG	4 cut(s)	24, 167, 298, 610
CviQI	GTAC	1 cut(s)	236
DpnI	GATC	3 cut(s)	204, 246, 629
DpnII	GATC	3 cut(s)	202, 244, 627
EaeI	YGGCCR	1 cut(s)	306
EciI	GGCGGA	4 cut(s)	203, 267, 509, 521
Ecl136II	GAGCTC	2 cut(s)	286, 457
Eco24I	GRGCYC	2 cut(s)	288, 459
Eco47I	GGWCC	1 cut(s)	254
Eco53kI	GAGCTC	2 cut(s)	286, 457
EcoICRI	GAGCTC	2 cut(s)	286, 457
EcoRII	CCWGG	2 cut(s)	256, 479
EcoT38I	GRGCYC	2 cut(s)	288, 459
Esp3I	CGTCTC	1 cut(s)	376
FaeI	CATG	4 cut(s)	27, 170, 301, 613
FaiI	YATR	6 cut(s)	25, 60, 168, 299, 489, 611
FaqI	GGGAC	3 cut(s)	278, 620, 634
FatI	CATG	4 cut(s)	23, 166, 297, 609
FauI	CCCGC	2 cut(s)	596, 672
Fnu4HI	GCNGC	6 cut(s)	174, 250, 270, 322, 334, 492
FokI	GGATG	1 cut(s)	509
FriOI	GRGCYC	2 cut(s)	288, 459
Fsp4HI	GCNGC	6 cut(s)	174, 250, 270, 322, 334, 492
GlaI	GCGC	2 cut(s)	149, 469
GluI	GCNGC	6 cut(s)	174, 250, 270, 322, 334, 492
GsaI	CCCAGC	1 cut(s)	620
HaeIII	GGCC	3 cut(s)	308, 336, 435
HapII	CCGG	3 cut(s)	281, 432, 660
HgaI	GACGC	1 cut(s)	275
HhaI	GCGC	2 cut(s)	150, 470
Hin1II	CATG	4 cut(s)	27, 170, 301, 613
Hin6I	GCGC	2 cut(s)	148, 468
HinP1I	GCGC	2 cut(s)	148, 468
HinfI	GANTC	3 cut(s)	152, 409, 559
HpaII	CCGG	3 cut(s)	281, 432, 660
HphI	GGTGA	2 cut(s)	451, 562
Hpy188I	TCNGA	3 cut(s)	139, 391, 564
Hpy188III	TCNNGA	2 cut(s)	406, 586
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	7 cut(s)	255, 304, 364, 436, 535, 583, 646
HpyCH4III	ACNGT	1 cut(s)	568
HpyCH4V	TGCA	4 cut(s)	27, 214, 321, 534
HpyF10VI	GCNNNNNNNGC	5 cut(s)	179, 216, 220, 314, 330
Hsp92II	CATG	4 cut(s)	27, 170, 301, 613
HspAI	GCGC	2 cut(s)	148, 468
KspI	CCGCGG	1 cut(s)	334
Kzo9I	GATC	3 cut(s)	202, 244, 627
LmnI	GCTCC	3 cut(s)	190, 283, 577
Lsp1109I	GCAGC	2 cut(s)	256, 333
LweI	GCATC	2 cut(s)	240, 411
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	3 cut(s)	204, 246, 629
MboI	GATC	3 cut(s)	202, 244, 627
MboII	GAAGA	5 cut(s)	373, 376, 409, 655, 661
MhlI	GDGCHC	2 cut(s)	288, 459
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	2 cut(s)	18, 685
MluNI	TGGCCA	1 cut(s)	308
MmeI	TCCRAC	2 cut(s)	72, 587
Mox20I	TGGCCA	1 cut(s)	308
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	1 cut(s)	35
MslI	CAYNNNNRTG	1 cut(s)	302
Msp20I	TGGCCA	1 cut(s)	308
MspA1I	CMGCKG	1 cut(s)	333
MspI	CCGG	3 cut(s)	281, 432, 660
MspR9I	CCNGG	4 cut(s)	258, 281, 481, 661
MvaI	CCWGG	2 cut(s)	258, 481
MvnI	CGCG	7 cut(s)	150, 219, 249, 333, 447, 468, 587
MwoI	GCNNNNNNNGC	5 cut(s)	179, 216, 220, 314, 330
NciI	CCSGG	2 cut(s)	281, 661
NdeII	GATC	3 cut(s)	202, 244, 627
NlaIII	CATG	4 cut(s)	27, 170, 301, 613
NlaIV	GGNNCC	1 cut(s)	579
NmeAIII	GCCGAG	2 cut(s)	186, 378
NruI	TCGCGA	1 cut(s)	587
PcsI	WCGNNNNNNNCGW	1 cut(s)	653
PfeI	GAWTC	3 cut(s)	152, 409, 559
PfoI	TCCNGGA	1 cut(s)	279
PkrI	GCNGC	6 cut(s)	175, 251, 271, 323, 335, 493
Psp124BI	GAGCTC	2 cut(s)	288, 459
Psp6I	CCWGG	2 cut(s)	256, 479
PspFI	CCCAGC	1 cut(s)	616
PspGI	CCWGG	2 cut(s)	256, 479
PspN4I	GGNNCC	1 cut(s)	579
PspPI	GGNCC	1 cut(s)	254
PstI	CTGCAG	1 cut(s)	323
RruI	TCGCGA	1 cut(s)	587
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
RseI	CAYNNNNRTG	1 cut(s)	302
SacI	GAGCTC	2 cut(s)	288, 459
SacII	CCGCGG	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	6 cut(s)	174, 250, 270, 322, 334, 492
Sau3AI	GATC	3 cut(s)	202, 244, 627
Sau96I	GGNCC	1 cut(s)	254
ScrFI	CCNGG	4 cut(s)	258, 281, 481, 661
SduI	GDGCHC	2 cut(s)	288, 459
SetI	ASST	9 cut(s)	195, 259, 288, 459, 464, 485, 515, 522, 546
SfaNI	GCATC	2 cut(s)	240, 411
SfcI	CTRYAG	1 cut(s)	319
Sfr303I	CCGCGG	1 cut(s)	334
SgrBI	CCGCGG	1 cut(s)	334
SinI	GGWCC	1 cut(s)	254
SmiMI	CAYNNNNRTG	1 cut(s)	302
Sse9I	AATT	2 cut(s)	18, 685
SspI	AATATT	1 cut(s)	32
SstI	GAGCTC	2 cut(s)	288, 459
StyD4I	CCNGG	4 cut(s)	256, 279, 479, 659
TaaI	ACNGT	1 cut(s)	568
TaqI	TCGA	5 cut(s)	201, 312, 453, 516, 630
TasI	AATT	2 cut(s)	18, 685
TauI	GCSGC	4 cut(s)	176, 252, 336, 494
TfiI	GAWTC	3 cut(s)	152, 409, 559
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	1 cut(s)	573
TseI	GCWGC	2 cut(s)	269, 321
TspDTI	ATGAA	3 cut(s)	12, 286, 409
TspGWI	ACGGA	1 cut(s)	638
TspRI	CASTG	1 cut(s)	573
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.