pycom01g09360

Cell division control protein 14, SIN component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
10298206 .. 10299789
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 528 bp
ATGTTTGCGCGGAGTTCTCCTTCCTCCGTGTTCGCGGCCTCCTCAAGTTCCTCCGATCGATCGTCGAGTCTGATTCCACTATCAACCTCTTCTCTCAGACACAATCGCTCTCCGAGCTTCAAGAATTTGGATCACATATTCGGCGTTGAGCCGCTGAAGATCACGAGCCCTTCAACCGATTTCGAGGTTTCGCTTACGCTTAGGGTTTTAGAGGGTTGCTGCCTGCTTCATCCGGACAGCGCGGTTTTGGCTCATCAACACAAGGCCATTCAGGTTTTGATGAATATCTTACCGACTCGCGGCGTGATTGAGCAAGGAGCTTGTTTGGATGCTTTGATTTTTATGTTGGATGCATCAGCTAATCAAATGGATTTTGAGGCTTTTCATGGTATTGAGGAAGTTGTAGGGCTCATAAGGGACAAACAAGTTGATGAGAATCTCAGGTTGAAATTTGGAGAGTTCTTGCTGCCTCTAATTGGTCATGTAAATGGGAGGGATGGGCAACCGTTGGCAACTATACATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC14

Protein Analysis

176

Amino Acids

19.12

Weight (kDa)

5.71

Isoelectric Point (pI)

60.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC14 PF08045 58 - 156 6.7e-10 Cell division control protein 14, SIN component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 10, 35, 242, 300
AccIII TCCGGA 1 cut(s) 232
AciI CCGC 5 cut(s) 10, 35, 152, 242, 300
AclWI GGATC 1 cut(s) 138
AcsI RAATTY 2 cut(s) 124, 449
AcuI CTGAAG 1 cut(s) 176
AfiI CCNNNNNNNGG 2 cut(s) 299, 476
AgsI TTSAA 3 cut(s) 121, 174, 448
AluBI AGCT 3 cut(s) 117, 320, 359
AluI AGCT 3 cut(s) 117, 320, 359
AlwI GGATC 1 cut(s) 138
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 2 cut(s) 36, 264
ApeKI GCWGC 2 cut(s) 219, 466
ApoI RAATTY 2 cut(s) 124, 449
AspLEI GCGC 2 cut(s) 10, 242
BanII GRGCYC 2 cut(s) 170, 411
BauI CACGAG 1 cut(s) 163
BbvI GCAGC 2 cut(s) 206, 453
BccI CCATC 1 cut(s) 491
BisI GCNGC 5 cut(s) 36, 152, 220, 301, 467
BlsI GCNGC 5 cut(s) 37, 153, 221, 302, 468
BmsI GCATC 3 cut(s) 319, 340, 362
Bpu10I CCTNAGC 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 28
Bsa29I ATCGAT 1 cut(s) 58
BsaBI GATNNNNATC 2 cut(s) 284, 435
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 476
Bse8I GATNNNNATC 2 cut(s) 284, 435
BseAI TCCGGA 1 cut(s) 232
BseCI ATCGAT 1 cut(s) 58
BseGI GGATG 4 cut(s) 229, 334, 355, 502
BseJI GATNNNNATC 2 cut(s) 284, 435
BseLI CCNNNNNNNGG 2 cut(s) 299, 476
BseMII CTCAG 2 cut(s) 109, 454
BseRI GAGGAG 1 cut(s) 31
BseXI GCAGC 2 cut(s) 206, 453
Bsh1236I CGCG 4 cut(s) 10, 35, 242, 300
Bsh1285I CGRYCG 2 cut(s) 58, 62
BshFI GGCC 2 cut(s) 38, 266
BshVI ATCGAT 1 cut(s) 58
BsiEI CGRYCG 2 cut(s) 58, 62
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 1 cut(s) 431
BslI CCNNNNNNNGG 2 cut(s) 299, 476
BsmFI GGGAC 1 cut(s) 431
BsnI GGCC 2 cut(s) 38, 266
Bsp1286I GDGCHC 2 cut(s) 170, 411
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 4 cut(s) 55, 59, 130, 159
BspACI CCGC 5 cut(s) 10, 35, 152, 242, 300
BspANI GGCC 2 cut(s) 38, 266
BspCNI CTCAG 2 cut(s) 108, 453
BspDI ATCGAT 1 cut(s) 58
BspEI TCCGGA 1 cut(s) 232
BspFNI CGCG 4 cut(s) 10, 35, 242, 300
BspPI GGATC 1 cut(s) 138
BssMI GATC 4 cut(s) 55, 59, 130, 159
BssSI CACGAG 1 cut(s) 163
Bst2BI CACGAG 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 507
Bst6I CTCTTC 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 224
BstDEI CTNAG 3 cut(s) 95, 200, 440
BstF5I GGATG 4 cut(s) 229, 334, 355, 502
BstFNI CGCG 4 cut(s) 10, 35, 242, 300
BstHHI GCGC 2 cut(s) 10, 242
BstKTI GATC 4 cut(s) 58, 62, 133, 162
BstMBI GATC 4 cut(s) 55, 59, 130, 159
BstMCI CGRYCG 2 cut(s) 58, 62
BstMWI GCNNNNNNNGC 2 cut(s) 114, 248
BstUI CGCG 4 cut(s) 10, 35, 242, 300
BstV1I GCAGC 2 cut(s) 206, 453
Bsu15I ATCGAT 1 cut(s) 58
BsuRI GGCC 2 cut(s) 38, 266
BsuTUI ATCGAT 1 cut(s) 58
BtsCI GGATG 4 cut(s) 229, 334, 355, 502
Cac8I GCNNGC 1 cut(s) 224
CfoI GCGC 2 cut(s) 10, 242
ClaI ATCGAT 1 cut(s) 58
CviAII CATG 3 cut(s) 386, 482, 521
DdeI CTNAG 3 cut(s) 95, 200, 440
DpnI GATC 4 cut(s) 57, 61, 132, 161
DpnII GATC 4 cut(s) 55, 59, 130, 159
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
Eco24I GRGCYC 2 cut(s) 170, 411
Eco57I CTGAAG 1 cut(s) 176
EcoT22I ATGCAT 1 cut(s) 355
EcoT38I GRGCYC 2 cut(s) 170, 411
FaeI CATG 3 cut(s) 389, 485, 524
FaiI YATR 7 cut(s) 137, 344, 387, 413, 483, 518, 522
FaqI GGGAC 1 cut(s) 431
FatI CATG 3 cut(s) 385, 481, 520
Fnu4HI GCNGC 5 cut(s) 36, 152, 220, 301, 467
FokI GGATG 4 cut(s) 216, 341, 362, 509
FriOI GRGCYC 2 cut(s) 170, 411
Fsp4HI GCNGC 5 cut(s) 36, 152, 220, 301, 467
GlaI GCGC 2 cut(s) 9, 241
GluI GCNGC 5 cut(s) 36, 152, 220, 301, 467
HaeIII GGCC 2 cut(s) 38, 266
HapII CCGG 1 cut(s) 233
HhaI GCGC 2 cut(s) 10, 242
Hin1II CATG 3 cut(s) 389, 485, 524
Hin6I GCGC 2 cut(s) 8, 240
HinP1I GCGC 2 cut(s) 8, 240
HinfI GANTC 4 cut(s) 67, 73, 295, 436
HpaII CCGG 1 cut(s) 233
Hpy188I TCNGA 4 cut(s) 55, 72, 98, 114
Hpy188III TCNNGA 3 cut(s) 121, 163, 233
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 2 cut(s) 30, 180
HpyCH4III ACNGT 1 cut(s) 507
HpyCH4V TGCA 1 cut(s) 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 248
HpyF3I CTNAG 3 cut(s) 95, 200, 440
Hsp92II CATG 3 cut(s) 389, 485, 524
HspAI GCGC 2 cut(s) 8, 240
Kpn2I TCCGGA 1 cut(s) 232
Kzo9I GATC 4 cut(s) 55, 59, 130, 159
LmnI GCTCC 1 cut(s) 317
LpnPI CCDG 4 cut(s) 236, 246, 257, 427
Lsp1109I GCAGC 2 cut(s) 206, 453
LweI GCATC 3 cut(s) 319, 340, 362
MalI GATC 4 cut(s) 57, 61, 132, 161
MboI GATC 4 cut(s) 55, 59, 130, 159
MboII GAAGA 2 cut(s) 81, 169
MhlI GDGCHC 2 cut(s) 170, 411
MluCI AATT 3 cut(s) 124, 449, 474
MlyI GAGTC 2 cut(s) 76, 289
MmeI TCCRAC 1 cut(s) 327
Mph1103I ATGCAT 1 cut(s) 355
MroI TCCGGA 1 cut(s) 232
MslI CAYNNNNRTG 1 cut(s) 486
MspA1I CMGCKG 1 cut(s) 154
MspI CCGG 1 cut(s) 233
MvnI CGCG 4 cut(s) 10, 35, 242, 300
MwoI GCNNNNNNNGC 2 cut(s) 114, 248
NdeII GATC 4 cut(s) 55, 59, 130, 159
NlaIII CATG 3 cut(s) 389, 485, 524
NsiI ATGCAT 1 cut(s) 355
PfeI GAWTC 2 cut(s) 73, 436
PkrI GCNGC 5 cut(s) 37, 153, 221, 302, 468
Ple19I CGATCG 2 cut(s) 58, 62
PleI GAGTC 2 cut(s) 75, 289
PpsI GAGTC 2 cut(s) 75, 289
PvuI CGATCG 2 cut(s) 58, 62
RseI CAYNNNNRTG 1 cut(s) 486
SatI GCNGC 5 cut(s) 36, 152, 220, 301, 467
Sau3AI GATC 4 cut(s) 55, 59, 130, 159
SchI GAGTC 2 cut(s) 76, 289
SduI GDGCHC 2 cut(s) 170, 411
SetI ASST 7 cut(s) 89, 119, 189, 276, 322, 361, 446
SfaNI GCATC 3 cut(s) 319, 340, 362
SmiMI CAYNNNNRTG 1 cut(s) 486
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 3 cut(s) 124, 449, 474
SsiI CCGC 5 cut(s) 10, 35, 152, 242, 300
TaaI ACNGT 1 cut(s) 507
TaqI TCGA 3 cut(s) 58, 65, 183
TasI AATT 3 cut(s) 124, 449, 474
TauI GCSGC 3 cut(s) 38, 154, 303
TfiI GAWTC 2 cut(s) 73, 436
TseI GCWGC 2 cut(s) 219, 466
TspDTI ATGAA 3 cut(s) 218, 296, 374
TspGWI ACGGA 1 cut(s) 16
XapI RAATTY 2 cut(s) 124, 449
Zsp2I ATGCAT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.