pycom01g09480

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
10383611 .. 10386798
3188 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 432 bp
ATGGCTGCCCTAAGGAGCTTTCTCAAGAAAAAATCCTCTGTGCTTTGCAATGGAGGAGCCGTGAGACACAGGCTCTTCTCCGCTCAGGTGTCCCAACCCATCCCCGACTCTCCATCTTTTGCTCAGAGAATCGGAAATCTCCCCAAGGATCTTCCTGCCACCCAAATCAAAACCCAAGTTTCCCAACTCATTGGTAGAACTCCCATTGTTTATCTTAACAAAGTCACTGAGGGATGTGGAGCTTTCATTGCTGTCAAGCAAGAGATGTTCCAACCCACGGCTAGCATCAAGGACAGACCGGCACTTTCTATGATCAACGATGCAGAAGAGAAGGGTTTGATAACTCCTGGGGAGGTTAACAACACTGATCGAGCCAACGTCAGGGAATATGGGAATCAGCATGGCGTTTATGGCAGCCATGAGAGGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

144

Amino Acids

15.62

Weight (kDa)

9.59

Isoelectric Point (pI)

28.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 60 - 111 5e-11 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 83
AciI CCGC 1 cut(s) 81
AclWI GGATC 1 cut(s) 156
AfiI CCNNNNNNNGG 3 cut(s) 277, 381, 424
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 2 cut(s) 18, 242
AluI AGCT 2 cut(s) 18, 242
Alw26I GTCTC 1 cut(s) 58
AlwI GGATC 1 cut(s) 156
ApeKI GCWGC 2 cut(s) 5, 414
AsuNHI GCTAGC 1 cut(s) 281
AxyI CCTNAGG 1 cut(s) 11
BbvI GCAGC 1 cut(s) 426
BccI CCATC 2 cut(s) 107, 121
BceAI ACGGC 2 cut(s) 44, 294
BciT130I CCWGG 1 cut(s) 348
BclI TGATCA 1 cut(s) 312
BcoDI GTCTC 1 cut(s) 58
BfaI CTAG 1 cut(s) 282
BisI GCNGC 2 cut(s) 6, 415
BlsI GCNGC 2 cut(s) 7, 416
Bme1390I CCNGG 1 cut(s) 348
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 348
BmsI GCATC 2 cut(s) 294, 310
BmtI GCTAGC 1 cut(s) 285
Bpu10I CCTNAGC 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 8
BsaJI CCNNGG 3 cut(s) 144, 276, 347
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 3 cut(s) 277, 381, 424
Bse118I RCCGGY 1 cut(s) 298
Bse21I CCTNAGG 1 cut(s) 11
Bse3DI GCAATG 2 cut(s) 55, 246
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 3 cut(s) 144, 276, 347
BseGI GGATG 2 cut(s) 99, 239
BseLI CCNNNNNNNGG 3 cut(s) 277, 381, 424
BseMI GCAATG 2 cut(s) 55, 246
BseMII CTCAG 3 cut(s) 98, 137, 219
BseRI GAGGAG 1 cut(s) 69
BseXI GCAGC 1 cut(s) 426
BsiSI CCGG 1 cut(s) 299
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 3 cut(s) 277, 381, 424
BsmAI GTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 76
Bsp143I GATC 3 cut(s) 148, 312, 367
BspACI CCGC 1 cut(s) 81
BspCNI CTCAG 3 cut(s) 97, 136, 220
BspLI GGNNCC 1 cut(s) 58
BspOI GCTAGC 1 cut(s) 285
BspPI GGATC 1 cut(s) 156
BspQI GCTCTTC 1 cut(s) 80
BsrBI CCGCTC 1 cut(s) 83
BsrDI GCAATG 2 cut(s) 55, 246
BsrFI RCCGGY 1 cut(s) 298
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 3 cut(s) 144, 276, 347
BssMI GATC 3 cut(s) 148, 312, 367
BssT1I CCWWGG 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 348
Bst6I CTCTTC 2 cut(s) 80, 321
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 4 cut(s) 11, 84, 123, 228
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 2 cut(s) 99, 239
BstKTI GATC 3 cut(s) 151, 315, 370
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 3 cut(s) 148, 312, 367
BstMWI GCNNNNNNNGC 2 cut(s) 248, 411
BstNI CCWGG 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 346
BstV1I GCAGC 1 cut(s) 426
BstX2I RGATCY 1 cut(s) 148
BstXI CCANNNNNNTGG 1 cut(s) 191
BstYI RGATCY 1 cut(s) 148
Bsu36I CCTNAGG 1 cut(s) 11
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 2 cut(s) 99, 239
BtsIMutI CAGTG 2 cut(s) 225, 363
Cac8I GCNNGC 1 cut(s) 283
Cfr10I RCCGGY 1 cut(s) 298
CviAII CATG 2 cut(s) 401, 419
CviJI RGCY 8 cut(s) 5, 18, 59, 73, 242, 281, 374, 417
CviKI_1 RGCY 8 cut(s) 5, 18, 59, 73, 242, 281, 374, 417
DdeI CTNAG 4 cut(s) 11, 84, 123, 228
DpnI GATC 3 cut(s) 150, 314, 369
DpnII GATC 3 cut(s) 148, 312, 367
Eam1104I CTCTTC 2 cut(s) 80, 321
EarI CTCTTC 2 cut(s) 80, 321
Eco130I CCWWGG 1 cut(s) 144
Eco81I CCTNAGG 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 2 cut(s) 404, 422
FaiI YATR 6 cut(s) 311, 390, 402, 411, 420, 430
FaqI GGGAC 1 cut(s) 76
FatI CATG 2 cut(s) 400, 418
FbaI TGATCA 1 cut(s) 312
Fnu4HI GCNGC 2 cut(s) 6, 415
FokI GGATG 2 cut(s) 86, 246
Fsp4HI GCNGC 2 cut(s) 6, 415
FspBI CTAG 1 cut(s) 282
GluI GCNGC 2 cut(s) 6, 415
HapII CCGG 1 cut(s) 299
Hin1II CATG 2 cut(s) 404, 422
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 3 cut(s) 107, 129, 394
HpaI GTTAAC 1 cut(s) 358
HpaII CCGG 1 cut(s) 299
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 2 cut(s) 126, 134
Hpy188III TCNNGA 1 cut(s) 25
Hpy8I GTNNAC 1 cut(s) 358
HpyAV CCTTC 1 cut(s) 325
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 2 cut(s) 48, 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 411
HpyF3I CTNAG 4 cut(s) 11, 84, 123, 228
HpySE526I ACGT 1 cut(s) 378
Hsp92II CATG 2 cut(s) 404, 422
Ksp22I TGATCA 1 cut(s) 312
KspAI GTTAAC 1 cut(s) 358
Kzo9I GATC 3 cut(s) 148, 312, 367
LguI GCTCTTC 1 cut(s) 80
LmnI GCTCC 3 cut(s) 15, 56, 239
LpnPI CCDG 7 cut(s) 55, 71, 168, 312, 333, 360, 367
Lsp1109I GCAGC 1 cut(s) 426
LweI GCATC 2 cut(s) 294, 310
MaeI CTAG 1 cut(s) 282
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 1 cut(s) 223
MalI GATC 3 cut(s) 150, 314, 369
MbiI CCGCTC 1 cut(s) 83
MboI GATC 3 cut(s) 148, 312, 367
MboII GAAGA 3 cut(s) 67, 143, 338
MflI RGATCY 1 cut(s) 148
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 295
MnlI CCTC 5 cut(s) 46, 47, 223, 346, 417
MseI TTAA 2 cut(s) 216, 357
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 348
MwoI GCNNNNNNNGC 2 cut(s) 248, 411
NdeII GATC 3 cut(s) 148, 312, 367
NheI GCTAGC 1 cut(s) 281
NlaIII CATG 2 cut(s) 404, 422
NlaIV GGNNCC 1 cut(s) 58
NmuCI GTSAC 1 cut(s) 223
PciSI GCTCTTC 1 cut(s) 80
PfeI GAWTC 2 cut(s) 129, 394
PkrI GCNGC 2 cut(s) 7, 416
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 1 cut(s) 58
PsuI RGATCY 1 cut(s) 148
SapI GCTCTTC 1 cut(s) 80
SaqAI TTAA 2 cut(s) 216, 357
SatI GCNGC 2 cut(s) 6, 415
Sau3AI GATC 3 cut(s) 148, 312, 367
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 348
SetI ASST 5 cut(s) 20, 90, 244, 357, 381
SfaNI GCATC 2 cut(s) 294, 310
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
SsiI CCGC 1 cut(s) 81
SspMI CTAG 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 346
StyI CCWWGG 1 cut(s) 144
TaiI ACGT 1 cut(s) 381
TaqI TCGA 1 cut(s) 370
TfiI GAWTC 2 cut(s) 129, 394
Tru1I TTAA 2 cut(s) 216, 357
Tru9I TTAA 2 cut(s) 216, 357
TscAI CASTG 2 cut(s) 232, 370
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 2 cut(s) 5, 414
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 1 cut(s) 235
TspRI CASTG 2 cut(s) 232, 370
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.