Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10399267 .. 10400922

Gene Structure 1656 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGAATGATTTAAAGGAACTCTGGTCACTTTTAAATCTGCTTCTTCCGGAAGTATTTGATAATCGGAAAGCATTTCATGATTGGTTTTCAAAACCCTTTCAAAAGGAAGCCCCTACACCAAATGCAGAAGATGACTGGCTGGAAACTGAAAAAAAGGTTATCATCATTCACCGACTTCATCAAATTTTAGAGCCTTTTATGCTTAGGCGGCGTGTTGAAGACGTGGAAGGTGCACTCCCACCTAAGCGATCCATTGTTTTAAGGTGTAAAATGTCGGCTATTCAAAGTGCTGTATATGACTGGATCAAATCAACAGGCACTATTCGAGTAGATCCTGAAGAAGAGAAGCTAAGGGTTCAAAAAAATCCACAATACCAGCCCAAAGTGTACAAAACATTAAATAATAGATGTATGGAACTGCGAAAAACTTGCAATCATCCATTGCTCAACTACCCATTCTTTAATGATTTTTCCAAGGATTTCCTTGTAAGATCTTGTGGGAAATTATGGATCCTGGACAGGATCCTTGTTAAACTTCAGAGAACAGGGCATCGAGTACTTCTTTTCAGCACCATGACAAAACTCCTTGATATTTTGGAAGAATACTTGCAGTGGCGTCATCTTGTCTACAGAAGAATTGATGGAACAACCAGTTTAGAAGACCGTGAGTCAGCTATAGTGGATTTTAACAGACCTGGTTCAGACTGCTTTATCTTCTTACTTAGTATTCGTGCTGCCGGACGGGGTCTTAATCTCCAGTCTGCTGATACGGTTGTCATATATGATCCTGATCCAAACCCTAAAAATGAAGAGCAGGCTGTTGCTAGAGCCCATCGCATTGGACAGAAGAGAGAAGTCAAGGTCATCTATCTGGAAGCAGTTGTTGACAAAATGGCTAGCCATCTGAAAGAGGATGAACTACGAAGTGGAGGTACAGTTGATTCAGAGGATGACCTTGCTGGTAAGGATCGGTATATCGGATCAATTGAGAGCCTCATAAGAAGCAACATTCAACAATACAAGATTGACATGGCTGATGAGGTTATCAATGCTGGGCGTTTTGACCAGAGAACAACTCATGAAGAGAGACGTATGACTTTGGAAACCTTACTGCATGATGAAGAGAGGTACCAAGAAACTCTTCATGATGTTCCCTCTTTGCAGGAGGTTAATCGTATGATTGCTAGAAGTGAGGAAGAAATTGAATTGTTTGATCGATCCTATTCCTATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009653 GO:0009987 GO:0010199 GO:0010468 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0032502 GO:0040029 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048646 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060147 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065007 GO:0070920 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090691 GO:0097159 GO:1900034 GO:1900036 GO:1901363 GO:1903798

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Bromodomain Helicase_C QLQ SNF2_N

Protein Analysis

412

Amino Acids

48.28

Weight (kDa)

5.96

Isoelectric Point (pI)

55.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	2 - 147	1.8e-25	SNF2-related domain
Helicase_C	PF00271	168 - 281	1.2e-23	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1128
AccB1I	GGYRCC	1 cut(s)	1128
AccI	GTMKAC	1 cut(s)	627
AccIII	TCCGGA	1 cut(s)	46
AciI	CCGC	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	183
AcuI	CTGAAG	2 cut(s)	357, 521
AcyI	GRCGYC	1 cut(s)	616
AfaI	GTAC	4 cut(s)	389, 558, 934, 1130
AgsI	TTSAA	7 cut(s)	90, 101, 218, 284, 359, 1013, 1205
AhdI	GACNNNNNGTC	1 cut(s)	667
AjiI	CACGTC	1 cut(s)	223
AjnI	CCWGG	2 cut(s)	513, 694
AjuI	GAANNNNNNNTTGG	2 cut(s)	1125, 1157
AluBI	AGCT	2 cut(s)	349, 674
AluI	AGCT	2 cut(s)	349, 674
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	1 cut(s)	1081
Alw44I	GTGCAC	1 cut(s)	231
Aor13HI	TCCGGA	1 cut(s)	46
ApaLI	GTGCAC	1 cut(s)	231
ApeKI	GCWGC	1 cut(s)	734
ApoI	RAATTY	1 cut(s)	183
Asp700I	GAANNNNTTC	1 cut(s)	1140
Asp718I	GGTACC	1 cut(s)	1128
AsuHPI	GGTGA	1 cut(s)	161
AsuNHI	GCTAGC	1 cut(s)	896
BaeGI	GKGCMC	1 cut(s)	235
BaeI	ACNNNNGTAYC	2 cut(s)	759, 792
BamHI	GGATCC	2 cut(s)	510, 522
BanI	GGYRCC	1 cut(s)	1128
BanII	GRGCYC	1 cut(s)	832
BarI	GAAGNNNNNNTAC	2 cut(s)	916, 948
BbsI	GAAGAC	2 cut(s)	225, 666
Bbv12I	GWGCWC	1 cut(s)	235
BbvI	GCAGC	1 cut(s)	721
BccI	CCATC	3 cut(s)	635, 840, 909
BcgI	CGANNNNNNTGC	2 cut(s)	411, 445
BciT130I	CCWGG	2 cut(s)	515, 696
BcoDI	GTCTC	1 cut(s)	1081
BfaI	CTAG	3 cut(s)	825, 897, 1185
BfmI	CTRYAG	2 cut(s)	628, 675
BglII	AGATCT	1 cut(s)	491
BisI	GCNGC	2 cut(s)	209, 735
BlsI	GCNGC	2 cut(s)	210, 736
BmcAI	AGTACT	1 cut(s)	558
Bme1390I	CCNGG	2 cut(s)	515, 696
BmeRI	GACNNNNNGTC	1 cut(s)	667
BmgBI	CACGTC	1 cut(s)	223
BmiI	GGNNCC	3 cut(s)	512, 524, 1130
BmrFI	CCNGG	2 cut(s)	515, 696
BmsI	GCATC	1 cut(s)	559
BmtI	GCTAGC	1 cut(s)	900
BpiI	GAAGAC	2 cut(s)	225, 666
BplI	GAGNNNNNCTC	2 cut(s)	1060, 1092
BpmI	CTGGAG	1 cut(s)	740
Bpu10I	CCTNAGC	3 cut(s)	203, 243, 350
Bsa29I	ATCGAT	1 cut(s)	1216
BsaBI	GATNNNNATC	1 cut(s)	789
BsaHI	GRCGYC	1 cut(s)	616
BsaJI	CCNNGG	1 cut(s)	474
BsaWI	WCCGGW	1 cut(s)	46
BsaXI	ACNNNNNCTCC	2 cut(s)	921, 951
Bse1I	ACTGG	4 cut(s)	140, 305, 651, 757
Bse3DI	GCAATG	1 cut(s)	440
Bse8I	GATNNNNATC	1 cut(s)	789
BseAI	TCCGGA	1 cut(s)	46
BseBI	CCWGG	2 cut(s)	515, 696
BseCI	ATCGAT	1 cut(s)	1216
BseDI	CCNNGG	1 cut(s)	474
BseGI	GGATG	3 cut(s)	436, 919, 955
BseJI	GATNNNNATC	1 cut(s)	789
BseMI	GCAATG	1 cut(s)	440
BseNI	ACTGG	4 cut(s)	140, 305, 651, 757
BseSI	GKGCMC	1 cut(s)	235
BseXI	GCAGC	1 cut(s)	721
BseYI	CCCAGC	1 cut(s)	1052
BshNI	GGYRCC	1 cut(s)	1128
BshVI	ATCGAT	1 cut(s)	1216
BsiHKAI	GWGCWC	1 cut(s)	235
BsiSI	CCGG	2 cut(s)	47, 738
BsmAI	GTCTC	1 cut(s)	1081
BsmBI	CGTCTC	1 cut(s)	1081
Bsp1286I	GDGCHC	2 cut(s)	235, 832
Bsp13I	TCCGGA	1 cut(s)	46
Bsp1407I	TGTACA	1 cut(s)	387
BspACI	CCGC	1 cut(s)	208
BspDI	ATCGAT	1 cut(s)	1216
BspEI	TCCGGA	1 cut(s)	46
BspHI	TCATGA	3 cut(s)	76, 1078, 1144
BspLI	GGNNCC	3 cut(s)	512, 524, 1130
BspOI	GCTAGC	1 cut(s)	900
BspQI	GCTCTTC	1 cut(s)	804
BspT107I	GGYRCC	1 cut(s)	1128
BsrDI	GCAATG	1 cut(s)	440
BsrGI	TGTACA	1 cut(s)	387
BsrI	ACTGG	4 cut(s)	140, 305, 651, 757
BssECI	CCNNGG	1 cut(s)	474
BssNI	GRCGYC	1 cut(s)	616
BssT1I	CCWWGG	1 cut(s)	474
Bst2UI	CCWGG	2 cut(s)	515, 696
Bst4CI	ACNGT	3 cut(s)	665, 772, 937
Bst6I	CTCTTC	6 cut(s)	336, 804, 842, 1077, 1116, 1146
BstACI	GRCGYC	1 cut(s)	616
BstAUI	TGTACA	1 cut(s)	387
BstC8I	GCNNGC	2 cut(s)	816, 898
BstDEI	CTNAG	4 cut(s)	203, 243, 350, 722
BstF5I	GGATG	3 cut(s)	436, 919, 955
BstMAI	GTCTC	1 cut(s)	1081
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 208
BstNI	CCWGG	2 cut(s)	515, 696
BstSCI	CCNGG	2 cut(s)	513, 694
BstSFI	CTRYAG	2 cut(s)	628, 675
BstSLI	GKGCMC	1 cut(s)	235
BstV1I	GCAGC	1 cut(s)	721
BstV2I	GAAGAC	2 cut(s)	225, 666
BstX2I	RGATCY	4 cut(s)	331, 491, 510, 522
BstXI	CCANNNNNNTGG	1 cut(s)	839
BstYI	RGATCY	4 cut(s)	331, 491, 510, 522
Bsu15I	ATCGAT	1 cut(s)	1216
BsuTUI	ATCGAT	1 cut(s)	1216
BtgZI	GCGATG	1 cut(s)	818
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	3 cut(s)	436, 919, 955
BtsI	GCAGTG	1 cut(s)	617
BtsIMutI	CAGTG	1 cut(s)	617
Cac8I	GCNNGC	2 cut(s)	816, 898
CciI	TCATGA	3 cut(s)	76, 1078, 1144
ClaI	ATCGAT	1 cut(s)	1216
CseI	GACGC	1 cut(s)	605
CsiI	ACCWGGT	1 cut(s)	694
Csp6I	GTAC	4 cut(s)	388, 557, 933, 1129
CviAII	CATG	6 cut(s)	77, 574, 1030, 1079, 1115, 1145
CviQI	GTAC	4 cut(s)	388, 557, 933, 1129
DdeI	CTNAG	4 cut(s)	203, 243, 350, 722
DraI	TTTAAA	2 cut(s)	12, 33
DriI	GACNNNNNGTC	1 cut(s)	667
Eam1104I	CTCTTC	6 cut(s)	336, 804, 842, 1077, 1116, 1146
Eam1105I	GACNNNNNGTC	1 cut(s)	667
EarI	CTCTTC	6 cut(s)	336, 804, 842, 1077, 1116, 1146
Eco130I	CCWWGG	1 cut(s)	474
Eco24I	GRGCYC	1 cut(s)	832
Eco57I	CTGAAG	2 cut(s)	357, 521
EcoRII	CCWGG	2 cut(s)	513, 694
EcoT14I	CCWWGG	1 cut(s)	474
EcoT38I	GRGCYC	1 cut(s)	832
ErhI	CCWWGG	1 cut(s)	474
Esp3I	CGTCTC	1 cut(s)	1081
FaeI	CATG	6 cut(s)	80, 577, 1033, 1082, 1118, 1148
FalI	AAGNNNNNCTT	2 cut(s)	1125, 1157
FatI	CATG	6 cut(s)	76, 573, 1029, 1078, 1114, 1144
FblI	GTMKAC	1 cut(s)	627
Fnu4HI	GCNGC	2 cut(s)	209, 735
FokI	GGATG	3 cut(s)	423, 926, 962
FriOI	GRGCYC	1 cut(s)	832
Fsp4HI	GCNGC	2 cut(s)	209, 735
FspBI	CTAG	3 cut(s)	825, 897, 1185
GluI	GCNGC	2 cut(s)	209, 735
GsaI	CCCAGC	1 cut(s)	1056
GsuI	CTGGAG	1 cut(s)	740
HapII	CCGG	2 cut(s)	47, 738
HgaI	GACGC	1 cut(s)	605
Hin1I	GRCGYC	1 cut(s)	616
Hin1II	CATG	6 cut(s)	80, 577, 1033, 1082, 1118, 1148
HincII	GTYRAC	1 cut(s)	886
HindII	GTYRAC	1 cut(s)	886
HinfI	GANTC	2 cut(s)	668, 941
HpaII	CCGG	2 cut(s)	47, 738
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	4 cut(s)	233, 388, 628, 886
Hpy188I	TCNGA	6 cut(s)	66, 540, 703, 906, 946, 980
Hpy188III	TCNNGA	7 cut(s)	47, 77, 335, 788, 872, 1079, 1145
Hpy8I	GTNNAC	4 cut(s)	233, 388, 628, 886
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	3 cut(s)	665, 772, 937
HpyCH4IV	ACGT	2 cut(s)	222, 1090
HpyCH4V	TGCA	6 cut(s)	125, 233, 432, 610, 1114, 1162
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 208
HpyF3I	CTNAG	4 cut(s)	203, 243, 350, 722
HpySE526I	ACGT	2 cut(s)	222, 1090
Hsp92I	GRCGYC	1 cut(s)	616
Hsp92II	CATG	6 cut(s)	80, 577, 1033, 1082, 1118, 1148
Kpn2I	TCCGGA	1 cut(s)	46
KpnI	GGTACC	1 cut(s)	1132
LguI	GCTCTTC	1 cut(s)	804
Lsp1109I	GCAGC	1 cut(s)	721
LweI	GCATC	1 cut(s)	559
MabI	ACCWGGT	1 cut(s)	694
MaeI	CTAG	3 cut(s)	825, 897, 1185
MaeII	ACGT	2 cut(s)	222, 1090
MaeIII	GTNAC	1 cut(s)	24
MfeI	CAATTG	1 cut(s)	984
MflI	RGATCY	4 cut(s)	331, 491, 510, 522
MhlI	GDGCHC	2 cut(s)	235, 832
MluCI	AATT	6 cut(s)	183, 503, 636, 984, 1200, 1205
MlyI	GAGTC	1 cut(s)	677
MnlI	CCTC	9 cut(s)	904, 923, 940, 1004, 1033, 1119, 1159, 1165, 1186
MroI	TCCGGA	1 cut(s)	46
MroXI	GAANNNNTTC	1 cut(s)	1140
MseI	TTAA	9 cut(s)	11, 32, 260, 398, 462, 531, 687, 750, 1170
MspI	CCGG	2 cut(s)	47, 738
MspR9I	CCNGG	2 cut(s)	515, 696
MunI	CAATTG	1 cut(s)	984
MvaI	CCWGG	2 cut(s)	515, 696
MwoI	GCNNNNNNNGC	2 cut(s)	199, 208
NheI	GCTAGC	1 cut(s)	896
NlaIII	CATG	6 cut(s)	80, 577, 1033, 1082, 1118, 1148
NlaIV	GGNNCC	3 cut(s)	512, 524, 1130
NmuCI	GTSAC	1 cut(s)	24
PagI	TCATGA	3 cut(s)	76, 1078, 1144
PciSI	GCTCTTC	1 cut(s)	804
PdmI	GAANNNNTTC	1 cut(s)	1140
PfeI	GAWTC	1 cut(s)	941
PflFI	GACNNNGTC	1 cut(s)	744
PfoI	TCCNGGA	1 cut(s)	513
PkrI	GCNGC	2 cut(s)	210, 736
PleI	GAGTC	1 cut(s)	676
PpsI	GAGTC	1 cut(s)	676
Psp6I	CCWGG	2 cut(s)	513, 694
PspFI	CCCAGC	1 cut(s)	1052
PspGI	CCWGG	2 cut(s)	513, 694
PspN4I	GGNNCC	3 cut(s)	512, 524, 1130
PsuI	RGATCY	4 cut(s)	331, 491, 510, 522
PsyI	GACNNNGTC	1 cut(s)	744
RsaI	GTAC	4 cut(s)	389, 558, 934, 1130
RsaNI	GTAC	4 cut(s)	388, 557, 933, 1129
SapI	GCTCTTC	1 cut(s)	804
SaqAI	TTAA	9 cut(s)	11, 32, 260, 398, 462, 531, 687, 750, 1170
SatI	GCNGC	2 cut(s)	209, 735
ScaI	AGTACT	1 cut(s)	558
SchI	GAGTC	1 cut(s)	677
ScrFI	CCNGG	2 cut(s)	515, 696
SduI	GDGCHC	2 cut(s)	235, 832
SexAI	ACCWGGT	1 cut(s)	694
SfaNI	GCATC	1 cut(s)	559
SfcI	CTRYAG	2 cut(s)	628, 675
Sse9I	AATT	6 cut(s)	183, 503, 636, 984, 1200, 1205
SsiI	CCGC	1 cut(s)	208
SspMI	CTAG	3 cut(s)	825, 897, 1185
StyD4I	CCNGG	2 cut(s)	513, 694
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	3 cut(s)	665, 772, 937
TaiI	ACGT	2 cut(s)	225, 1093
TaqI	TCGA	3 cut(s)	325, 553, 1216
TasI	AATT	6 cut(s)	183, 503, 636, 984, 1200, 1205
TatI	WGTACW	2 cut(s)	387, 556
TauI	GCSGC	1 cut(s)	211
TfiI	GAWTC	1 cut(s)	941
Tru1I	TTAA	9 cut(s)	11, 32, 260, 398, 462, 531, 687, 750, 1170
Tru9I	TTAA	9 cut(s)	11, 32, 260, 398, 462, 531, 687, 750, 1170
TscAI	CASTG	1 cut(s)	617
TseFI	GTSAC	1 cut(s)	24
TseI	GCWGC	1 cut(s)	734
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	8 cut(s)	17, 65, 167, 822, 930, 1095, 1133, 1134
TspRI	CASTG	1 cut(s)	617
Tth111I	GACNNNGTC	1 cut(s)	744
VneI	GTGCAC	1 cut(s)	231
XapI	RAATTY	1 cut(s)	183
XmiI	GTMKAC	1 cut(s)	627
XmnI	GAANNNNTTC	1 cut(s)	1140
XspI	CTAG	3 cut(s)	825, 897, 1185
ZrmI	AGTACT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.