Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10401088 .. 10403167

Gene Structure 2080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGGCTCTGATGCATCTCCGAAAACTGAAAGAAAGAGGGGGCGGCCCAAGAAAATTCATCCTAGCTACAAGGAGTTAGATGATGACGATGGCGAATACTTTGAAGCAAGTTCTGATGAGAGAGACGGGTATTCTTTGCATGAAGAAGAGGGAGAAGTTGAAGAGTTAGAGGATGATGACTATAGTGGTGCTGTTGAGGCAACACCAATTATTAAGGAACAAGTGGAAGAGGATGTCCCTGAATGTGATGGTGAATATGAATATCCCCAGGATTCAGAAAGAGTTAGAAATAACCAGATGCTAGAAGAAGCTGGTTCCTCAGGATCATCCTCAGACAGTCGGAGAGTGATGCAGACAGTGTCTCCTGTTTCTTCTCAGAAATTTGGTTCCCTCTCTGCCTTAGAAGGTAGGCCAGGATCTGCTTCAAAGAGGATGCAAGATGATGTAGAGGAAGGTGAGATTGTTGTATCTGGCGATTCTCACATGGACCAATTGGACCACCAACAATCTGGAAGTTCGAATCATGACCGTGATGAAGGTGAAGACGAACAGGTTTTGCAACCCAAGATCAAGAGGAAGCGTAGTCTTAGGGTTCGCCCTCGTCATACCATAGAGAGGCCAGAGGAAAAGTCTGGTAGTGAGACACCATCTCTTCAACGTGGAGATTCATCTCTGTTGCCATATCATGTGGACCATAAATCTCAAGCACAGTCAAGGGCTGATTCTGAAATCAAAATATACGGAGAGCCCCATGCTGTAAAGCACGACCAAAGTGATTCATCCTCAAAAACTAAGCGAATTTTGCCTAGGAGAGGCTCTAACATGTCCAAAGTGCATGTTAAATCTGGCAGATCAAATGGCATGCCTGATCCTGTGGAAGATGCTGCTGAACCCCACAGAGAAAATTGGGAGGGAAAAGTTGGGAATATAAGTGGAACTTTAGTTTATGGCACAAAAATGTCTGAGATCGTCCAGAGAAAGTGCAAGAATGTAATTAGTAAGTTCCAAAGGAGAATAGACAAGGAAGGTCCGCAGATAGTACCTTTACTGACAGATTTGTGGAAGCGCTTTGAAAATTCTAGTTACGCAAGTGGATCGGGAAATAATCTCTTGGATTTACGAAAGATCGATCAGCGGATAGAGAGGTTGGAGTATAATGGAGTAATGGAGCTTGTGTCTGATGTGCAGTCTATGTTGAAAAATGGAATGCAATTTTATGGGTTTAACTATGAGGTAAGTAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009653 GO:0009987 GO:0010199 GO:0010468 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0032502 GO:0040029 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048646 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060147 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065007 GO:0070920 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090691 GO:0097159 GO:1900034 GO:1900036 GO:1901363 GO:1903798

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Bromodomain Helicase_C QLQ SNF2_N

Protein Analysis

416

Amino Acids

46.81

Weight (kDa)

5.18

Isoelectric Point (pI)

62.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	43, 1031, 1135
AclWI	GGATC	4 cut(s)	331, 424, 863, 1102
AcsI	RAATTY	4 cut(s)	54, 380, 798, 1075
AfaI	GTAC	1 cut(s)	1041
AfeI	AGCGCT	1 cut(s)	1067
AfiI	CCNNNNNNNGG	2 cut(s)	615, 812
AflIII	ACRYGT	1 cut(s)	822
AgsI	TTSAA	6 cut(s)	104, 161, 426, 656, 1073, 1198
AjnI	CCWGG	2 cut(s)	267, 412
AluBI	AGCT	3 cut(s)	66, 311, 1171
AluI	AGCT	3 cut(s)	66, 311, 1171
Alw26I	GTCTC	3 cut(s)	117, 366, 635
AlwI	GGATC	4 cut(s)	331, 424, 863, 1102
AlwNI	CAGNNNCTG	1 cut(s)	419
Aor51HI	AGCGCT	1 cut(s)	1067
AoxI	GGCC	3 cut(s)	44, 410, 617
ApeKI	GCWGC	1 cut(s)	884
ApoI	RAATTY	4 cut(s)	54, 380, 798, 1075
AspA2I	CCTAGG	1 cut(s)	806
AspLEI	GCGC	1 cut(s)	1068
AspS9I	GGNCC	5 cut(s)	45, 487, 496, 691, 1028
AsuHPI	GGTGA	3 cut(s)	263, 467, 551
AsuII	TTCGAA	1 cut(s)	518
AvaII	GGWCC	4 cut(s)	487, 496, 691, 1028
AvrII	CCTAGG	1 cut(s)	806
AxyI	CCTNAGG	1 cut(s)	319
BanII	GRGCYC	2 cut(s)	8, 750
BbsI	GAAGAC	1 cut(s)	549
BbvI	GCAGC	1 cut(s)	871
BccI	CCATC	3 cut(s)	83, 242, 655
BcgI	CGANNNNNNTGC	2 cut(s)	1077, 1111
BciT130I	CCWGG	2 cut(s)	269, 414
BcoDI	GTCTC	3 cut(s)	117, 366, 635
BfaI	CTAG	4 cut(s)	63, 302, 807, 1080
BfmI	CTRYAG	1 cut(s)	181
BfoI	RGCGCY	1 cut(s)	1069
BisI	GCNGC	2 cut(s)	44, 885
BlnI	CCTAGG	1 cut(s)	806
BlsI	GCNGC	2 cut(s)	45, 886
Bme1390I	CCNGG	2 cut(s)	269, 414
Bme18I	GGWCC	4 cut(s)	487, 496, 691, 1028
BmgT120I	GGNCC	5 cut(s)	45, 487, 496, 691, 1028
BmiI	GGNNCC	2 cut(s)	316, 388
BmrFI	CCNGG	2 cut(s)	269, 414
BmsI	GCATC	5 cut(s)	23, 288, 339, 423, 871
BpiI	GAAGAC	1 cut(s)	549
Bpu14I	TTCGAA	1 cut(s)	518
BpuEI	CTTGAG	1 cut(s)	687
Bsa29I	ATCGAT	1 cut(s)	1128
BsaJI	CCNNGG	2 cut(s)	267, 806
BsaXI	ACNNNNNCTCC	4 cut(s)	346, 376, 1160, 1190
Bsc4I	CCNNNNNNNGG	2 cut(s)	615, 812
Bse21I	CCTNAGG	1 cut(s)	319
BseBI	CCWGG	2 cut(s)	269, 414
BseCI	ATCGAT	1 cut(s)	1128
BseDI	CCNNGG	2 cut(s)	267, 806
BseGI	GGATG	6 cut(s)	58, 178, 238, 326, 438, 779
BseLI	CCNNNNNNNGG	2 cut(s)	615, 812
BseMII	CTCAG	4 cut(s)	333, 345, 389, 954
BseXI	GCAGC	1 cut(s)	871
BsgI	GTGCAG	1 cut(s)	1205
BshFI	GGCC	3 cut(s)	46, 412, 619
BshVI	ATCGAT	1 cut(s)	1128
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	2 cut(s)	615, 812
BsmAI	GTCTC	3 cut(s)	117, 366, 635
BsmBI	CGTCTC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	221
BsmI	GAATGC	1 cut(s)	1212
BsnI	GGCC	3 cut(s)	46, 412, 619
Bsp119I	TTCGAA	1 cut(s)	518
Bsp1286I	GDGCHC	2 cut(s)	8, 750
Bsp143I	GATC	9 cut(s)	323, 416, 567, 851, 868, 966, 1094, 1125, 1129
BspACI	CCGC	3 cut(s)	43, 1031, 1135
BspANI	GGCC	3 cut(s)	46, 412, 619
BspCNI	CTCAG	4 cut(s)	332, 344, 388, 955
BspDI	ATCGAT	1 cut(s)	1128
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	2 cut(s)	316, 388
BspPI	GGATC	4 cut(s)	331, 424, 863, 1102
BspT104I	TTCGAA	1 cut(s)	518
BssECI	CCNNGG	2 cut(s)	267, 806
BssMI	GATC	9 cut(s)	323, 416, 567, 851, 868, 966, 1094, 1125, 1129
BssT1I	CCWWGG	1 cut(s)	806
Bst2UI	CCWGG	2 cut(s)	269, 414
Bst4CI	ACNGT	4 cut(s)	338, 358, 530, 711
Bst6I	CTCTTC	4 cut(s)	141, 156, 222, 657
BstBI	TTCGAA	1 cut(s)	518
BstC8I	GCNNGC	1 cut(s)	863
BstDEI	CTNAG	7 cut(s)	319, 331, 375, 400, 587, 792, 963
BstENI	CCTNNNNNAGG	1 cut(s)	810
BstF5I	GGATG	6 cut(s)	58, 178, 238, 326, 438, 779
BstH2I	RGCGCY	1 cut(s)	1069
BstHHI	GCGC	1 cut(s)	1068
BstKTI	GATC	9 cut(s)	326, 419, 570, 854, 871, 969, 1097, 1128, 1132
BstMAI	GTCTC	3 cut(s)	117, 366, 635
BstMBI	GATC	9 cut(s)	323, 416, 567, 851, 868, 966, 1094, 1125, 1129
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 802
BstNI	CCWGG	2 cut(s)	269, 414
BstNSI	RCATGY	3 cut(s)	826, 839, 865
BstSCI	CCNGG	2 cut(s)	267, 412
BstSFI	CTRYAG	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	871
BstV2I	GAAGAC	1 cut(s)	549
BstX2I	RGATCY	1 cut(s)	416
BstXI	CCANNNNNNTGG	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	416
Bsu15I	ATCGAT	1 cut(s)	1128
Bsu36I	CCTNAGG	1 cut(s)	319
BsuRI	GGCC	3 cut(s)	46, 412, 619
BsuTUI	ATCGAT	1 cut(s)	1128
BtsCI	GGATG	6 cut(s)	58, 178, 238, 326, 438, 779
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	1 cut(s)	863
CaiI	CAGNNNCTG	1 cut(s)	419
CciI	TCATGA	1 cut(s)	523
CfoI	GCGC	1 cut(s)	1068
Cfr13I	GGNCC	5 cut(s)	45, 487, 496, 691, 1028
ClaI	ATCGAT	1 cut(s)	1128
Csp6I	GTAC	1 cut(s)	1040
CviAII	CATG	8 cut(s)	140, 484, 524, 686, 752, 823, 836, 862
CviQI	GTAC	1 cut(s)	1040
DdeI	CTNAG	7 cut(s)	319, 331, 375, 400, 587, 792, 963
DpnI	GATC	9 cut(s)	325, 418, 569, 853, 870, 968, 1096, 1127, 1131
DpnII	GATC	9 cut(s)	323, 416, 567, 851, 868, 966, 1094, 1125, 1129
Eam1104I	CTCTTC	4 cut(s)	141, 156, 222, 657
EarI	CTCTTC	4 cut(s)	141, 156, 222, 657
Eco130I	CCWWGG	1 cut(s)	806
Eco24I	GRGCYC	2 cut(s)	8, 750
Eco47I	GGWCC	4 cut(s)	487, 496, 691, 1028
Eco47III	AGCGCT	1 cut(s)	1067
Eco81I	CCTNAGG	1 cut(s)	319
EcoNI	CCTNNNNNAGG	1 cut(s)	810
EcoRII	CCWGG	2 cut(s)	267, 412
EcoT14I	CCWWGG	1 cut(s)	806
EcoT22I	ATGCAT	1 cut(s)	16
EcoT38I	GRGCYC	2 cut(s)	8, 750
ErhI	CCWWGG	1 cut(s)	806
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	8 cut(s)	143, 487, 527, 689, 755, 826, 839, 865
FalI	AAGNNNNNCTT	2 cut(s)	922, 954
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	8 cut(s)	139, 483, 523, 685, 751, 822, 835, 861
Fnu4HI	GCNGC	2 cut(s)	44, 885
FokI	GGATG	6 cut(s)	45, 185, 245, 313, 445, 766
FriOI	GRGCYC	2 cut(s)	8, 750
Fsp4HI	GCNGC	2 cut(s)	44, 885
FspBI	CTAG	4 cut(s)	63, 302, 807, 1080
GlaI	GCGC	1 cut(s)	1067
GluI	GCNGC	2 cut(s)	44, 885
HaeII	RGCGCY	1 cut(s)	1069
HaeIII	GGCC	3 cut(s)	46, 412, 619
HhaI	GCGC	1 cut(s)	1068
Hin1II	CATG	8 cut(s)	143, 487, 527, 689, 755, 826, 839, 865
Hin6I	GCGC	1 cut(s)	1066
HinP1I	GCGC	1 cut(s)	1066
HinfI	GANTC	6 cut(s)	272, 476, 520, 665, 722, 776
HphI	GGTGA	3 cut(s)	263, 467, 551
Hpy166II	GTNNAC	1 cut(s)	691
Hpy188III	TCNNGA	6 cut(s)	321, 510, 524, 571, 973, 1098
Hpy8I	GTNNAC	1 cut(s)	691
HpyAV	CCTTC	4 cut(s)	398, 446, 530, 1019
HpyCH4III	ACNGT	4 cut(s)	338, 358, 530, 711
HpyCH4IV	ACGT	1 cut(s)	658
HpyCH4V	TGCA	9 cut(s)	14, 139, 352, 436, 559, 835, 984, 1186, 1210
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 802
HpyF3I	CTNAG	7 cut(s)	319, 331, 375, 400, 587, 792, 963
HpySE526I	ACGT	1 cut(s)	658
Hsp92II	CATG	8 cut(s)	143, 487, 527, 689, 755, 826, 839, 865
HspAI	GCGC	1 cut(s)	1066
Kzo9I	GATC	9 cut(s)	323, 416, 567, 851, 868, 966, 1094, 1125, 1129
LmnI	GCTCC	1 cut(s)	1168
Lsp1109I	GCAGC	1 cut(s)	871
LweI	GCATC	5 cut(s)	23, 288, 339, 423, 871
MaeI	CTAG	4 cut(s)	63, 302, 807, 1080
MaeII	ACGT	1 cut(s)	658
MaeIII	GTNAC	1 cut(s)	1082
MalI	GATC	9 cut(s)	325, 418, 569, 853, 870, 968, 1096, 1127, 1131
MboI	GATC	9 cut(s)	323, 416, 567, 851, 868, 966, 1094, 1125, 1129
MboII	GAAGA	9 cut(s)	155, 158, 173, 239, 317, 363, 554, 644, 890
MfeI	CAATTG	1 cut(s)	491
MflI	RGATCY	1 cut(s)	416
MhlI	GDGCHC	2 cut(s)	8, 750
MluCI	AATT	9 cut(s)	54, 207, 380, 491, 798, 904, 993, 1075, 1211
MmeI	TCCRAC	2 cut(s)	320, 1128
Mph1103I	ATGCAT	1 cut(s)	16
MseI	TTAA	3 cut(s)	213, 840, 1224
MslI	CAYNNNNRTG	2 cut(s)	528, 956
MspA1I	CMGCKG	1 cut(s)	1135
MspR9I	CCNGG	2 cut(s)	269, 414
MunI	CAATTG	1 cut(s)	491
Mva1269I	GAATGC	1 cut(s)	1212
MvaI	CCWGG	2 cut(s)	269, 414
MwoI	GCNNNNNNNGC	2 cut(s)	197, 802
NdeII	GATC	9 cut(s)	323, 416, 567, 851, 868, 966, 1094, 1125, 1129
NlaIII	CATG	8 cut(s)	143, 487, 527, 689, 755, 826, 839, 865
NlaIV	GGNNCC	2 cut(s)	316, 388
NsiI	ATGCAT	1 cut(s)	16
NspI	RCATGY	3 cut(s)	826, 839, 865
NspV	TTCGAA	1 cut(s)	518
PaeI	GCATGC	1 cut(s)	865
PagI	TCATGA	1 cut(s)	523
PciI	ACATGT	1 cut(s)	822
PctI	GAATGC	1 cut(s)	1212
PfeI	GAWTC	6 cut(s)	272, 476, 520, 665, 722, 776
PflFI	GACNNNGTC	1 cut(s)	358
PkrI	GCNGC	2 cut(s)	45, 886
PscI	ACATGT	1 cut(s)	822
Psp6I	CCWGG	2 cut(s)	267, 412
PspGI	CCWGG	2 cut(s)	267, 412
PspN4I	GGNNCC	2 cut(s)	316, 388
PspPI	GGNCC	5 cut(s)	45, 487, 496, 691, 1028
PstNI	CAGNNNCTG	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	416
PsyI	GACNNNGTC	1 cut(s)	358
RsaI	GTAC	1 cut(s)	1041
RsaNI	GTAC	1 cut(s)	1040
RseI	CAYNNNNRTG	2 cut(s)	528, 956
SaqAI	TTAA	3 cut(s)	213, 840, 1224
SatI	GCNGC	2 cut(s)	44, 885
Sau3AI	GATC	9 cut(s)	323, 416, 567, 851, 868, 966, 1094, 1125, 1129
Sau96I	GGNCC	5 cut(s)	45, 487, 496, 691, 1028
ScrFI	CCNGG	2 cut(s)	269, 414
SduI	GDGCHC	2 cut(s)	8, 750
SfaNI	GCATC	5 cut(s)	23, 288, 339, 423, 871
SfcI	CTRYAG	1 cut(s)	181
SfuI	TTCGAA	1 cut(s)	518
SinI	GGWCC	4 cut(s)	487, 496, 691, 1028
SmiMI	CAYNNNNRTG	2 cut(s)	528, 956
SmlI	CTYRAG	1 cut(s)	702
SmoI	CTYRAG	1 cut(s)	702
SphI	GCATGC	1 cut(s)	865
Sse9I	AATT	9 cut(s)	54, 207, 380, 491, 798, 904, 993, 1075, 1211
SsiI	CCGC	3 cut(s)	43, 1031, 1135
SspMI	CTAG	4 cut(s)	63, 302, 807, 1080
StyD4I	CCNGG	2 cut(s)	267, 412
StyI	CCWWGG	1 cut(s)	806
TaaI	ACNGT	4 cut(s)	338, 358, 530, 711
TaiI	ACGT	1 cut(s)	661
TaqI	TCGA	2 cut(s)	518, 1128
TasI	AATT	9 cut(s)	54, 207, 380, 491, 798, 904, 993, 1075, 1211
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	6 cut(s)	272, 476, 520, 665, 722, 776
Tru1I	TTAA	3 cut(s)	213, 840, 1224
Tru9I	TTAA	3 cut(s)	213, 840, 1224
TscAI	CASTG	1 cut(s)	363
TseI	GCWGC	1 cut(s)	884
TspDTI	ATGAA	6 cut(s)	47, 156, 273, 549, 657, 768
TspGWI	ACGGA	1 cut(s)	756
TspRI	CASTG	1 cut(s)	363
Tth111I	GACNNNGTC	1 cut(s)	358
VpaK11BI	GGWCC	4 cut(s)	487, 496, 691, 1028
XagI	CCTNNNNNAGG	1 cut(s)	810
XapI	RAATTY	4 cut(s)	54, 380, 798, 1075
XceI	RCATGY	3 cut(s)	826, 839, 865
XcmI	CCANNNNNNNNNTGG	1 cut(s)	506
XmaJI	CCTAGG	1 cut(s)	806
XspI	CTAG	4 cut(s)	63, 302, 807, 1080
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.