pycom01g09590

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Reverse (-)
10436649 .. 10437227
579 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 363 bp
ATGGGAGGTTGTTGCTGTTCTTCCAGAAAAGCTCGTGTGCAACTGCATGGAGCACCTGTATATATCTATTGTCCTCCGGTTTTGGGAGAGCAAGAGTTGTTAAGATCGATCATGATGTCACAGCCTCCGCAATCAGTGCAGGACTTCTGGTTCGTTGGGATTTGGAATCATCAATACCTGACACTTACAGCCCCCCTCCTCCACCTTTGCCATATGATATGGTCTTTCGATCGACAGATTCTGATTCTGGCAGGGAAACAATTAGTTGCAGTAGTTTTGATACTTCCGCTACTTGTGGAGATCTTGGGGAATCAGACTGCAAAGTTCAAGAAAGTTCTTTGGATATCTCACCGAAGAAGTTAG

Protein Analysis

121

Amino Acids

13.7

Weight (kDa)

9.36

Isoelectric Point (pI)

65.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 128, 287
AfiI CCNNNNNNNGG 1 cut(s) 83
AgsI TTSAA 1 cut(s) 328
AloI GAACNNNNNNTCC 2 cut(s) 134, 166
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
Alw21I GWGCWC 1 cut(s) 55
AlwNI CAGNNNCTG 1 cut(s) 241
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
AsuHPI GGTGA 1 cut(s) 341
BauI CACGAG 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 55
BglII AGATCT 1 cut(s) 300
Bsa29I ATCGAT 1 cut(s) 107
BsaWI WCCGGW 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bsc4I CCNNNNNNNGG 1 cut(s) 83
BseCI ATCGAT 1 cut(s) 107
BseLI CCNNNNNNNGG 1 cut(s) 83
BseRI GAGGAG 1 cut(s) 188
BsgI GTGCAG 1 cut(s) 158
Bsh1285I CGRYCG 1 cut(s) 232
BshVI ATCGAT 1 cut(s) 107
BsiEI CGRYCG 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 55
BsiSI CCGG 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 4 cut(s) 104, 108, 229, 300
BspACI CCGC 2 cut(s) 128, 287
BspDI ATCGAT 1 cut(s) 107
BspHI TCATGA 1 cut(s) 111
BssMI GATC 4 cut(s) 104, 108, 229, 300
BssSI CACGAG 1 cut(s) 33
Bst2BI CACGAG 1 cut(s) 33
BstAPI GCANNNNNTGC 1 cut(s) 136
BstKTI GATC 4 cut(s) 107, 111, 232, 303
BstMBI GATC 4 cut(s) 104, 108, 229, 300
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstX2I RGATCY 1 cut(s) 300
BstYI RGATCY 1 cut(s) 300
Bsu15I ATCGAT 1 cut(s) 107
BsuTUI ATCGAT 1 cut(s) 107
BtsIMutI CAGTG 1 cut(s) 141
CaiI CAGNNNCTG 1 cut(s) 241
CciI TCATGA 1 cut(s) 111
ClaI ATCGAT 1 cut(s) 107
CviAII CATG 2 cut(s) 47, 112
CviJI RGCY 3 cut(s) 32, 124, 191
CviKI_1 RGCY 3 cut(s) 32, 124, 191
DpnI GATC 4 cut(s) 106, 110, 231, 302
DpnII GATC 4 cut(s) 104, 108, 229, 300
Eco32I GATATC 1 cut(s) 345
EcoRV GATATC 1 cut(s) 345
FaeI CATG 2 cut(s) 50, 115
FaiI YATR 7 cut(s) 48, 61, 63, 113, 213, 215, 220
FatI CATG 2 cut(s) 46, 111
FauNDI CATATG 1 cut(s) 213
HapII CCGG 1 cut(s) 77
Hin1II CATG 2 cut(s) 50, 115
HinfI GANTC 4 cut(s) 166, 238, 244, 310
HpaII CCGG 1 cut(s) 77
HphI GGTGA 1 cut(s) 341
Hpy188I TCNGA 2 cut(s) 243, 315
Hpy188III TCNNGA 3 cut(s) 24, 112, 328
HpyCH4V TGCA 5 cut(s) 40, 46, 139, 269, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
Hsp92II CATG 2 cut(s) 50, 115
Kzo9I GATC 4 cut(s) 104, 108, 229, 300
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 8 cut(s) 37, 69, 90, 125, 133, 191, 233, 237
MaeIII GTNAC 1 cut(s) 117
MalI GATC 4 cut(s) 106, 110, 231, 302
MboI GATC 4 cut(s) 104, 108, 229, 300
MboII GAAGA 1 cut(s) 12
MflI RGATCY 1 cut(s) 300
MhlI GDGCHC 1 cut(s) 55
MluCI AATT 1 cut(s) 260
MnlI CCTC 4 cut(s) 84, 135, 206, 209
MseI TTAA 1 cut(s) 101
MspI CCGG 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 136
NdeI CATATG 1 cut(s) 213
NdeII GATC 4 cut(s) 104, 108, 229, 300
NlaIII CATG 2 cut(s) 50, 115
NmuCI GTSAC 1 cut(s) 117
PagI TCATGA 1 cut(s) 111
PfeI GAWTC 4 cut(s) 166, 238, 244, 310
Ple19I CGATCG 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 241
PsuI RGATCY 1 cut(s) 300
PvuI CGATCG 1 cut(s) 232
SaqAI TTAA 1 cut(s) 101
Sau3AI GATC 4 cut(s) 104, 108, 229, 300
SduI GDGCHC 1 cut(s) 55
SetI ASST 5 cut(s) 10, 34, 58, 180, 207
Sse9I AATT 1 cut(s) 260
SsiI CCGC 2 cut(s) 128, 287
TaqI TCGA 3 cut(s) 107, 228, 232
TasI AATT 1 cut(s) 260
TfiI GAWTC 4 cut(s) 166, 238, 244, 310
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TscAI CASTG 1 cut(s) 141
TseFI GTSAC 1 cut(s) 117
Tsp45I GTSAC 1 cut(s) 117
TspRI CASTG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.