Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

10705073 .. 10707127

Gene Structure 2055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g09920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCTGTCTCTGAATCCAAACCCAGCTCAAGGTTTCTACTTATTCGATCCCATGATTACCAATATGGGCCTTCCGGGTCTCAATACTATGCCGCCGCCGACAACTGGTGGTGCTTCAGCTACGGCGGCGACCAGTACGACTGCTGCCTGCACGTCTTCGTCCGCGCCCGCAAACGCCGCGTCGATGTCGGCGGATGATCGAGCAAGAAAATCCGGAAGCCGTATACGATTACCAAGTCGAGAGAGAGCTGGACGGAGCAGGAGCACGACAAGTTTCTCGAAGCTCTTCAGCTGTTTGATCGTGACTGGAAGAAGATTGAAGCATTTATTGGCTCAAAAACGGTTATTCAGATACGAAGTCATGCACAGAAGTACTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

127

Amino Acids

13.56

Weight (kDa)

11.51

Isoelectric Point (pI)

64.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	223
AccII	CGCG	2 cut(s)	164, 179
AccIII	TCCGGA	1 cut(s)	212
AciI	CCGC	7 cut(s)	92, 95, 125, 162, 168, 177, 191
AclWI	GGATC	1 cut(s)	41
AcuI	CTGAAG	2 cut(s)	99, 271
AfaI	GTAC	2 cut(s)	136, 373
AfiI	CCNNNNNNNGG	2 cut(s)	29, 104
AgsI	TTSAA	1 cut(s)	319
AjiI	CACGTC	1 cut(s)	153
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
AluBI	AGCT	5 cut(s)	26, 119, 248, 283, 291
AluI	AGCT	5 cut(s)	26, 119, 248, 283, 291
Alw21I	GWGCWC	1 cut(s)	266
Alw26I	GTCTC	2 cut(s)	12, 83
AlwI	GGATC	1 cut(s)	41
Aor13HI	TCCGGA	1 cut(s)	212
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	143
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
Asp700I	GAANNNNTTC	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	1 cut(s)	67
AsuC2I	CCSGG	1 cut(s)	75
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	130
BceAI	ACGGC	2 cut(s)	138, 204
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	2 cut(s)	12, 83
BisI	GCNGC	5 cut(s)	92, 95, 126, 144, 177
BlsI	GCNGC	5 cut(s)	93, 96, 127, 145, 178
BmcAI	AGTACT	1 cut(s)	373
Bme1390I	CCNGG	1 cut(s)	75
BmgBI	CACGTC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	12
BpuMI	CCSGG	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	83
BsaWI	WCCGGW	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 104
Bse1I	ACTGG	3 cut(s)	109, 132, 310
BseAI	TCCGGA	1 cut(s)	212
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	2 cut(s)	29, 104
BseNI	ACTGG	3 cut(s)	109, 132, 310
BseXI	GCAGC	1 cut(s)	130
BseYI	CCCAGC	1 cut(s)	22
BsgI	GTGCAG	1 cut(s)	133
Bsh1236I	CGCG	2 cut(s)	164, 179
BshFI	GGCC	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	74, 213
BslI	CCNNNNNNNGG	2 cut(s)	29, 104
BsmAI	GTCTC	2 cut(s)	12, 83
BsnI	GGCC	1 cut(s)	69
Bso31I	GGTCTC	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp13I	TCCGGA	1 cut(s)	212
Bsp143I	GATC	3 cut(s)	46, 196, 297
BspACI	CCGC	7 cut(s)	92, 95, 125, 162, 168, 177, 191
BspANI	GGCC	1 cut(s)	69
BspEI	TCCGGA	1 cut(s)	212
BspFNI	CGCG	2 cut(s)	164, 179
BspPI	GGATC	1 cut(s)	41
BspQI	GCTCTTC	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	83
BsrI	ACTGG	3 cut(s)	109, 132, 310
BssMI	GATC	3 cut(s)	46, 196, 297
BssNAI	GTATAC	1 cut(s)	224
Bst1107I	GTATAC	1 cut(s)	224
Bst4CI	ACNGT	1 cut(s)	342
Bst6I	CTCTTC	1 cut(s)	290
BstC8I	GCNNGC	2 cut(s)	148, 168
BstF5I	GGATG	1 cut(s)	199
BstFNI	CGCG	2 cut(s)	164, 179
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	3 cut(s)	49, 199, 300
BstMAI	GTCTC	2 cut(s)	12, 83
BstMBI	GATC	3 cut(s)	46, 196, 297
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 176
BstSCI	CCNGG	1 cut(s)	73
BstUI	CGCG	2 cut(s)	164, 179
BstV1I	GCAGC	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	147
BstZ17I	GTATAC	1 cut(s)	224
BsuRI	GGCC	1 cut(s)	69
BtrI	CACGTC	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	199
Cac8I	GCNNGC	2 cut(s)	148, 168
CfoI	GCGC	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	168
Csp6I	GTAC	2 cut(s)	135, 372
CviAII	CATG	2 cut(s)	52, 361
CviJI	RGCY	8 cut(s)	26, 69, 119, 219, 248, 283, 291, 332
CviKI_1	RGCY	8 cut(s)	26, 69, 119, 219, 248, 283, 291, 332
CviQI	GTAC	2 cut(s)	135, 372
DpnI	GATC	3 cut(s)	48, 198, 299
DpnII	GATC	3 cut(s)	46, 196, 297
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
EciI	GGCGGA	1 cut(s)	206
Eco31I	GGTCTC	1 cut(s)	83
Eco57I	CTGAAG	2 cut(s)	99, 271
FaeI	CATG	2 cut(s)	55, 364
FaiI	YATR	5 cut(s)	53, 65, 89, 224, 362
FatI	CATG	2 cut(s)	51, 360
FauI	CCCGC	1 cut(s)	175
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	5 cut(s)	92, 95, 126, 144, 177
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	5 cut(s)	92, 95, 126, 144, 177
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	5 cut(s)	92, 95, 126, 144, 177
GsaI	CCCAGC	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	2 cut(s)	74, 213
HgaI	GACGC	1 cut(s)	168
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	2 cut(s)	55, 364
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	2 cut(s)	74, 213
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	2 cut(s)	12, 350
Hpy188III	TCNNGA	4 cut(s)	213, 239, 277, 301
Hpy8I	GTNNAC	1 cut(s)	224
Hpy99I	CGWCG	1 cut(s)	184
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4IV	ACGT	1 cut(s)	152
HpyCH4V	TGCA	2 cut(s)	150, 364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 176
HpySE526I	ACGT	1 cut(s)	152
Hsp92II	CATG	2 cut(s)	55, 364
HspAI	GCGC	1 cut(s)	164
Kpn2I	TCCGGA	1 cut(s)	212
Kzo9I	GATC	3 cut(s)	46, 196, 297
LguI	GCTCTTC	1 cut(s)	290
LmnI	GCTCC	2 cut(s)	255, 261
LpnPI	CCDG	9 cut(s)	36, 87, 90, 145, 160, 226, 234, 244, 291
Lsp1109I	GCAGC	1 cut(s)	130
MaeII	ACGT	1 cut(s)	152
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	3 cut(s)	48, 198, 299
MboI	GATC	3 cut(s)	46, 196, 297
MboII	GAAGA	4 cut(s)	147, 277, 321, 324
MhlI	GDGCHC	1 cut(s)	266
MroI	TCCGGA	1 cut(s)	212
MroXI	GAANNNNTTC	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	291
MspI	CCGG	2 cut(s)	74, 213
MspR9I	CCNGG	1 cut(s)	75
MvnI	CGCG	2 cut(s)	164, 179
MwoI	GCNNNNNNNGC	2 cut(s)	125, 176
NciI	CCSGG	1 cut(s)	75
NdeII	GATC	3 cut(s)	46, 196, 297
NlaIII	CATG	2 cut(s)	55, 364
NmuCI	GTSAC	1 cut(s)	301
PciSI	GCTCTTC	1 cut(s)	290
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	5 cut(s)	93, 96, 127, 145, 178
PspFI	CCCAGC	1 cut(s)	22
PspPI	GGNCC	1 cut(s)	67
PvuII	CAGCTG	1 cut(s)	291
RsaI	GTAC	2 cut(s)	136, 373
RsaNI	GTAC	2 cut(s)	135, 372
SapI	GCTCTTC	1 cut(s)	290
SatI	GCNGC	5 cut(s)	92, 95, 126, 144, 177
Sau3AI	GATC	3 cut(s)	46, 196, 297
Sau96I	GGNCC	1 cut(s)	67
ScaI	AGTACT	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	1 cut(s)	266
SetI	ASST	7 cut(s)	28, 34, 121, 155, 250, 285, 293
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
SsiI	CCGC	7 cut(s)	92, 95, 125, 162, 168, 177, 191
StyD4I	CCNGG	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	342
TaiI	ACGT	1 cut(s)	155
TaqI	TCGA	5 cut(s)	45, 182, 199, 238, 278
TatI	WGTACW	1 cut(s)	371
TauI	GCSGC	4 cut(s)	94, 97, 128, 179
TfiI	GAWTC	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	301
TspGWI	ACGGA	1 cut(s)	268
XmiI	GTMKAC	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	284
ZrmI	AGTACT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.