pycom01g10020

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
10876235 .. 10877846
1612 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 417 bp
ATGCCTGTACAAGTTGTAGCGTATCTTTCCCGTGTGCTAGAATCAGCATTCACGGCACTTGAAGGTCTTAACAAACAAGCATTCCTGACTGAATTAGGAAGCCGCTTGCATAAAGGGCTGCTAAATCATTGGCAGAAGTTCACTTTTAATCCTAGTGGAGGACTGCGGCTGAAGCGTGACATAACTGAATATGGAGAATTTGTGCGTAGTTTCAATGCTCCTTCCGTCGATGAAAAATTTGAATTGCTGGGAATAATGGCCAATGTCTTCATTGTTGCTCCTGAAAGTCTCTCGACTCTATTTGAGGGCACGCCAAGTATACGGAAAGATGCACAAAGGTTTATTGAGCTTCGAGACGACTACAAGAGCGCAAAGCTTGCTGCCAGACTTAGTTCCTTGTGGACAAGTTCTAGTTGA

Protein Analysis

139

Amino Acids

15.52

Weight (kDa)

9.0

Isoelectric Point (pI)

48.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec10_HB PF07393 4 - 128 3.2e-42 Exocyst complex component Sec10-like, alpha-helical bundle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 319
AciI CCGC 2 cut(s) 103, 166
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 2 cut(s) 197, 236
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 158
AgsI TTSAA 3 cut(s) 62, 214, 242
AluBI AGCT 2 cut(s) 349, 376
AluI AGCT 2 cut(s) 349, 376
Alw26I GTCTC 2 cut(s) 293, 348
AoxI GGCC 1 cut(s) 258
ApeKI GCWGC 2 cut(s) 118, 380
ApoI RAATTY 2 cut(s) 197, 236
AspLEI GCGC 1 cut(s) 371
BaeGI GKGCMC 1 cut(s) 311
BalI TGGCCA 1 cut(s) 260
BbsI GAAGAC 1 cut(s) 259
BbvI GCAGC 2 cut(s) 105, 367
BceAI ACGGC 1 cut(s) 69
BcoDI GTCTC 2 cut(s) 293, 348
BfaI CTAG 3 cut(s) 38, 153, 411
BisI GCNGC 4 cut(s) 103, 119, 167, 381
BlsI GCNGC 4 cut(s) 104, 120, 168, 382
BmsI GCATC 1 cut(s) 319
BpiI GAAGAC 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 1 cut(s) 158
BseLI CCNNNNNNNGG 1 cut(s) 158
BseSI GKGCMC 1 cut(s) 311
BseXI GCAGC 2 cut(s) 105, 367
BseYI CCCAGC 1 cut(s) 247
BshFI GGCC 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 2 cut(s) 293, 348
BsmBI CGTCTC 1 cut(s) 348
BsmI GAATGC 2 cut(s) 47, 80
BsnI GGCC 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 311
Bsp1407I TGTACA 1 cut(s) 7
BspACI CCGC 2 cut(s) 103, 166
BspANI GGCC 1 cut(s) 260
BsrGI TGTACA 1 cut(s) 7
BssNAI GTATAC 1 cut(s) 320
Bst1107I GTATAC 1 cut(s) 320
BstAPI GCANNNNNTGC 1 cut(s) 377
BstAUI TGTACA 1 cut(s) 7
BstC8I GCNNGC 3 cut(s) 107, 311, 378
BstDEI CTNAG 1 cut(s) 389
BstENI CCTNNNNNAGG 1 cut(s) 156
BstHHI GCGC 1 cut(s) 371
BstMAI GTCTC 2 cut(s) 293, 348
BstMWI GCNNNNNNNGC 4 cut(s) 53, 115, 172, 377
BstSLI GKGCMC 1 cut(s) 311
BstV1I GCAGC 2 cut(s) 105, 367
BstV2I GAAGAC 1 cut(s) 259
BstZ17I GTATAC 1 cut(s) 320
BsuRI GGCC 1 cut(s) 260
Cac8I GCNNGC 3 cut(s) 107, 311, 378
CfoI GCGC 1 cut(s) 371
Csp6I GTAC 1 cut(s) 8
CviJI RGCY 6 cut(s) 102, 118, 169, 260, 349, 376
CviKI_1 RGCY 6 cut(s) 102, 118, 169, 260, 349, 376
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 1 cut(s) 389
EaeI YGGCCR 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 191
EcoNI CCTNNNNNAGG 1 cut(s) 156
Esp3I CGTCTC 1 cut(s) 348
FaiI YATR 4 cut(s) 111, 182, 192, 320
FblI GTMKAC 1 cut(s) 319
Fnu4HI GCNGC 4 cut(s) 103, 119, 167, 381
Fsp4HI GCNGC 4 cut(s) 103, 119, 167, 381
FspBI CTAG 3 cut(s) 38, 153, 411
GlaI GCGC 1 cut(s) 370
GluI GCNGC 4 cut(s) 103, 119, 167, 381
GsaI CCCAGC 1 cut(s) 251
HaeIII GGCC 1 cut(s) 260
HhaI GCGC 1 cut(s) 371
Hin6I GCGC 1 cut(s) 369
HinP1I GCGC 1 cut(s) 369
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 2 cut(s) 41, 295
Hpy166II GTNNAC 3 cut(s) 141, 320, 402
Hpy188III TCNNGA 4 cut(s) 85, 281, 292, 353
Hpy8I GTNNAC 3 cut(s) 141, 320, 402
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 2 cut(s) 56, 231
HpyCH4V TGCA 2 cut(s) 109, 332
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 115, 172, 377
HpyF3I CTNAG 1 cut(s) 389
HspAI GCGC 1 cut(s) 369
LmnI GCTCC 2 cut(s) 223, 283
LpnPI CCDG 5 cut(s) 18, 98, 233, 294, 397
Lsp1109I GCAGC 2 cut(s) 105, 367
LweI GCATC 1 cut(s) 319
MaeI CTAG 3 cut(s) 38, 153, 411
MaeIII GTNAC 1 cut(s) 176
MboII GAAGA 1 cut(s) 259
MhlI GDGCHC 1 cut(s) 311
MlsI TGGCCA 1 cut(s) 260
MluCI AATT 4 cut(s) 92, 197, 236, 242
MluNI TGGCCA 1 cut(s) 260
MlyI GAGTC 1 cut(s) 289
MnlI CCTC 2 cut(s) 152, 298
Mox20I TGGCCA 1 cut(s) 260
MscI TGGCCA 1 cut(s) 260
MseI TTAA 2 cut(s) 69, 147
Msp20I TGGCCA 1 cut(s) 260
Mva1269I GAATGC 2 cut(s) 47, 80
MwoI GCNNNNNNNGC 4 cut(s) 53, 115, 172, 377
NmuCI GTSAC 1 cut(s) 176
PctI GAATGC 2 cut(s) 47, 80
PfeI GAWTC 1 cut(s) 41
PkrI GCNGC 4 cut(s) 104, 120, 168, 382
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 247
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 69, 147
SatI GCNGC 4 cut(s) 103, 119, 167, 381
SchI GAGTC 1 cut(s) 289
SduI GDGCHC 1 cut(s) 311
SetI ASST 4 cut(s) 67, 341, 351, 378
SfaNI GCATC 1 cut(s) 319
Sse9I AATT 4 cut(s) 92, 197, 236, 242
SsiI CCGC 2 cut(s) 103, 166
SspMI CTAG 3 cut(s) 38, 153, 411
TaqI TCGA 3 cut(s) 228, 293, 352
TasI AATT 4 cut(s) 92, 197, 236, 242
TatI WGTACW 1 cut(s) 7
TauI GCSGC 2 cut(s) 105, 169
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 2 cut(s) 69, 147
Tru9I TTAA 2 cut(s) 69, 147
TseFI GTSAC 1 cut(s) 176
TseI GCWGC 2 cut(s) 118, 380
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 2 cut(s) 246, 259
TspGWI ACGGA 2 cut(s) 214, 337
XagI CCTNNNNNAGG 1 cut(s) 156
XapI RAATTY 2 cut(s) 197, 236
XmiI GTMKAC 1 cut(s) 319
XspI CTAG 3 cut(s) 38, 153, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.