pycom01g10370

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Reverse (-)
11177958 .. 11178859
902 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 408 bp
ATGCCGGTTTTTGTTGGTTCTGAATACTTCGATTGTTGTTGCTTAGAACTGATAAGATTTCCTTCCCTGGTTGTTATTGGGAAATCACTCTACACCTTATACATTGGCCGAAACGATTTCACGTCCAATTTGGGAGCCATTGGTGTGGTATCTTCCTCAAGTGGTCTTACAAATTGCTTGCACCATCAAGGGCGTGCATTTCTGGTGCTTAATCTGGCACCAGTAGGTTGTTATCCATCATCTCTGGTGGGGCTTCCTCCTTCTGAACTTGATGCATTTGGATGCTCAATTGCTTACAGCAATGCAGTTGTGGACCACAATAACATGTTGAAGGAGGCACTTGGCCAAACTAGAGGCTTCCTTCCAAATGCTTCCCTCATATATGCAGACACTTCTCTGTTTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

136

Amino Acids

14.45

Weight (kDa)

5.39

Isoelectric Point (pI)

35.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 26 - 131 1.1e-07 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 217
AcoI YGGCCR 2 cut(s) 106, 343
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 1 cut(s) 331
AjiI CACGTC 1 cut(s) 123
AjnI CCWGG 1 cut(s) 66
AoxI GGCC 2 cut(s) 106, 343
AspS9I GGNCC 1 cut(s) 313
AvaII GGWCC 1 cut(s) 313
BalI TGGCCA 1 cut(s) 345
BanI GGYRCC 1 cut(s) 217
BccI CCATC 2 cut(s) 192, 244
BciT130I CCWGG 1 cut(s) 68
BfaI CTAG 2 cut(s) 351, 406
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 313
BmgBI CACGTC 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 2 cut(s) 136, 219
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 2 cut(s) 262, 272
BpuEI CTTGAG 1 cut(s) 142
BsaJI CCNNGG 1 cut(s) 66
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 307
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 66
BseGI GGATG 1 cut(s) 287
BseMI GCAATG 1 cut(s) 307
BseNI ACTGG 1 cut(s) 221
BshFI GGCC 2 cut(s) 108, 345
BshNI GGYRCC 1 cut(s) 217
BsiSI CCGG 1 cut(s) 5
BsnI GGCC 2 cut(s) 108, 345
BspANI GGCC 2 cut(s) 108, 345
BspLI GGNNCC 2 cut(s) 136, 219
BspT107I GGYRCC 1 cut(s) 217
BsrDI GCAATG 1 cut(s) 307
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 221
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 68
BstC8I GCNNGC 2 cut(s) 179, 195
BstDEI CTNAG 1 cut(s) 43
BstF5I GGATG 1 cut(s) 287
BstNI CCWGG 1 cut(s) 68
BstNSI RCATGY 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 66
BstXI CCANNNNNNTGG 1 cut(s) 145
BsuRI GGCC 2 cut(s) 108, 345
BtrI CACGTC 1 cut(s) 123
BtsCI GGATG 1 cut(s) 287
Cac8I GCNNGC 2 cut(s) 179, 195
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 1 cut(s) 313
CviAII CATG 1 cut(s) 325
CviJI RGCY 5 cut(s) 108, 137, 253, 345, 357
CviKI_1 RGCY 5 cut(s) 108, 137, 253, 345, 357
DdeI CTNAG 1 cut(s) 43
EaeI YGGCCR 2 cut(s) 106, 343
Eco47I GGWCC 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 66
EcoT22I ATGCAT 1 cut(s) 277
FaeI CATG 1 cut(s) 328
FaiI YATR 5 cut(s) 100, 326, 380, 382, 384
FalI AAGNNNNNCTT 2 cut(s) 46, 78
FatI CATG 1 cut(s) 324
FokI GGATG 1 cut(s) 294
FspBI CTAG 2 cut(s) 351, 406
HaeIII GGCC 2 cut(s) 108, 345
HapII CCGG 1 cut(s) 5
Hin1II CATG 1 cut(s) 328
HpaII CCGG 1 cut(s) 5
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 2 cut(s) 22, 265
Hpy8I GTNNAC 1 cut(s) 313
HpyAV CCTTC 4 cut(s) 72, 270, 325, 371
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 5 cut(s) 181, 197, 275, 305, 386
HpyF3I CTNAG 1 cut(s) 43
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 1 cut(s) 328
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 7 cut(s) 18, 53, 80, 188, 200, 230, 234
LweI GCATC 2 cut(s) 262, 272
MaeI CTAG 2 cut(s) 351, 406
MaeII ACGT 1 cut(s) 122
MboII GAAGA 1 cut(s) 144
MfeI CAATTG 1 cut(s) 288
MlsI TGGCCA 1 cut(s) 345
MluCI AATT 3 cut(s) 127, 172, 288
MluNI TGGCCA 1 cut(s) 345
MnlI CCTC 5 cut(s) 166, 267, 328, 347, 386
Mox20I TGGCCA 1 cut(s) 345
Mph1103I ATGCAT 1 cut(s) 277
MscI TGGCCA 1 cut(s) 345
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 2 cut(s) 143, 280
Msp20I TGGCCA 1 cut(s) 345
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 68
MunI CAATTG 1 cut(s) 288
MvaI CCWGG 1 cut(s) 68
NlaIII CATG 1 cut(s) 328
NlaIV GGNNCC 2 cut(s) 136, 219
NsiI ATGCAT 1 cut(s) 277
NspI RCATGY 1 cut(s) 328
PciI ACATGT 1 cut(s) 324
PscI ACATGT 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 136, 219
PspPI GGNCC 1 cut(s) 313
RseI CAYNNNNRTG 2 cut(s) 143, 280
SaqAI TTAA 1 cut(s) 210
Sau96I GGNCC 1 cut(s) 313
ScrFI CCNGG 1 cut(s) 68
SetI ASST 3 cut(s) 98, 125, 229
SfaNI GCATC 2 cut(s) 262, 272
SinI GGWCC 1 cut(s) 313
SmiMI CAYNNNNRTG 2 cut(s) 143, 280
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
Sse9I AATT 3 cut(s) 127, 172, 288
SspMI CTAG 2 cut(s) 351, 406
StyD4I CCNGG 1 cut(s) 66
TaiI ACGT 1 cut(s) 125
TaqI TCGA 1 cut(s) 30
TasI AATT 3 cut(s) 127, 172, 288
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 313
XceI RCATGY 1 cut(s) 328
XspI CTAG 2 cut(s) 351, 406
Zsp2I ATGCAT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.