pycom01g10680
TCP Family

Transcription factor TCP9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
11479268 .. 11479588
321 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g10680.1

Sequence Viewer

Length: 261 bp
ATGCTCCCGGTCACAATGCAAATGCCCATGTCTGTACAGGTATCCGTCTCTGGCCCGACTCAACGATCCTCCACCAAAGACCGCCATACGAAACTGACGCGGAAACTCGACCACAAGTCCGACAGACAAACCATCCGTTGGCTACTCGAACACGCCGAGCAAGCCATCATTGAAGCCACAAGTGCGGGTCCTGGTGAGGGTTGCGAGGTCATGAGGGCCGAATCGATCTCCGCCTACCCATTGCCAGTGGCAGTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

87

Amino Acids

9.53

Weight (kDa)

9.03

Isoelectric Point (pI)

51.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 31 - 64 1.8e-06 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 138
AccII CGCG 1 cut(s) 100
AciI CCGC 4 cut(s) 82, 100, 185, 231
AclWI GGATC 1 cut(s) 60
AfaI GTAC 1 cut(s) 36
AfiI CCNNNNNNNGG 2 cut(s) 138, 197
AgsI TTSAA 1 cut(s) 173
AhdI GACNNNNNGTC 1 cut(s) 115
AjnI CCWGG 1 cut(s) 190
Alw26I GTCTC 1 cut(s) 52
AlwI GGATC 1 cut(s) 60
AoxI GGCC 2 cut(s) 52, 216
AspS9I GGNCC 3 cut(s) 53, 188, 216
AsuC2I CCSGG 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 206
AvaII GGWCC 1 cut(s) 188
BccI CCATC 2 cut(s) 140, 173
BciT130I CCWGG 1 cut(s) 192
BciVI GTATCC 1 cut(s) 52
BcnI CCSGG 1 cut(s) 8
BcoDI GTCTC 1 cut(s) 52
BfuI GTATCC 1 cut(s) 52
Bme1390I CCNGG 2 cut(s) 8, 192
Bme18I GGWCC 1 cut(s) 188
BmeRI GACNNNNNGTC 1 cut(s) 115
BmgT120I GGNCC 3 cut(s) 53, 188, 216
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 2 cut(s) 8, 192
BpuMI CCSGG 1 cut(s) 8
Bsa29I ATCGAT 1 cut(s) 224
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 197
Bse1I ACTGG 1 cut(s) 245
Bse3DI GCAATG 1 cut(s) 239
BseBI CCWGG 1 cut(s) 192
BseCI ATCGAT 1 cut(s) 224
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 2 cut(s) 138, 197
BseMI GCAATG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 245
Bsh1236I CGCG 1 cut(s) 100
BshFI GGCC 2 cut(s) 54, 218
BshVI ATCGAT 1 cut(s) 224
BsiSI CCGG 1 cut(s) 8
BslI CCNNNNNNNGG 2 cut(s) 138, 197
BsmAI GTCTC 1 cut(s) 52
BsmBI CGTCTC 1 cut(s) 52
BsnI GGCC 2 cut(s) 54, 218
Bsp1407I TGTACA 1 cut(s) 34
Bsp143I GATC 2 cut(s) 65, 225
BspACI CCGC 4 cut(s) 82, 100, 185, 231
BspANI GGCC 2 cut(s) 54, 218
BspDI ATCGAT 1 cut(s) 224
BspFNI CGCG 1 cut(s) 100
BspHI TCATGA 1 cut(s) 210
BspLI GGNNCC 1 cut(s) 189
BspPI GGATC 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 239
BsrGI TGTACA 1 cut(s) 34
BsrI ACTGG 1 cut(s) 245
BssMI GATC 2 cut(s) 65, 225
Bst2UI CCWGG 1 cut(s) 192
BstAUI TGTACA 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 162
BstF5I GGATG 1 cut(s) 132
BstFNI CGCG 1 cut(s) 100
BstKTI GATC 2 cut(s) 68, 228
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 2 cut(s) 65, 225
BstMWI GCNNNNNNNGC 2 cut(s) 161, 182
BstNI CCWGG 1 cut(s) 192
BstSCI CCNGG 2 cut(s) 6, 190
BstUI CGCG 1 cut(s) 100
Bsu15I ATCGAT 1 cut(s) 224
BsuI GTATCC 1 cut(s) 52
BsuRI GGCC 2 cut(s) 54, 218
BsuTUI ATCGAT 1 cut(s) 224
BtsCI GGATG 1 cut(s) 132
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 2 cut(s) 252, 258
Cac8I GCNNGC 1 cut(s) 162
CciI TCATGA 1 cut(s) 210
Cfr13I GGNCC 3 cut(s) 53, 188, 216
ClaI ATCGAT 1 cut(s) 224
CseI GACGC 1 cut(s) 106
Csp6I GTAC 1 cut(s) 35
CviAII CATG 2 cut(s) 28, 211
CviJI RGCY 5 cut(s) 54, 142, 164, 176, 218
CviKI_1 RGCY 5 cut(s) 54, 142, 164, 176, 218
CviQI GTAC 1 cut(s) 35
DpnI GATC 2 cut(s) 67, 227
DpnII GATC 2 cut(s) 65, 225
DriI GACNNNNNGTC 1 cut(s) 115
Eam1105I GACNNNNNGTC 1 cut(s) 115
EciI GGCGGA 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 190
Esp3I CGTCTC 1 cut(s) 52
FaeI CATG 2 cut(s) 31, 214
FaiI YATR 3 cut(s) 29, 87, 212
FatI CATG 2 cut(s) 27, 210
FauI CCCGC 1 cut(s) 178
FokI GGATG 1 cut(s) 119
HaeIII GGCC 2 cut(s) 54, 218
HapII CCGG 1 cut(s) 8
HgaI GACGC 1 cut(s) 106
Hin1II CATG 2 cut(s) 31, 214
HinfI GANTC 2 cut(s) 58, 221
HpaII CCGG 1 cut(s) 8
HphI GGTGA 1 cut(s) 206
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 1 cut(s) 211
HpyCH4V TGCA 1 cut(s) 19
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 182
Hsp92II CATG 2 cut(s) 31, 214
Kzo9I GATC 2 cut(s) 65, 225
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 5 cut(s) 21, 23, 36, 177, 204
MaeIII GTNAC 1 cut(s) 10
MalI GATC 2 cut(s) 67, 227
MboI GATC 2 cut(s) 65, 225
MlyI GAGTC 1 cut(s) 52
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 4 cut(s) 79, 190, 199, 207
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 2 cut(s) 8, 192
MvaI CCWGG 1 cut(s) 192
MvnI CGCG 1 cut(s) 100
MwoI GCNNNNNNNGC 2 cut(s) 161, 182
NciI CCSGG 1 cut(s) 8
NdeII GATC 2 cut(s) 65, 225
NlaIII CATG 2 cut(s) 31, 214
NlaIV GGNNCC 1 cut(s) 189
NmeAIII GCCGAG 1 cut(s) 181
NmuCI GTSAC 1 cut(s) 10
PagI TCATGA 1 cut(s) 210
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PfeI GAWTC 1 cut(s) 221
PflMI CCANNNNNTGG 1 cut(s) 138
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PpuMI RGGWCCY 1 cut(s) 188
Psp5II RGGWCCY 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 190
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 3 cut(s) 53, 188, 216
PspPPI RGGWCCY 1 cut(s) 188
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
Sau3AI GATC 2 cut(s) 65, 225
Sau96I GGNCC 3 cut(s) 53, 188, 216
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 2 cut(s) 8, 192
SetI ASST 2 cut(s) 42, 210
SinI GGWCC 1 cut(s) 188
SsiI CCGC 4 cut(s) 82, 100, 185, 231
StyD4I CCNGG 2 cut(s) 6, 190
TaqI TCGA 3 cut(s) 108, 147, 224
TatI WGTACW 1 cut(s) 34
TfiI GAWTC 1 cut(s) 221
TscAI CASTG 2 cut(s) 252, 258
TseFI GTSAC 1 cut(s) 10
Tsp45I GTSAC 1 cut(s) 10
TspGWI ACGGA 2 cut(s) 34, 125
TspRI CASTG 2 cut(s) 252, 258
Van91I CCANNNNNTGG 1 cut(s) 138
VpaK11BI GGWCC 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.