pycom01g10900

Phosphatidylinositol 4-kinase gamma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
11683256 .. 11683573
318 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 318 bp
ATGTCGTCCGCCGGTATTGCTACTCTTACTCCGGCTCACTGTGAGCCCGGGTTTCCCCAACCGTGTATGTCTTTGGATGAATCGATATTGATATATCTCTCTGTGTCTGGGTCAACTACTCCCATGAGTGTTTTGGAATCGGACTCTATTGAGTCAGTGAAGCTTAGGATACAAACCTACAAAGGGTTTGTTGCTAAGAAGCAAAAGTTAGTTTGTGGAGGTAGAGAACTGGCTAGGAGCAATTCCATACTCCGGGAATACGGGGTAACGGATGGGAATATTCTACATTTGGTCCTTAGGCTTTCTGACCTTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PI3_PI4_kinase ubiquitin

Protein Analysis

106

Amino Acids

11.37

Weight (kDa)

6.71

Isoelectric Point (pI)

65.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 33 - 101 2.9e-14 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 9
AfiI CCNNNNNNNGG 2 cut(s) 183, 252
AgsI TTSAA 1 cut(s) 314
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Ama87I CYCGRG 1 cut(s) 47
AspS9I GGNCC 1 cut(s) 292
AsuC2I CCSGG 3 cut(s) 48, 49, 254
AvaI CYCGRG 1 cut(s) 47
AvaII GGWCC 1 cut(s) 292
AxyI CCTNAGG 1 cut(s) 296
BanII GRGCYC 1 cut(s) 48
BccI CCATC 1 cut(s) 266
BciVI GTATCC 1 cut(s) 162
BcnI CCSGG 3 cut(s) 48, 49, 254
BfaI CTAG 1 cut(s) 234
BfuI GTATCC 1 cut(s) 162
Bme1390I CCNGG 3 cut(s) 48, 49, 254
Bme18I GGWCC 1 cut(s) 292
BmeT110I CYCGRG 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 292
BmrFI CCNGG 3 cut(s) 48, 49, 254
Bpu10I CCTNAGC 1 cut(s) 164
BpuMI CCSGG 3 cut(s) 48, 49, 254
Bsa29I ATCGAT 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 47
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 252
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 234
Bse21I CCTNAGG 1 cut(s) 296
BseCI ATCGAT 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 2 cut(s) 82, 277
BseLI CCNNNNNNNGG 2 cut(s) 183, 252
BseNI ACTGG 1 cut(s) 234
BshVI ATCGAT 1 cut(s) 83
BsiHKCI CYCGRG 1 cut(s) 47
BsiSI CCGG 4 cut(s) 12, 32, 48, 253
BslI CCNNNNNNNGG 2 cut(s) 183, 252
BsoBI CYCGRG 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 48
BspACI CCGC 1 cut(s) 9
BspDI ATCGAT 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 1 cut(s) 234
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 47
Bst4CI ACNGT 2 cut(s) 41, 63
BstDEI CTNAG 3 cut(s) 164, 195, 296
BstF5I GGATG 2 cut(s) 82, 277
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstSCI CCNGG 3 cut(s) 46, 47, 252
Bsu15I ATCGAT 1 cut(s) 83
Bsu36I CCTNAGG 1 cut(s) 296
BsuI GTATCC 1 cut(s) 162
BsuTUI ATCGAT 1 cut(s) 83
BtsCI GGATG 2 cut(s) 82, 277
BtsIMutI CAGTG 2 cut(s) 37, 162
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 1 cut(s) 292
Cfr9I CCCGGG 1 cut(s) 47
ClaI ATCGAT 1 cut(s) 83
CviAII CATG 1 cut(s) 124
CviJI RGCY 5 cut(s) 35, 46, 163, 233, 301
CviKI_1 RGCY 5 cut(s) 35, 46, 163, 233, 301
DdeI CTNAG 3 cut(s) 164, 195, 296
Eco24I GRGCYC 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 292
Eco81I CCTNAGG 1 cut(s) 296
Eco88I CYCGRG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 48
FaeI CATG 1 cut(s) 127
FaiI YATR 4 cut(s) 68, 94, 125, 248
FatI CATG 1 cut(s) 123
FokI GGATG 2 cut(s) 89, 284
FriOI GRGCYC 1 cut(s) 48
FspBI CTAG 1 cut(s) 234
HapII CCGG 4 cut(s) 12, 32, 48, 253
Hin1II CATG 1 cut(s) 127
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 4 cut(s) 80, 137, 143, 152
HpaII CCGG 4 cut(s) 12, 32, 48, 253
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 2 cut(s) 142, 307
Hpy8I GTNNAC 1 cut(s) 114
HpyCH4III ACNGT 2 cut(s) 41, 63
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 3 cut(s) 164, 195, 296
Hsp92II CATG 1 cut(s) 127
LmnI GCTCC 1 cut(s) 237
LpnPI CCDG 6 cut(s) 25, 45, 61, 93, 215, 266
MaeI CTAG 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 265
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 1 cut(s) 241
MlyI GAGTC 2 cut(s) 137, 161
MnlI CCTC 1 cut(s) 212
MspI CCGG 4 cut(s) 12, 32, 48, 253
MspR9I CCNGG 3 cut(s) 48, 49, 254
MwoI GCNNNNNNNGC 1 cut(s) 17
NciI CCSGG 3 cut(s) 48, 49, 254
NlaIII CATG 1 cut(s) 127
PfeI GAWTC 2 cut(s) 80, 137
PfoI TCCNGGA 1 cut(s) 252
PleI GAGTC 2 cut(s) 137, 160
PpsI GAGTC 2 cut(s) 137, 160
PspPI GGNCC 1 cut(s) 292
Sau96I GGNCC 1 cut(s) 292
SchI GAGTC 2 cut(s) 137, 161
ScrFI CCNGG 3 cut(s) 48, 49, 254
SduI GDGCHC 1 cut(s) 48
SetI ASST 4 cut(s) 165, 179, 223, 312
SinI GGWCC 1 cut(s) 292
SmaI CCCGGG 1 cut(s) 49
Sse9I AATT 1 cut(s) 241
SsiI CCGC 1 cut(s) 9
SspI AATATT 1 cut(s) 280
SspMI CTAG 1 cut(s) 234
StyD4I CCNGG 3 cut(s) 46, 47, 252
TaaI ACNGT 2 cut(s) 41, 63
TaqI TCGA 1 cut(s) 83
TasI AATT 1 cut(s) 241
TfiI GAWTC 2 cut(s) 80, 137
TscAI CASTG 2 cut(s) 44, 162
TspDTI ATGAA 1 cut(s) 93
TspGWI ACGGA 1 cut(s) 284
TspMI CCCGGG 1 cut(s) 47
TspRI CASTG 2 cut(s) 44, 162
VpaK11BI GGWCC 1 cut(s) 292
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XmaI CCCGGG 1 cut(s) 47
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.