pycom01g11460
MYB Family

Protein LHY-like isoform X1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Reverse (-)
12479809 .. 12480203
395 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11460.2

Sequence Viewer

Length: 315 bp
ATGACTAGGGTACCTGTTCCATTAATGGATTCTGGTCAAGCTCCACCGACCAAAATTGAGAGAGGAGAGAATTCTCTTCGAATTCCTTCTTTGCGGGATCAACAATCGGACCCAAAACACTCGGAAGCTGTGGAAGCTCACCATTCAGCTTTGAAATCACCAACGATGCCTAATAGCGATGATGACATGGACTTTGCATCAACTGAAGAAATTCACGATTCAAACAATGCAAAGAAAACAGGTCTACCATTCCTCATATGGTTCCAACACACCTTCCGGCAGTGGAGTAGAGACAGATGCGTCAAAGAAGCGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

11.83

Weight (kDa)

5.91

Isoelectric Point (pI)

57.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 299
Acc65I GGTACC 1 cut(s) 10
AccB1I GGYRCC 1 cut(s) 10
AccI GTMKAC 1 cut(s) 244
AciI CCGC 1 cut(s) 94
AclWI GGATC 1 cut(s) 105
AcsI RAATTY 3 cut(s) 70, 81, 210
AcuI CTGAAG 1 cut(s) 225
AfaI GTAC 1 cut(s) 12
AgsI TTSAA 2 cut(s) 154, 222
AluBI AGCT 4 cut(s) 41, 128, 137, 149
AluI AGCT 4 cut(s) 41, 128, 137, 149
Alw26I GTCTC 1 cut(s) 285
AlwI GGATC 1 cut(s) 105
ApoI RAATTY 3 cut(s) 70, 81, 210
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
AseI ATTAAT 1 cut(s) 23
Asp700I GAANNNNTTC 2 cut(s) 85, 210
Asp718I GGTACC 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 109
AsuHPI GGTGA 2 cut(s) 131, 150
AsuII TTCGAA 1 cut(s) 79
AvaII GGWCC 1 cut(s) 109
BaeI ACNNNNGTAYC 1 cut(s) 27
BanI GGYRCC 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 285
BfaI CTAG 1 cut(s) 6
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 3 cut(s) 12, 111, 263
BmsI GCATC 3 cut(s) 156, 206, 287
Bpu14I TTCGAA 1 cut(s) 79
BseRI GAGGAG 1 cut(s) 78
BshNI GGYRCC 1 cut(s) 10
BsiSI CCGG 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 285
Bsp119I TTCGAA 1 cut(s) 79
Bsp143I GATC 1 cut(s) 97
BspACI CCGC 1 cut(s) 94
BspLI GGNNCC 3 cut(s) 12, 111, 263
BspPI GGATC 1 cut(s) 105
BspT104I TTCGAA 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 10
BssMI GATC 1 cut(s) 97
Bst6I CTCTTC 1 cut(s) 81
BstBI TTCGAA 1 cut(s) 79
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 1 cut(s) 134
BtgZI GCGATG 1 cut(s) 192
BtsI GCAGTG 1 cut(s) 287
BtsIMutI CAGTG 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 109
CseI GACGC 1 cut(s) 289
Csp6I GTAC 1 cut(s) 11
CviAII CATG 1 cut(s) 187
CviJI RGCY 4 cut(s) 41, 128, 137, 149
CviKI_1 RGCY 4 cut(s) 41, 128, 137, 149
CviQI GTAC 1 cut(s) 11
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
DrdI GACNNNNNNGTC 1 cut(s) 299
DseDI GACNNNNNNGTC 1 cut(s) 299
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 225
EcoRI GAATTC 2 cut(s) 70, 81
FaeI CATG 1 cut(s) 190
FaiI YATR 3 cut(s) 188, 257, 259
FatI CATG 1 cut(s) 186
FauI CCCGC 1 cut(s) 87
FauNDI CATATG 1 cut(s) 257
FblI GTMKAC 1 cut(s) 244
FspBI CTAG 1 cut(s) 6
HapII CCGG 1 cut(s) 277
HgaI GACGC 1 cut(s) 289
Hin1II CATG 1 cut(s) 190
HinfI GANTC 2 cut(s) 29, 218
HpaII CCGG 1 cut(s) 277
HphI GGTGA 2 cut(s) 131, 150
Hpy166II GTNNAC 1 cut(s) 245
Hpy188I TCNGA 2 cut(s) 109, 124
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 1 cut(s) 245
HpyAV CCTTC 2 cut(s) 96, 283
HpyCH4V TGCA 2 cut(s) 197, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
Hsp92II CATG 1 cut(s) 190
KpnI GGTACC 1 cut(s) 14
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 4 cut(s) 18, 27, 225, 290
LweI GCATC 3 cut(s) 156, 206, 287
MaeI CTAG 1 cut(s) 6
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 2 cut(s) 68, 218
MluCI AATT 4 cut(s) 54, 70, 81, 210
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 2 cut(s) 56, 263
MroXI GAANNNNTTC 2 cut(s) 85, 210
MseI TTAA 1 cut(s) 23
MspI CCGG 1 cut(s) 277
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeI CATATG 1 cut(s) 257
NdeII GATC 1 cut(s) 97
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 3 cut(s) 12, 111, 263
NspV TTCGAA 1 cut(s) 79
PdmI GAANNNNTTC 2 cut(s) 85, 210
PfeI GAWTC 2 cut(s) 29, 218
PshBI ATTAAT 1 cut(s) 23
PspN4I GGNNCC 3 cut(s) 12, 111, 263
PspPI GGNCC 1 cut(s) 109
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 23
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 1 cut(s) 109
SetI ASST 7 cut(s) 16, 43, 130, 139, 151, 244, 275
SfaNI GCATC 3 cut(s) 156, 206, 287
SfuI TTCGAA 1 cut(s) 79
SinI GGWCC 1 cut(s) 109
Sse9I AATT 4 cut(s) 54, 70, 81, 210
SsiI CCGC 1 cut(s) 94
SspMI CTAG 1 cut(s) 6
TaqI TCGA 1 cut(s) 79
TasI AATT 4 cut(s) 54, 70, 81, 210
TfiI GAWTC 2 cut(s) 29, 218
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 1 cut(s) 287
TspRI CASTG 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 109
VspI ATTAAT 1 cut(s) 23
XapI RAATTY 3 cut(s) 70, 81, 210
XcmI CCANNNNNNNNNTGG 1 cut(s) 255
XmiI GTMKAC 1 cut(s) 244
XmnI GAANNNNTTC 2 cut(s) 85, 210
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.