pycom01g11470
MYB Family

Protein LHY-like isoform X1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Reverse (-)
12480400 .. 12481441
1042 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11470.3

Sequence Viewer

Length: 852 bp
ATGGTCGGTGGTTCCACAATAGTCTTTCCCGGAACTTCAGAGCAAAAAGCTTCTTACACTTATTCAGGAGTTTTCAGTGCTAAATTACCGAGGCTTGAGATCTTTGAGTTTCATCAGAGTATTTGGGATATATTCACTTGTATTCTGTCTGGCATCACACCTGTAAACATGAATACTGACAAGAAAAGGTTTCACTACCAGCTGGAGAAGGAGGCACAAGCTAGTGGTGTTTCGATAGGACAATCAATTGGAATAGATATTCCACCTCCACGCCCCAGAAGAAAACCAAGCAATCCTTATCGTCGGAAGTCTAGTTCAGCTCCTTCCACATGGGCCACATCATATGCGGGAACAAAGGATGGAAGAAGTTTATCATCAGCATCTTCTTCACACTGTAAACGAGTAGTGAACTTGGAAATCAAACCACTTCATGAGGTTATTGTTTTTATTATATACGTTACATGTAAGTCACTTGACCTACGACTTCTTTACTGTCAGAGACCTATGAGAAAAGAAGTGTCAAAAAATACAGAAAATCAGGATGGCAATTCCTCAGATGTCTTCACCTTGCGCCGAGAAGATCACAGTTCCTCTGTTTCTTCCGCAAACAATAATGCCATACCTTCGCAGGTAGCACTCGAAAATCCTGGTACGTATAGGGAGTTTGTGCCTTCGGTGAAAGGGGTCATAACTCAGCATGCAACAAATGAATCTCATGTCACTATGAAACGAAAAGAAAATCCGCATATGCATACAATGTATGCCAAAAGGATAGCTGAAGATAATGGCACAAGTGAAGCCTTAGAGTCAGGGAACACTAACAGTGCTTTCCATAAGAAGTTTTTTCAATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

284

Amino Acids

31.61

Weight (kDa)

9.44

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 619
AciI CCGC 3 cut(s) 347, 603, 743
AcuI CTGAAG 2 cut(s) 21, 798
AfaI GTAC 1 cut(s) 652
AflIII ACRYGT 1 cut(s) 461
AgsI TTSAA 1 cut(s) 848
AjnI CCWGG 1 cut(s) 646
AloI GAACNNNNNNTCC 2 cut(s) 298, 330
AluBI AGCT 5 cut(s) 50, 202, 221, 320, 776
AluI AGCT 5 cut(s) 50, 202, 221, 320, 776
Alw26I GTCTC 1 cut(s) 493
AoxI GGCC 1 cut(s) 333
AspLEI GCGC 1 cut(s) 573
AspS9I GGNCC 1 cut(s) 333
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 2 cut(s) 556, 688
BbsI GAAGAC 1 cut(s) 553
BccI CCATC 2 cut(s) 353, 536
BciT130I CCWGG 1 cut(s) 648
BcnI CCSGG 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 493
BfaI CTAG 2 cut(s) 222, 312
BfuAI ACCTGC 1 cut(s) 619
BglII AGATCT 1 cut(s) 99
Bme1390I CCNGG 2 cut(s) 30, 648
BmgT120I GGNCC 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 13
BmrFI CCNGG 2 cut(s) 30, 648
BmsI GCATC 2 cut(s) 162, 389
BpiI GAAGAC 1 cut(s) 553
BpmI CTGGAG 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 30
BsaAI YACGTR 1 cut(s) 654
BsaI GGTCTC 1 cut(s) 493
BsaJI CCNNGG 1 cut(s) 89
BseBI CCWGG 1 cut(s) 648
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 2 cut(s) 364, 547
BseMII CTCAG 2 cut(s) 567, 707
BshFI GGCC 1 cut(s) 335
BsiSI CCGG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 493
BsnI GGCC 1 cut(s) 335
Bso31I GGTCTC 1 cut(s) 493
Bsp143I GATC 2 cut(s) 99, 580
BspACI CCGC 3 cut(s) 347, 603, 743
BspANI GGCC 1 cut(s) 335
BspCNI CTCAG 2 cut(s) 566, 706
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 1 cut(s) 13
BspMI ACCTGC 1 cut(s) 619
BspTNI GGTCTC 1 cut(s) 493
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 2 cut(s) 99, 580
Bst2UI CCWGG 1 cut(s) 648
Bst4CI ACNGT 4 cut(s) 395, 494, 587, 824
BstBAI YACGTR 1 cut(s) 654
BstC8I GCNNGC 1 cut(s) 699
BstDEI CTNAG 3 cut(s) 553, 693, 802
BstF5I GGATG 2 cut(s) 364, 547
BstHHI GCGC 1 cut(s) 573
BstKTI GATC 2 cut(s) 102, 583
BstMAI GTCTC 1 cut(s) 493
BstMBI GATC 2 cut(s) 99, 580
BstNI CCWGG 1 cut(s) 648
BstNSI RCATGY 2 cut(s) 465, 701
BstSCI CCNGG 2 cut(s) 28, 646
BstSNI TACGTA 1 cut(s) 654
BstV2I GAAGAC 1 cut(s) 553
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BsuRI GGCC 1 cut(s) 335
BtsCI GGATG 2 cut(s) 364, 547
BtsIMutI CAGTG 3 cut(s) 82, 391, 829
BveI ACCTGC 1 cut(s) 619
Cac8I GCNNGC 1 cut(s) 699
CciI TCATGA 1 cut(s) 430
CfoI GCGC 1 cut(s) 573
Cfr13I GGNCC 1 cut(s) 333
Csp6I GTAC 1 cut(s) 651
CviAII CATG 6 cut(s) 169, 330, 431, 462, 698, 716
CviJI RGCY 8 cut(s) 50, 94, 202, 221, 320, 335, 776, 800
CviKI_1 RGCY 8 cut(s) 50, 94, 202, 221, 320, 335, 776, 800
CviQI GTAC 1 cut(s) 651
DdeI CTNAG 3 cut(s) 553, 693, 802
DpnI GATC 2 cut(s) 101, 582
DpnII GATC 2 cut(s) 99, 580
Eco105I TACGTA 1 cut(s) 654
Eco31I GGTCTC 1 cut(s) 493
Eco57I CTGAAG 2 cut(s) 21, 798
EcoRII CCWGG 1 cut(s) 646
EcoT22I ATGCAT 1 cut(s) 753
FaeI CATG 6 cut(s) 172, 333, 434, 465, 701, 719
FalI AAGNNNNNCTT 2 cut(s) 280, 312
FatI CATG 6 cut(s) 168, 329, 430, 461, 697, 715
FauI CCCGC 1 cut(s) 340
FauNDI CATATG 2 cut(s) 343, 747
FokI GGATG 2 cut(s) 371, 554
FspBI CTAG 2 cut(s) 222, 312
GlaI GCGC 1 cut(s) 572
GsuI CTGGAG 1 cut(s) 224
HaeIII GGCC 1 cut(s) 335
HapII CCGG 1 cut(s) 30
HhaI GCGC 1 cut(s) 573
Hin1II CATG 6 cut(s) 172, 333, 434, 465, 701, 719
Hin6I GCGC 1 cut(s) 571
HinP1I GCGC 1 cut(s) 571
HindIII AAGCTT 1 cut(s) 48
HinfI GANTC 2 cut(s) 710, 806
HpaII CCGG 1 cut(s) 30
HphI GGTGA 2 cut(s) 556, 688
Hpy166II GTNNAC 3 cut(s) 166, 398, 409
Hpy188I TCNGA 5 cut(s) 40, 117, 306, 498, 556
Hpy188III TCNNGA 3 cut(s) 66, 431, 539
Hpy8I GTNNAC 3 cut(s) 166, 398, 409
Hpy99I CGWCG 1 cut(s) 306
HpyAV CCTTC 4 cut(s) 202, 333, 633, 681
HpyCH4III ACNGT 4 cut(s) 395, 494, 587, 824
HpyCH4IV ACGT 2 cut(s) 456, 653
HpyCH4V TGCA 2 cut(s) 701, 751
HpyF3I CTNAG 3 cut(s) 553, 693, 802
HpySE526I ACGT 2 cut(s) 456, 653
Hsp92II CATG 6 cut(s) 172, 333, 434, 465, 701, 719
HspAI GCGC 1 cut(s) 571
Kzo9I GATC 2 cut(s) 99, 580
LmnI GCTCC 1 cut(s) 325
LweI GCATC 2 cut(s) 162, 389
MaeI CTAG 2 cut(s) 222, 312
MaeII ACGT 2 cut(s) 456, 653
MaeIII GTNAC 3 cut(s) 457, 468, 718
MalI GATC 2 cut(s) 101, 582
MboI GATC 2 cut(s) 99, 580
MboII GAAGA 8 cut(s) 291, 375, 375, 378, 553, 590, 591, 791
MfeI CAATTG 1 cut(s) 246
MflI RGATCY 1 cut(s) 99
MluCI AATT 3 cut(s) 83, 246, 547
MlyI GAGTC 1 cut(s) 815
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 6 cut(s) 84, 205, 276, 427, 562, 601
Mph1103I ATGCAT 1 cut(s) 753
MspA1I CMGCKG 1 cut(s) 202
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 2 cut(s) 30, 648
MunI CAATTG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 648
NciI CCSGG 1 cut(s) 30
NdeI CATATG 2 cut(s) 343, 747
NdeII GATC 2 cut(s) 99, 580
NlaIII CATG 6 cut(s) 172, 333, 434, 465, 701, 719
NlaIV GGNNCC 1 cut(s) 13
NmeAIII GCCGAG 1 cut(s) 599
NmuCI GTSAC 2 cut(s) 468, 718
NsiI ATGCAT 1 cut(s) 753
NspI RCATGY 2 cut(s) 465, 701
PaeI GCATGC 1 cut(s) 701
PagI TCATGA 1 cut(s) 430
PciI ACATGT 1 cut(s) 461
PfeI GAWTC 1 cut(s) 710
PfoI TCCNGGA 1 cut(s) 28
PleI GAGTC 1 cut(s) 814
PpsI GAGTC 1 cut(s) 814
Ppu21I YACGTR 1 cut(s) 654
PscI ACATGT 1 cut(s) 461
Psp6I CCWGG 1 cut(s) 646
PspGI CCWGG 1 cut(s) 646
PspN4I GGNNCC 1 cut(s) 13
PspPI GGNCC 1 cut(s) 333
PsuI RGATCY 1 cut(s) 99
PvuII CAGCTG 1 cut(s) 202
RsaI GTAC 1 cut(s) 652
RsaNI GTAC 1 cut(s) 651
Sau3AI GATC 2 cut(s) 99, 580
Sau96I GGNCC 1 cut(s) 333
SchI GAGTC 1 cut(s) 815
ScrFI CCNGG 2 cut(s) 30, 648
SfaNI GCATC 2 cut(s) 162, 389
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
SnaBI TACGTA 1 cut(s) 654
SphI GCATGC 1 cut(s) 701
Sse9I AATT 3 cut(s) 83, 246, 547
SsiI CCGC 3 cut(s) 347, 603, 743
SspMI CTAG 2 cut(s) 222, 312
StyD4I CCNGG 2 cut(s) 28, 646
TaaI ACNGT 4 cut(s) 395, 494, 587, 824
TaiI ACGT 2 cut(s) 459, 656
TaqI TCGA 2 cut(s) 233, 639
TasI AATT 3 cut(s) 83, 246, 547
TfiI GAWTC 1 cut(s) 710
TscAI CASTG 3 cut(s) 82, 398, 829
TseFI GTSAC 2 cut(s) 468, 718
Tsp45I GTSAC 2 cut(s) 468, 718
TspDTI ATGAA 5 cut(s) 101, 185, 419, 723, 740
TspRI CASTG 3 cut(s) 82, 398, 829
XceI RCATGY 2 cut(s) 465, 701
XspI CTAG 2 cut(s) 222, 312
Zsp2I ATGCAT 1 cut(s) 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.