pycom01g11540

Soluble inorganic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
12546891 .. 12548933
2043 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 672 bp
ATGGCTTCTGAAGATCAAAGTGAAGAAGCTAAAGCAGCTATTCAAGAACACAAAAAGGCTCCTAAGTTAAATGAGAGGATTCTTTCTTCTCTCTCAAGAAAATCAGTTGCTGCACATCCTTGGCATGATCTTGAAATTGGACCTAAAGCTCCCCATATTTTCAACGTTGTTGTTGAGATCTCAAAGGGAAGCAAAGTCAAATATGAACTTGACAAGAAGACAGGACTCATAAAGGTTGATCGGATTTTGTATTCCTCAGTCGTCTATCCTCACAACTACGGTTTCATTCCTCGCACATTGTGTGAAGACAATGATCCCCTGGATGTCTTGGTTCTCATGCAGGAACCTGTTCATCCGGGCTGTTTTCTGCGAGCCAAAGCGATTGGAGTAATGCCCATGATTGACCAGGTACTGGAGAGGAAGATGATAAAATCATTGCAGTCTGCGCCGATGATCCAGCATATAACCATTACACTGACATCAAAGAGCTTCCCCCTCATCGCCTCACTGAGATTCGTCGGTTCTTTGAAGACTACAAGAAAAATGAGAACAAAGAGGTTGCAGTTGACCAGTTTTTGCCTGCTCCCAATGCTGCTACAGTTATCCAGTATTCCATGTAAGTCTTTGCATCTAAACACAACCAACAGGATCCTTTCCCGATCCTTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Pyrophosphatase

Protein Analysis

224

Amino Acids

25.24

Weight (kDa)

9.74

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyrophosphatase PF00719 56 - 150 3.8e-35 Inorganic pyrophosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 412
AclI AACGTT 1 cut(s) 165
AclWI GGATC 5 cut(s) 308, 448, 643, 654, 656
AcuI CTGAAG 1 cut(s) 30
AdeI CACNNNGTG 1 cut(s) 300
AfaI GTAC 1 cut(s) 411
AfiI CCNNNNNNNGG 1 cut(s) 412
AgsI TTSAA 4 cut(s) 44, 134, 163, 529
AjnI CCWGG 2 cut(s) 318, 405
AluBI AGCT 4 cut(s) 29, 38, 149, 489
AluI AGCT 4 cut(s) 29, 38, 149, 489
AlwI GGATC 5 cut(s) 308, 448, 643, 654, 656
AlwNI CAGNNNCTG 2 cut(s) 110, 412
ApeKI GCWGC 3 cut(s) 35, 110, 592
Asp700I GAANNNNTTC 1 cut(s) 348
AspLEI GCGC 1 cut(s) 448
AspS9I GGNCC 1 cut(s) 140
AsuC2I CCSGG 1 cut(s) 357
AvaII GGWCC 1 cut(s) 140
BamHI GGATCC 1 cut(s) 648
BbsI GAAGAC 3 cut(s) 224, 312, 536
BbvI GCAGC 3 cut(s) 47, 97, 579
BciT130I CCWGG 2 cut(s) 320, 407
BcnI CCSGG 1 cut(s) 357
BfmI CTRYAG 1 cut(s) 596
BglII AGATCT 1 cut(s) 177
BisI GCNGC 3 cut(s) 36, 111, 593
BlsI GCNGC 3 cut(s) 37, 112, 594
Bme1390I CCNGG 3 cut(s) 320, 357, 407
Bme18I GGWCC 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 140
BmiI GGNNCC 3 cut(s) 60, 345, 650
BmrFI CCNGG 3 cut(s) 320, 357, 407
BmsI GCATC 1 cut(s) 637
BpiI GAAGAC 3 cut(s) 224, 312, 536
BpmI CTGGAG 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 79
BpuMI CCSGG 1 cut(s) 357
BsaJI CCNNGG 2 cut(s) 119, 318
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse1I ACTGG 3 cut(s) 417, 570, 606
Bse3DI GCAATG 1 cut(s) 434
BseBI CCWGG 2 cut(s) 320, 407
BseDI CCNNGG 2 cut(s) 119, 318
BseGI GGATG 3 cut(s) 115, 328, 352
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMI GCAATG 1 cut(s) 434
BseMII CTCAG 2 cut(s) 270, 500
BseNI ACTGG 3 cut(s) 417, 570, 606
BseXI GCAGC 3 cut(s) 47, 97, 579
BsgI GTGCAG 1 cut(s) 96
BsiSI CCGG 1 cut(s) 356
BslI CCNNNNNNNGG 1 cut(s) 412
Bsp143I GATC 8 cut(s) 13, 127, 177, 238, 313, 453, 648, 659
BspCNI CTCAG 2 cut(s) 269, 501
BspLI GGNNCC 3 cut(s) 60, 345, 650
BspPI GGATC 5 cut(s) 308, 448, 643, 654, 656
BsrDI GCAATG 1 cut(s) 434
BsrI ACTGG 3 cut(s) 417, 570, 606
BssECI CCNNGG 2 cut(s) 119, 318
BssMI GATC 8 cut(s) 13, 127, 177, 238, 313, 453, 648, 659
BssT1I CCWWGG 1 cut(s) 119
Bst2UI CCWGG 2 cut(s) 320, 407
Bst4CI ACNGT 2 cut(s) 281, 600
BstC8I GCNNGC 2 cut(s) 372, 581
BstDEI CTNAG 3 cut(s) 63, 256, 509
BstF5I GGATG 3 cut(s) 115, 328, 352
BstHHI GCGC 1 cut(s) 448
BstKTI GATC 8 cut(s) 16, 130, 180, 241, 316, 456, 651, 662
BstMBI GATC 8 cut(s) 13, 127, 177, 238, 313, 453, 648, 659
BstMWI GCNNNNNNNGC 3 cut(s) 35, 445, 589
BstNI CCWGG 2 cut(s) 320, 407
BstSCI CCNGG 3 cut(s) 318, 355, 405
BstSFI CTRYAG 1 cut(s) 596
BstV1I GCAGC 3 cut(s) 47, 97, 579
BstV2I GAAGAC 3 cut(s) 224, 312, 536
BstX2I RGATCY 2 cut(s) 177, 648
BstYI RGATCY 2 cut(s) 177, 648
BtgZI GCGATG 1 cut(s) 484
BtsCI GGATG 3 cut(s) 115, 328, 352
BtsIMutI CAGTG 2 cut(s) 473, 506
Cac8I GCNNGC 2 cut(s) 372, 581
CaiI CAGNNNCTG 2 cut(s) 110, 412
CfoI GCGC 1 cut(s) 448
Cfr13I GGNCC 1 cut(s) 140
CsiI ACCWGGT 1 cut(s) 405
Csp6I GTAC 1 cut(s) 410
CviAII CATG 4 cut(s) 125, 337, 397, 615
CviJI RGCY 8 cut(s) 5, 29, 38, 59, 149, 360, 374, 489
CviKI_1 RGCY 8 cut(s) 5, 29, 38, 59, 149, 360, 374, 489
CviQI GTAC 1 cut(s) 410
DdeI CTNAG 3 cut(s) 63, 256, 509
DpnI GATC 8 cut(s) 15, 129, 179, 240, 315, 455, 650, 661
DpnII GATC 8 cut(s) 13, 127, 177, 238, 313, 453, 648, 659
DraIII CACNNNGTG 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 119
Eco47I GGWCC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 30
EcoRII CCWGG 2 cut(s) 318, 405
EcoT14I CCWWGG 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 119
FaeI CATG 4 cut(s) 128, 340, 400, 618
FaiI YATR 9 cut(s) 126, 156, 204, 230, 338, 398, 462, 464, 616
FatI CATG 4 cut(s) 124, 336, 396, 614
Fnu4HI GCNGC 3 cut(s) 36, 111, 593
FokI GGATG 3 cut(s) 102, 335, 339
Fsp4HI GCNGC 3 cut(s) 36, 111, 593
GlaI GCGC 1 cut(s) 447
GluI GCNGC 3 cut(s) 36, 111, 593
GsuI CTGGAG 1 cut(s) 434
HapII CCGG 1 cut(s) 356
HhaI GCGC 1 cut(s) 448
Hin1II CATG 4 cut(s) 128, 340, 400, 618
Hin6I GCGC 1 cut(s) 446
HinP1I GCGC 1 cut(s) 446
HincII GTYRAC 1 cut(s) 567
HindII GTYRAC 1 cut(s) 567
HinfI GANTC 3 cut(s) 79, 225, 513
HpaII CCGG 1 cut(s) 356
Hpy166II GTNNAC 1 cut(s) 567
Hpy188I TCNGA 2 cut(s) 10, 243
Hpy188III TCNNGA 4 cut(s) 44, 96, 131, 657
Hpy8I GTNNAC 1 cut(s) 567
Hpy99I CGWCG 1 cut(s) 521
HpyCH4III ACNGT 2 cut(s) 281, 600
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 5 cut(s) 113, 340, 439, 562, 628
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 445, 589
HpyF3I CTNAG 3 cut(s) 63, 256, 509
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 4 cut(s) 128, 340, 400, 618
HspAI GCGC 1 cut(s) 446
Kzo9I GATC 8 cut(s) 13, 127, 177, 238, 313, 453, 648, 659
LmnI GCTCC 3 cut(s) 64, 154, 588
Lsp1109I GCAGC 3 cut(s) 47, 97, 579
LweI GCATC 1 cut(s) 637
MabI ACCWGGT 1 cut(s) 405
MaeII ACGT 1 cut(s) 165
MalI GATC 8 cut(s) 15, 129, 179, 240, 315, 455, 650, 661
MboI GATC 8 cut(s) 13, 127, 177, 238, 313, 453, 648, 659
MboII GAAGA 7 cut(s) 23, 35, 78, 229, 317, 433, 541
MflI RGATCY 2 cut(s) 177, 648
MluCI AATT 1 cut(s) 135
MlyI GAGTC 1 cut(s) 219
MnlI CCTC 8 cut(s) 69, 265, 279, 300, 411, 506, 514, 549
MroXI GAANNNNTTC 1 cut(s) 348
MseI TTAA 1 cut(s) 68
MspI CCGG 1 cut(s) 356
MspR9I CCNGG 3 cut(s) 320, 357, 407
MvaI CCWGG 2 cut(s) 320, 407
MwoI GCNNNNNNNGC 3 cut(s) 35, 445, 589
NciI CCSGG 1 cut(s) 357
NdeII GATC 8 cut(s) 13, 127, 177, 238, 313, 453, 648, 659
NlaIII CATG 4 cut(s) 128, 340, 400, 618
NlaIV GGNNCC 3 cut(s) 60, 345, 650
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 2 cut(s) 79, 513
PflMI CCANNNNNTGG 1 cut(s) 412
PkrI GCNGC 3 cut(s) 37, 112, 594
PleI GAGTC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 219
Psp1406I AACGTT 1 cut(s) 165
Psp6I CCWGG 2 cut(s) 318, 405
PspGI CCWGG 2 cut(s) 318, 405
PspN4I GGNNCC 3 cut(s) 60, 345, 650
PspPI GGNCC 1 cut(s) 140
PstNI CAGNNNCTG 2 cut(s) 110, 412
PsuI RGATCY 2 cut(s) 177, 648
RsaI GTAC 1 cut(s) 411
RsaNI GTAC 1 cut(s) 410
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 3 cut(s) 36, 111, 593
Sau3AI GATC 8 cut(s) 13, 127, 177, 238, 313, 453, 648, 659
Sau96I GGNCC 1 cut(s) 140
SchI GAGTC 1 cut(s) 219
ScrFI CCNGG 3 cut(s) 320, 357, 407
SexAI ACCWGGT 1 cut(s) 405
SfaNI GCATC 1 cut(s) 637
SfcI CTRYAG 1 cut(s) 596
SinI GGWCC 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
Sse9I AATT 1 cut(s) 135
StyD4I CCNGG 3 cut(s) 318, 355, 405
StyI CCWWGG 1 cut(s) 119
TaaI ACNGT 2 cut(s) 281, 600
TaiI ACGT 1 cut(s) 168
TasI AATT 1 cut(s) 135
TfiI GAWTC 2 cut(s) 79, 513
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 2 cut(s) 480, 513
TseI GCWGC 3 cut(s) 35, 110, 592
TspDTI ATGAA 3 cut(s) 219, 274, 341
TspRI CASTG 2 cut(s) 480, 513
Van91I CCANNNNNTGG 1 cut(s) 412
VpaK11BI GGWCC 1 cut(s) 140
XmnI GAANNNNTTC 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.