pycom01g11640
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Reverse (-)
12665173 .. 12666836
1664 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11640.2

Sequence Viewer

Length: 1041 bp
ATGTCTGGAAGTTCGAGCCCTTCGATATTCCTGCATTCTTCCCAGAAGTTCATGAGAAGGAGTGGTTCTTCTTCACCCGGCCCAAATACAAGGACACCAACAGCACTCGCCGCGACCGGCTCACGCATAAAGGCTATTACAAGATCACAGGAGATGAGCGGGTCGATCAGGGCTGAAGAATCCAAAGCTGTGATTGGGAAGAAGATTATTCTGACCTTCCACGAGGGTCGTGCACCAAAAGCAAAGAAGTCCGATTGGGTAATCCATGAGTATTATTGTACAAAAACTGAGGTGGGTTCTAAACCCACCAAGCAGATGGACTTAGTCCTCTGCCGCCTGAAGAACAGGTCTCCTAGTTATAAGAAGCCGAAGGGTGATCCAACCCGCGGTGAATCACCTGATTCAGGTGCAAACCCGGAAGATGATCAAGCTGCTGCAAGTGATGTGATTGCAGGGCCAGTGGAACATCTGGGATGCAAAGAGCTAGGAGATGTTAATAGCTCCGAGTCTCCAGACGGTTCTTGTCCTATAAACTGGAAAGACATTTTGACCTTTGTTTATGGTGATGATGAAACTGGTGGCTGGAAGGTCTCGGATGTTGATGATCCAGCTGCATCTGATATGTTCGAAGAGTTGTGTTCTGCGTTGGGAGAGATTCCGAATTCAACCTCTCAGCCGCCGCAACAGCCGCAGCTGCTGCAGACATCAGAACCATATCAGCCACCGCATCCACATCAAACACAGGATTACTACCCCTCCACACATCAGCCACCTGAGTATATTATTTCAACCAATGATCCCAATGAACCAGTTAGCAAACCTAATGGTGTTCAAGATCTAGCTACAGATGAAATGATTCCAGAGGATTGTTTTCATCCAGATGAATTTATGGGTCTGCCGTTTGATCCGTCACAAGATTACTTGCTGCCGTCACCAATGAACATGGAACTGGGAGATGGTGTGCATCCCAATAACTGTATTGGATGCACTGATGAGTTGCGATCTCTAGATGAATGGAGATTTAAACACTTTTCCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

347

Amino Acids

37.99

Weight (kDa)

4.94

Isoelectric Point (pI)

57.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 360
AccBSI CCGCTC 1 cut(s) 159
AccII CGCG 2 cut(s) 113, 387
AciI CCGC 9 cut(s) 111, 159, 334, 385, 387, 677, 680, 689, 725
AclWI GGATC 4 cut(s) 371, 599, 791, 899
AcsI RAATTY 2 cut(s) 661, 884
AcuI CTGAAG 2 cut(s) 195, 359
AfaI GTAC 1 cut(s) 280
AfiI CCNNNNNNNGG 2 cut(s) 386, 404
AgsI TTSAA 3 cut(s) 666, 789, 833
AluBI AGCT 7 cut(s) 188, 431, 484, 501, 611, 694, 842
AluI AGCT 7 cut(s) 188, 431, 484, 501, 611, 694, 842
Alw21I GWGCWC 1 cut(s) 235
Alw26I GTCTC 3 cut(s) 354, 513, 595
Alw44I GTGCAC 1 cut(s) 231
AlwI GGATC 4 cut(s) 371, 599, 791, 899
AlwNI CAGNNNCTG 1 cut(s) 697
AoxI GGCC 2 cut(s) 79, 455
ApaLI GTGCAC 1 cut(s) 231
ApeKI GCWGC 7 cut(s) 431, 434, 611, 691, 694, 697, 925
ApoI RAATTY 2 cut(s) 661, 884
Asp700I GAANNNNTTC 1 cut(s) 855
AspS9I GGNCC 2 cut(s) 80, 455
AsuC2I CCSGG 2 cut(s) 78, 416
AsuHPI GGTGA 6 cut(s) 66, 386, 387, 401, 575, 924
AsuII TTCGAA 1 cut(s) 627
BaeGI GKGCMC 1 cut(s) 235
BanII GRGCYC 1 cut(s) 20
BauI CACGAG 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 235
BbvI GCAGC 7 cut(s) 418, 421, 598, 681, 684, 703, 912
BccI CCATC 2 cut(s) 310, 950
BceAI ACGGC 2 cut(s) 883, 913
BcgI CGANNNNNNTGC 4 cut(s) 13, 47, 212, 246
BclI TGATCA 1 cut(s) 424
BcnI CCSGG 2 cut(s) 78, 416
BcoDI GTCTC 3 cut(s) 354, 513, 595
BfaI CTAG 4 cut(s) 354, 485, 839, 1007
BfmI CTRYAG 2 cut(s) 698, 843
BglII AGATCT 1 cut(s) 835
Bme1390I CCNGG 2 cut(s) 78, 416
BmgT120I GGNCC 2 cut(s) 80, 455
BmrFI CCNGG 2 cut(s) 78, 416
BmrI ACTGGG 1 cut(s) 959
BmsI GCATC 5 cut(s) 464, 623, 736, 973, 974
BmuI ACTGGG 1 cut(s) 959
BpmI CTGGAG 1 cut(s) 495
Bpu14I TTCGAA 1 cut(s) 627
BpuMI CCSGG 2 cut(s) 78, 416
BsaI GGTCTC 2 cut(s) 354, 595
BsaJI CCNNGG 1 cut(s) 385
BsaXI ACNNNNNCTCC 4 cut(s) 740, 770, 945, 975
Bsc4I CCNNNNNNNGG 2 cut(s) 386, 404
Bse118I RCCGGY 1 cut(s) 116
Bse1I ACTGG 5 cut(s) 458, 539, 580, 809, 954
BseDI CCNNGG 1 cut(s) 385
BseGI GGATG 6 cut(s) 479, 601, 727, 874, 964, 989
BseLI CCNNNNNNNGG 2 cut(s) 386, 404
BseMII CTCAG 3 cut(s) 279, 686, 765
BseNI ACTGG 5 cut(s) 458, 539, 580, 809, 954
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 7 cut(s) 418, 421, 598, 681, 684, 703, 912
Bsh1236I CGCG 2 cut(s) 113, 387
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 2 cut(s) 81, 457
BsiEI CGRYCG 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 235
BsiSI CCGG 3 cut(s) 78, 117, 416
BslI CCNNNNNNNGG 2 cut(s) 386, 404
BsmAI GTCTC 3 cut(s) 354, 513, 595
BsmI GAATGC 1 cut(s) 34
BsnI GGCC 2 cut(s) 81, 457
Bso31I GGTCTC 2 cut(s) 354, 595
Bsp119I TTCGAA 1 cut(s) 627
Bsp1286I GDGCHC 2 cut(s) 20, 235
Bsp1407I TGTACA 1 cut(s) 278
Bsp143I GATC 9 cut(s) 143, 165, 376, 424, 604, 796, 835, 904, 1001
BspACI CCGC 9 cut(s) 111, 159, 334, 385, 387, 677, 680, 689, 725
BspANI GGCC 2 cut(s) 81, 457
BspCNI CTCAG 3 cut(s) 280, 685, 766
BspFNI CGCG 2 cut(s) 113, 387
BspHI TCATGA 1 cut(s) 51
BspMAI CTGCAG 1 cut(s) 702
BspPI GGATC 4 cut(s) 371, 599, 791, 899
BspT104I TTCGAA 1 cut(s) 627
BspTNI GGTCTC 2 cut(s) 354, 595
BsrBI CCGCTC 1 cut(s) 159
BsrFI RCCGGY 1 cut(s) 116
BsrGI TGTACA 1 cut(s) 278
BsrI ACTGG 5 cut(s) 458, 539, 580, 809, 954
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 1 cut(s) 385
BssMI GATC 9 cut(s) 143, 165, 376, 424, 604, 796, 835, 904, 1001
BssSI CACGAG 1 cut(s) 221
Bst2BI CACGAG 1 cut(s) 221
Bst4CI ACNGT 2 cut(s) 518, 977
Bst6I CTCTTC 1 cut(s) 624
BstAPI GCANNNNNTGC 1 cut(s) 697
BstAUI TGTACA 1 cut(s) 278
BstBI TTCGAA 1 cut(s) 627
BstDEI CTNAG 4 cut(s) 288, 322, 672, 774
BstDSI CCRYGG 1 cut(s) 385
BstENI CCTNNNNNAGG 1 cut(s) 402
BstF5I GGATG 6 cut(s) 479, 601, 727, 874, 964, 989
BstFNI CGCG 2 cut(s) 113, 387
BstKTI GATC 9 cut(s) 146, 168, 379, 427, 607, 799, 838, 907, 1004
BstMAI GTCTC 3 cut(s) 354, 513, 595
BstMBI GATC 9 cut(s) 143, 165, 376, 424, 604, 796, 835, 904, 1001
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 6 cut(s) 110, 239, 685, 688, 694, 697
BstSCI CCNGG 2 cut(s) 76, 414
BstSFI CTRYAG 2 cut(s) 698, 843
BstSLI GKGCMC 1 cut(s) 235
BstUI CGCG 2 cut(s) 113, 387
BstV1I GCAGC 7 cut(s) 418, 421, 598, 681, 684, 703, 912
BstX2I RGATCY 1 cut(s) 835
BstXI CCANNNNNNTGG 1 cut(s) 316
BstYI RGATCY 1 cut(s) 835
BsuRI GGCC 2 cut(s) 81, 457
BtgI CCRYGG 1 cut(s) 385
BtsCI GGATG 6 cut(s) 479, 601, 727, 874, 964, 989
BtsIMutI CAGTG 2 cut(s) 465, 987
CaiI CAGNNNCTG 1 cut(s) 697
CciI TCATGA 1 cut(s) 51
Cfr10I RCCGGY 1 cut(s) 116
Cfr13I GGNCC 2 cut(s) 80, 455
Cfr42I CCGCGG 1 cut(s) 388
Csp6I GTAC 1 cut(s) 279
CviAII CATG 3 cut(s) 52, 266, 943
CviQI GTAC 1 cut(s) 279
DdeI CTNAG 4 cut(s) 288, 322, 672, 774
DpnI GATC 9 cut(s) 145, 167, 378, 426, 606, 798, 837, 906, 1003
DpnII GATC 9 cut(s) 143, 165, 376, 424, 604, 796, 835, 904, 1001
DraI TTTAAA 1 cut(s) 1024
Eam1104I CTCTTC 1 cut(s) 624
EarI CTCTTC 1 cut(s) 624
Eco24I GRGCYC 1 cut(s) 20
Eco31I GGTCTC 2 cut(s) 354, 595
Eco57I CTGAAG 2 cut(s) 195, 359
EcoNI CCTNNNNNAGG 1 cut(s) 402
EcoRI GAATTC 1 cut(s) 661
EcoT38I GRGCYC 1 cut(s) 20
FaeI CATG 3 cut(s) 55, 269, 946
FatI CATG 3 cut(s) 51, 265, 942
FauI CCCGC 2 cut(s) 152, 392
FbaI TGATCA 1 cut(s) 424
FokI GGATG 6 cut(s) 486, 608, 714, 861, 951, 996
FriOI GRGCYC 1 cut(s) 20
FspBI CTAG 4 cut(s) 354, 485, 839, 1007
GsuI CTGGAG 1 cut(s) 495
HaeIII GGCC 2 cut(s) 81, 457
HapII CCGG 3 cut(s) 78, 117, 416
Hin1II CATG 3 cut(s) 55, 269, 946
HinfI GANTC 6 cut(s) 179, 392, 401, 506, 655, 856
HpaII CCGG 3 cut(s) 78, 117, 416
HphI GGTGA 6 cut(s) 66, 386, 387, 401, 575, 924
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 7 cut(s) 213, 253, 505, 595, 619, 660, 709
Hpy188III TCNNGA 7 cut(s) 6, 52, 512, 833, 860, 878, 1007
Hpy8I GTNNAC 1 cut(s) 233
HpyAV CCTTC 5 cut(s) 30, 51, 226, 364, 580
HpyCH4III ACNGT 2 cut(s) 518, 977
HpyF10VI GCNNNNNNNGC 6 cut(s) 110, 239, 685, 688, 694, 697
HpyF3I CTNAG 4 cut(s) 288, 322, 672, 774
Hsp92II CATG 3 cut(s) 55, 269, 946
Ksp22I TGATCA 1 cut(s) 424
KspI CCGCGG 1 cut(s) 388
Kzo9I GATC 9 cut(s) 143, 165, 376, 424, 604, 796, 835, 904, 1001
LmnI GCTCC 1 cut(s) 506
Lsp1109I GCAGC 7 cut(s) 418, 421, 598, 681, 684, 703, 912
LweI GCATC 5 cut(s) 464, 623, 736, 973, 974
MaeI CTAG 4 cut(s) 354, 485, 839, 1007
MaeIII GTNAC 2 cut(s) 909, 930
MalI GATC 9 cut(s) 145, 167, 378, 426, 606, 798, 837, 906, 1003
MbiI CCGCTC 1 cut(s) 159
MboI GATC 9 cut(s) 143, 165, 376, 424, 604, 796, 835, 904, 1001
MboII GAAGA 9 cut(s) 30, 60, 63, 188, 211, 214, 352, 431, 641
MflI RGATCY 1 cut(s) 835
MhlI GDGCHC 2 cut(s) 20, 235
MluCI AATT 2 cut(s) 661, 884
MlyI GAGTC 1 cut(s) 515
MmeI TCCRAC 1 cut(s) 404
MnlI CCTC 6 cut(s) 217, 283, 338, 679, 766, 856
MroXI GAANNNNTTC 1 cut(s) 855
MseI TTAA 2 cut(s) 495, 1023
MslI CAYNNNNRTG 1 cut(s) 879
MspA1I CMGCKG 3 cut(s) 387, 611, 694
MspI CCGG 3 cut(s) 78, 117, 416
MspR9I CCNGG 2 cut(s) 78, 416
Mva1269I GAATGC 1 cut(s) 34
MvnI CGCG 2 cut(s) 113, 387
MwoI GCNNNNNNNGC 6 cut(s) 110, 239, 685, 688, 694, 697
NciI CCSGG 2 cut(s) 78, 416
NdeII GATC 9 cut(s) 143, 165, 376, 424, 604, 796, 835, 904, 1001
NlaIII CATG 3 cut(s) 55, 269, 946
NmuCI GTSAC 2 cut(s) 909, 930
NspV TTCGAA 1 cut(s) 627
PagI TCATGA 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PctI GAATGC 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 855
PfeI GAWTC 5 cut(s) 179, 392, 401, 655, 856
PflFI GACNNNGTC 1 cut(s) 323
PleI GAGTC 1 cut(s) 514
PpsI GAGTC 1 cut(s) 514
PsiI TTATAA 1 cut(s) 360
PspPI GGNCC 2 cut(s) 80, 455
PstI CTGCAG 1 cut(s) 702
PstNI CAGNNNCTG 1 cut(s) 697
PsuI RGATCY 1 cut(s) 835
PsyI GACNNNGTC 1 cut(s) 323
PvuII CAGCTG 2 cut(s) 611, 694
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
RseI CAYNNNNRTG 1 cut(s) 879
SacII CCGCGG 1 cut(s) 388
SaqAI TTAA 2 cut(s) 495, 1023
Sau3AI GATC 9 cut(s) 143, 165, 376, 424, 604, 796, 835, 904, 1001
Sau96I GGNCC 2 cut(s) 80, 455
SchI GAGTC 1 cut(s) 515
ScrFI CCNGG 2 cut(s) 78, 416
SduI GDGCHC 2 cut(s) 20, 235
SfaNI GCATC 5 cut(s) 464, 623, 736, 973, 974
SfcI CTRYAG 2 cut(s) 698, 843
Sfr303I CCGCGG 1 cut(s) 388
SfuI TTCGAA 1 cut(s) 627
SgrBI CCGCGG 1 cut(s) 388
SmiMI CAYNNNNRTG 1 cut(s) 879
Sse9I AATT 2 cut(s) 661, 884
SsiI CCGC 9 cut(s) 111, 159, 334, 385, 387, 677, 680, 689, 725
SspMI CTAG 4 cut(s) 354, 485, 839, 1007
StyD4I CCNGG 2 cut(s) 76, 414
TaaI ACNGT 2 cut(s) 518, 977
TaqI TCGA 4 cut(s) 14, 23, 164, 627
TasI AATT 2 cut(s) 661, 884
TatI WGTACW 1 cut(s) 278
TauI GCSGC 5 cut(s) 113, 336, 679, 682, 691
TfiI GAWTC 5 cut(s) 179, 392, 401, 655, 856
Tru1I TTAA 2 cut(s) 495, 1023
Tru9I TTAA 2 cut(s) 495, 1023
TscAI CASTG 2 cut(s) 465, 994
TseFI GTSAC 2 cut(s) 909, 930
TseI GCWGC 7 cut(s) 431, 434, 611, 691, 694, 697, 925
Tsp45I GTSAC 2 cut(s) 909, 930
TspDTI ATGAA 8 cut(s) 40, 585, 819, 863, 864, 897, 953, 1026
TspGWI ACGGA 1 cut(s) 897
TspRI CASTG 2 cut(s) 465, 994
Tth111I GACNNNGTC 1 cut(s) 323
VneI GTGCAC 1 cut(s) 231
XagI CCTNNNNNAGG 1 cut(s) 402
XapI RAATTY 2 cut(s) 661, 884
XbaI TCTAGA 1 cut(s) 1006
XcmI CCANNNNNNNNNTGG 1 cut(s) 313
XmnI GAANNNNTTC 1 cut(s) 855
XspI CTAG 4 cut(s) 354, 485, 839, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.