Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

12828530 .. 12829140

Gene Structure 611 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAGCCGGACGCAATTTCCTATTCAGGGATGTTGTAAATGTTATCGAATAGACGATGCCACTAAGATTTTTAGTGAAATGCAGCTCAATGGATATATCCCTGATACCATTGTTTATAATTCTCTGATCTTACCCAACAGCTTCGGCTTTTCTCCTAATCTTACCCAACCTCTTAATCTCAACCATTTATGTACATCCTATGAAAGGAAAAGAGGTAAAACCGGGCATAGTGCAGCCACTGGAACTCTAAACGATGATGCTATAAGGTTCTCCAAGTTAAAGTTAGCTTTCAGATTTCAATATGTTTTCTATTCTTCTCCAGCAGGAGGCAACTCACATATATACACATTTAGTCCTTGTACCACAAGGAATATTAAAGATATTAAAAAGAGTTATACCCAAACTAGGAAATACAATCACATTCCTATTCTTCTAATGTTGACTCACGCCAACACTCTCCCTCAAGTTGGTCTTCTAGTAAAGACCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

164

Amino Acids

18.44

Weight (kDa)

9.62

Isoelectric Point (pI)

34.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	8 - 43	1.1e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	117
AciI	CCGC	1 cut(s)	486
AfaI	GTAC	2 cut(s)	193, 361
AfiI	CCNNNNNNNGG	5 cut(s)	26, 204, 326, 405, 467
AgsI	TTSAA	1 cut(s)	299
AluBI	AGCT	3 cut(s)	85, 141, 287
AluI	AGCT	3 cut(s)	85, 141, 287
AlwNI	CAGNNNCTG	1 cut(s)	239
ApeKI	GCWGC	2 cut(s)	82, 233
AsuC2I	CCSGG	1 cut(s)	223
BaeI	ACNNNNGTAYC	2 cut(s)	96, 129
BbsI	GAAGAC	1 cut(s)	464
BbvI	GCAGC	2 cut(s)	94, 245
BcnI	CCSGG	1 cut(s)	223
BfaI	CTAG	2 cut(s)	405, 476
BisI	GCNGC	2 cut(s)	83, 234
BlsI	GCNGC	2 cut(s)	84, 235
Bme1390I	CCNGG	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	2 cut(s)	46, 247
BpiI	GAAGAC	1 cut(s)	464
BpmI	CTGGAG	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	447
BpuMI	CCSGG	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	5 cut(s)	26, 204, 326, 405, 467
Bse1I	ACTGG	1 cut(s)	244
BseGI	GGATG	2 cut(s)	35, 194
BseLI	CCNNNNNNNGG	5 cut(s)	26, 204, 326, 405, 467
BseNI	ACTGG	1 cut(s)	244
BseXI	GCAGC	2 cut(s)	94, 245
BsgI	GTGCAG	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	7, 222
BslI	CCNNNNNNNGG	5 cut(s)	26, 204, 326, 405, 467
Bsp1407I	TGTACA	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	126
BspACI	CCGC	1 cut(s)	486
BsrGI	TGTACA	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	244
BssMI	GATC	1 cut(s)	126
BstAUI	TGTACA	1 cut(s)	191
BstDEI	CTNAG	1 cut(s)	63
BstENI	CCTNNNNNAGG	1 cut(s)	202
BstF5I	GGATG	2 cut(s)	35, 194
BstKTI	GATC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	94, 245
BstV2I	GAAGAC	1 cut(s)	464
BtsCI	GGATG	2 cut(s)	35, 194
BtsIMutI	CAGTG	1 cut(s)	237
CaiI	CAGNNNCTG	1 cut(s)	239
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	2 cut(s)	192, 360
CviAII	CATG	1 cut(s)	489
CviJI	RGCY	6 cut(s)	6, 85, 141, 147, 236, 287
CviKI_1	RGCY	6 cut(s)	6, 85, 141, 147, 236, 287
CviQI	GTAC	2 cut(s)	192, 360
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
EcoNI	CCTNNNNNAGG	1 cut(s)	202
FaeI	CATG	1 cut(s)	492
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FatI	CATG	1 cut(s)	488
Fnu4HI	GCNGC	2 cut(s)	83, 234
FokI	GGATG	2 cut(s)	42, 181
Fsp4HI	GCNGC	2 cut(s)	83, 234
FspBI	CTAG	2 cut(s)	405, 476
GluI	GCNGC	2 cut(s)	83, 234
GsuI	CTGGAG	1 cut(s)	303
HapII	CCGG	2 cut(s)	7, 222
HgaI	GACGC	1 cut(s)	19
Hin1II	CATG	1 cut(s)	492
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HinfI	GANTC	1 cut(s)	442
HpaII	CCGG	2 cut(s)	7, 222
Hpy166II	GTNNAC	1 cut(s)	441
Hpy188I	TCNGA	2 cut(s)	126, 293
Hpy8I	GTNNAC	1 cut(s)	441
HpyCH4V	TGCA	2 cut(s)	82, 233
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	492
Kzo9I	GATC	1 cut(s)	126
LpnPI	CCDG	7 cut(s)	11, 20, 114, 225, 235, 309, 333
Lsp1109I	GCAGC	2 cut(s)	94, 245
LweI	GCATC	2 cut(s)	46, 247
MaeI	CTAG	2 cut(s)	405, 476
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MboII	GAAGA	3 cut(s)	306, 422, 464
MluCI	AATT	2 cut(s)	14, 118
MlyI	GAGTC	1 cut(s)	436
MnlI	CCTC	4 cut(s)	180, 206, 320, 471
MseI	TTAA	4 cut(s)	174, 278, 375, 384
MspI	CCGG	2 cut(s)	7, 222
MspR9I	CCNGG	1 cut(s)	223
NciI	CCSGG	1 cut(s)	223
NdeII	GATC	1 cut(s)	126
NlaIII	CATG	1 cut(s)	492
PkrI	GCNGC	2 cut(s)	84, 235
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
PsiI	TTATAA	1 cut(s)	117
PstNI	CAGNNNCTG	1 cut(s)	239
RsaI	GTAC	2 cut(s)	193, 361
RsaNI	GTAC	2 cut(s)	192, 360
SaqAI	TTAA	4 cut(s)	174, 278, 375, 384
SatI	GCNGC	2 cut(s)	83, 234
Sau3AI	GATC	1 cut(s)	126
SchI	GAGTC	1 cut(s)	436
ScrFI	CCNGG	1 cut(s)	223
SetI	ASST	6 cut(s)	87, 143, 172, 217, 269, 289
SfaNI	GCATC	2 cut(s)	46, 247
SmlI	CTYRAG	1 cut(s)	462
SmoI	CTYRAG	1 cut(s)	462
Sse9I	AATT	2 cut(s)	14, 118
SsiI	CCGC	1 cut(s)	486
SspI	AATATT	1 cut(s)	373
SspMI	CTAG	2 cut(s)	405, 476
StyD4I	CCNGG	1 cut(s)	221
TaqI	TCGA	1 cut(s)	46
TasI	AATT	2 cut(s)	14, 118
TatI	WGTACW	1 cut(s)	191
Tru1I	TTAA	4 cut(s)	174, 278, 375, 384
Tru9I	TTAA	4 cut(s)	174, 278, 375, 384
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	2 cut(s)	82, 233
TspDTI	ATGAA	1 cut(s)	216
TspRI	CASTG	1 cut(s)	244
XagI	CCTNNNNNAGG	1 cut(s)	202
XspI	CTAG	2 cut(s)	405, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.