Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

13324784 .. 13326703

Gene Structure 1920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAGTGTAAAGTGTATGACGTGACACGGCGAGAAACCTTTACAAACTTATCGAATATCTGGGCAAAGGAAGTAGAGACGTACTCCACTAATCCTGAGTGTATCAAAATTCTAATAGGGAATAAAGTTGACAAGGAAAATGAGAGGGCTGTAACTCGAGAAGAGGGCTTGGCTCTTGCACAGGAATCTCACACTGAAGATGCTGGAGGTGCCAAGTTTACTAGAAAGTGGATCTGTAGAAGTGAAGAGACACATATTGAAGCAGAAACAAGAGGATCGGTTTCCTTGCAGCGGCGATTGCTGCTCTCAATGACAACACTAGAAGACGTTGGTTCAAGAGTTGGTGTAATGACAATTGGTGCCCGGGTGCTCTTCAAAGCCATTGCCATCACTCCCAAAACAATTTTGGGAACAATGGGTATAGTAAAGGTTCTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005794 GO:0008092 GO:0012505 GO:0017022 GO:0030742 GO:0032029 GO:0032036 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0080115

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

147

Amino Acids

16.3

Weight (kDa)

8.82

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	5 - 64	6.4e-11	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	209, 359
AciI	CCGC	1 cut(s)	292
AclWI	GGATC	2 cut(s)	239, 283
AcsI	RAATTY	1 cut(s)	108
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	291
AgsI	TTSAA	3 cut(s)	260, 336, 376
AjiI	CACGTC	1 cut(s)	22
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	2 cut(s)	71, 242
AlwI	GGATC	2 cut(s)	239, 283
Ama87I	CYCGRG	2 cut(s)	156, 363
ApeKI	GCWGC	2 cut(s)	289, 301
ApoI	RAATTY	1 cut(s)	108
AsuC2I	CCSGG	2 cut(s)	364, 365
AvaI	CYCGRG	2 cut(s)	156, 363
BaeGI	GKGCMC	1 cut(s)	364
BanI	GGYRCC	2 cut(s)	209, 359
BbsI	GAAGAC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	2 cut(s)	288, 301
BccI	CCATC	1 cut(s)	395
BceAI	ACGGC	1 cut(s)	44
BcnI	CCSGG	2 cut(s)	364, 365
BcoDI	GTCTC	2 cut(s)	71, 242
BfaI	CTAG	2 cut(s)	222, 320
BfmI	CTRYAG	1 cut(s)	235
BisI	GCNGC	3 cut(s)	290, 293, 302
BlsI	GCNGC	3 cut(s)	291, 294, 303
Bme1390I	CCNGG	2 cut(s)	364, 365
BmeT110I	CYCGRG	2 cut(s)	156, 363
BmgBI	CACGTC	1 cut(s)	22
BmiI	GGNNCC	2 cut(s)	211, 361
BmrFI	CCNGG	2 cut(s)	364, 365
BmsI	GCATC	1 cut(s)	190
BpiI	GAAGAC	1 cut(s)	330
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpmI	CTGGAG	1 cut(s)	225
BpuMI	CCSGG	2 cut(s)	364, 365
BsaJI	CCNNGG	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
Bse3DI	GCAATG	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	363
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	1 cut(s)	87
BseSI	GKGCMC	1 cut(s)	364
BseXI	GCAGC	2 cut(s)	288, 301
BshNI	GGYRCC	2 cut(s)	209, 359
BsiHKAI	GWGCWC	1 cut(s)	372
BsiHKCI	CYCGRG	2 cut(s)	156, 363
BsiSI	CCGG	1 cut(s)	364
BslI	CCNNNNNNNGG	1 cut(s)	291
BsmAI	GTCTC	2 cut(s)	71, 242
BsmBI	CGTCTC	1 cut(s)	71
BsoBI	CYCGRG	2 cut(s)	156, 363
Bsp1286I	GDGCHC	2 cut(s)	364, 372
Bsp143I	GATC	2 cut(s)	231, 275
BspACI	CCGC	1 cut(s)	292
BspCNI	CTCAG	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	211, 361
BspPI	GGATC	2 cut(s)	239, 283
BspQI	GCTCTTC	1 cut(s)	377
BspT107I	GGYRCC	2 cut(s)	209, 359
BsrDI	GCAATG	1 cut(s)	381
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	2 cut(s)	231, 275
Bst6I	CTCTTC	3 cut(s)	156, 240, 377
BstDEI	CTNAG	1 cut(s)	96
BstKTI	GATC	2 cut(s)	234, 278
BstMAI	GTCTC	2 cut(s)	71, 242
BstMBI	GATC	2 cut(s)	231, 275
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 298, 301
BstSCI	CCNGG	2 cut(s)	362, 363
BstSFI	CTRYAG	1 cut(s)	235
BstSLI	GKGCMC	1 cut(s)	364
BstV1I	GCAGC	2 cut(s)	288, 301
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
BtrI	CACGTC	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	192
Cfr9I	CCCGGG	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	82
CviJI	RGCY	4 cut(s)	149, 168, 173, 380
CviKI_1	RGCY	4 cut(s)	149, 168, 173, 380
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	2 cut(s)	233, 277
DpnII	GATC	2 cut(s)	231, 275
Eam1104I	CTCTTC	3 cut(s)	156, 240, 377
EarI	CTCTTC	3 cut(s)	156, 240, 377
Eco57I	CTGAAG	1 cut(s)	216
Eco88I	CYCGRG	2 cut(s)	156, 363
Esp3I	CGTCTC	1 cut(s)	71
FaiI	YATR	3 cut(s)	18, 255, 422
Fnu4HI	GCNGC	3 cut(s)	290, 293, 302
Fsp4HI	GCNGC	3 cut(s)	290, 293, 302
FspBI	CTAG	2 cut(s)	222, 320
GluI	GCNGC	3 cut(s)	290, 293, 302
GsuI	CTGGAG	1 cut(s)	225
HapII	CCGG	1 cut(s)	364
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	1 cut(s)	364
Hpy166II	GTNNAC	2 cut(s)	130, 219
Hpy188III	TCNNGA	3 cut(s)	95, 158, 336
Hpy8I	GTNNAC	2 cut(s)	130, 219
HpyCH4IV	ACGT	3 cut(s)	21, 80, 327
HpyCH4V	TGCA	2 cut(s)	179, 289
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 298, 301
HpyF3I	CTNAG	1 cut(s)	96
HpySE526I	ACGT	3 cut(s)	21, 80, 327
Kzo9I	GATC	2 cut(s)	231, 275
LguI	GCTCTTC	1 cut(s)	377
LpnPI	CCDG	6 cut(s)	46, 108, 167, 189, 377, 419
Lsp1109I	GCAGC	2 cut(s)	288, 301
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	2 cut(s)	222, 320
MaeII	ACGT	3 cut(s)	21, 80, 327
MaeIII	GTNAC	2 cut(s)	22, 151
MalI	GATC	2 cut(s)	233, 277
MboI	GATC	2 cut(s)	231, 275
MboII	GAAGA	5 cut(s)	173, 209, 257, 335, 364
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	2 cut(s)	364, 372
MluCI	AATT	3 cut(s)	108, 354, 402
MnlI	CCTC	4 cut(s)	138, 157, 200, 266
MspA1I	CMGCKG	1 cut(s)	292
MspI	CCGG	1 cut(s)	364
MspR9I	CCNGG	2 cut(s)	364, 365
MunI	CAATTG	1 cut(s)	354
MwoI	GCNNNNNNNGC	3 cut(s)	209, 298, 301
NciI	CCSGG	2 cut(s)	364, 365
NdeII	GATC	2 cut(s)	231, 275
NlaIV	GGNNCC	2 cut(s)	211, 361
NmuCI	GTSAC	1 cut(s)	22
PaeR7I	CTCGAG	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	3 cut(s)	291, 294, 303
PspN4I	GGNNCC	2 cut(s)	211, 361
PsuI	RGATCY	1 cut(s)	231
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	377
SatI	GCNGC	3 cut(s)	290, 293, 302
Sau3AI	GATC	2 cut(s)	231, 275
ScrFI	CCNGG	2 cut(s)	364, 365
SduI	GDGCHC	2 cut(s)	364, 372
SetI	ASST	6 cut(s)	24, 41, 83, 211, 330, 432
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	235
Sfr274I	CTCGAG	1 cut(s)	156
SlaI	CTCGAG	1 cut(s)	156
SmaI	CCCGGG	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
Sse9I	AATT	3 cut(s)	108, 354, 402
SsiI	CCGC	1 cut(s)	292
SspMI	CTAG	2 cut(s)	222, 320
StyD4I	CCNGG	2 cut(s)	362, 363
TaiI	ACGT	3 cut(s)	24, 83, 330
TaqI	TCGA	2 cut(s)	53, 157
TasI	AATT	3 cut(s)	108, 354, 402
TauI	GCSGC	1 cut(s)	295
TfiI	GAWTC	1 cut(s)	185
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	2 cut(s)	289, 301
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	363
TspRI	CASTG	1 cut(s)	199
XapI	RAATTY	1 cut(s)	108
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403
XhoI	CTCGAG	1 cut(s)	156
XmaI	CCCGGG	1 cut(s)	363
XspI	CTAG	2 cut(s)	222, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.