pycom01g13420

VWA / Hh protein intein-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
13883148 .. 13884014
867 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 867 bp
ATGCACTCAATTTCAGAGATATCTGGGGGAACATTTTCTTTCATTGAGACAGAAGCTGTAATCCAGGATGCATTTGCACAATGCATTGGTGGGCTTTTGAGTGTCGTGGTGCAAGAGCTGCAGGTGGTAGTTGAGTGTGTGAACACAAGTCTCCGCCTTGGTTCAGTAAAAGCAGGAAGCTACCCAAGTCGTGTGATGGGTGATGGACGGAAGGGGGTTATTGATGTTGGAGATATGTATGCCGATGAAGAGAGGGATTTTCTGGTTTCAGTTAATGTCCCAACAGAGTCTTGTAGCAATCTCACCTCGTTGATAAAGGTGAGATGCATTTACAAGGATCCCTTGAATAAAGAAACGGCAACAATAGAAAGTGAAGAAGTTAGAATTGAGAGACCTGATGTAGCTCAGCAAGCAGTAGTGTCAATAGAAGTGGACAGGCAACGTAATAGGCTCCAGGCAGCCGAGGCAATGGCTCAAGCACGAGGAGCGGCTGAGCTGGGAGACTTAACTGGTGCAGTTTCAACCCTTGAAAATTGTCGAAGGGTATTGTCAGAGACCGTGTCAGCAAAATCCCAGGACCGCCTGTGTGTAGCATTGGATGCTGAGCTCAAGGAAATGCAAGAGAGGATGGCAAGCAGGCATGTGTACGAGGCATCTGGCAGAGCATACATCCTTTCAGGATTGAGCTCACACTCATGGCAACGAGCGACAGCAAGAGGTGACTCCACCGATGGTTCAAGTCTTGTTCAGGCCTATCAAACCCCATCAATGGTTGAGATGCTTACTCGATCTCAAGCTATGTTGTTGGGCAGTCCATCAGCCCAGCGGCTTGTCCGACCATTTTATTCACAACCAAAGCCGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

289

Amino Acids

31.41

Weight (kDa)

5.31

Isoelectric Point (pI)

50.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WAV3_C PF25243 144 - 214 1.5e-06 E3 ubiquitin-protein ligase WAV3-like, C-terminal domain
Vwaint PF14624 193 - 265 2.1e-21 VWA / Hh protein intein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
Acc36I ACCTGC 1 cut(s) 112
AccBSI CCGCTC 1 cut(s) 488
AciI CCGC 4 cut(s) 154, 488, 580, 826
AclWI GGATC 2 cut(s) 332, 345
AfaI GTAC 1 cut(s) 647
AfiI CCNNNNNNNGG 1 cut(s) 769
AgsI TTSAA 4 cut(s) 346, 522, 530, 738
AjnI CCWGG 3 cut(s) 63, 453, 573
AluBI AGCT 8 cut(s) 56, 118, 180, 404, 496, 607, 687, 797
AluI AGCT 8 cut(s) 56, 118, 180, 404, 496, 607, 687, 797
Alw21I GWGCWC 2 cut(s) 609, 689
Alw26I GTCTC 5 cut(s) 41, 155, 385, 495, 548
AlwI GGATC 2 cut(s) 332, 345
AlwNI CAGNNNCTG 1 cut(s) 56
AoxI GGCC 1 cut(s) 750
ApeKI GCWGC 2 cut(s) 118, 458
Asp700I GAANNNNTTC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 577
AsuHPI GGTGA 4 cut(s) 212, 295, 331, 731
AvaII GGWCC 1 cut(s) 577
BamHI GGATCC 1 cut(s) 337
BanII GRGCYC 2 cut(s) 609, 689
BauI CACGAG 1 cut(s) 480
Bbv12I GWGCWC 2 cut(s) 609, 689
BbvI GCAGC 2 cut(s) 105, 470
BccI CCATC 6 cut(s) 190, 197, 622, 725, 772, 823
BceAI ACGGC 1 cut(s) 372
BciT130I CCWGG 3 cut(s) 65, 455, 575
BcoDI GTCTC 5 cut(s) 41, 155, 385, 495, 548
BfmI CTRYAG 1 cut(s) 119
BfuAI ACCTGC 1 cut(s) 112
BisI GCNGC 4 cut(s) 119, 459, 489, 827
BlpI GCTNAGC 3 cut(s) 405, 492, 603
BlsI GCNGC 4 cut(s) 120, 460, 490, 828
Bme1390I CCNGG 3 cut(s) 65, 455, 575
Bme18I GGWCC 1 cut(s) 577
BmgT120I GGNCC 1 cut(s) 577
BmiI GGNNCC 2 cut(s) 339, 452
BmrFI CCNGG 3 cut(s) 65, 455, 575
BmsI GCATC 5 cut(s) 58, 314, 589, 662, 768
BpmI CTGGAG 1 cut(s) 437
Bpu1102I GCTNAGC 3 cut(s) 405, 492, 603
BpuEI CTTGAG 3 cut(s) 459, 593, 777
BsaI GGTCTC 2 cut(s) 385, 548
BsaJI CCNNGG 4 cut(s) 157, 462, 573, 860
Bsc4I CCNNNNNNNGG 1 cut(s) 769
Bse1I ACTGG 1 cut(s) 514
Bse3DI GCAATG 1 cut(s) 474
BseBI CCWGG 3 cut(s) 65, 455, 575
BseDI CCNNGG 4 cut(s) 157, 462, 573, 860
BseGI GGATG 4 cut(s) 73, 604, 633, 669
BseLI CCNNNNNNNGG 1 cut(s) 769
BseMI GCAATG 1 cut(s) 474
BseMII CTCAG 3 cut(s) 419, 483, 594
BseNI ACTGG 1 cut(s) 514
BseRI GAGGAG 1 cut(s) 498
BseXI GCAGC 2 cut(s) 105, 470
BseYI CCCAGC 2 cut(s) 496, 822
BsgI GTGCAG 1 cut(s) 534
BshFI GGCC 1 cut(s) 752
BsiHKAI GWGCWC 2 cut(s) 609, 689
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 1 cut(s) 769
BsmAI GTCTC 5 cut(s) 41, 155, 385, 495, 548
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 1 cut(s) 752
Bso31I GGTCTC 2 cut(s) 385, 548
Bsp1286I GDGCHC 2 cut(s) 609, 689
Bsp143I GATC 2 cut(s) 337, 788
Bsp1720I GCTNAGC 3 cut(s) 405, 492, 603
BspACI CCGC 4 cut(s) 154, 488, 580, 826
BspANI GGCC 1 cut(s) 752
BspCNI CTCAG 3 cut(s) 418, 484, 595
BspLI GGNNCC 2 cut(s) 339, 452
BspMAI CTGCAG 1 cut(s) 123
BspMI ACCTGC 1 cut(s) 112
BspPI GGATC 2 cut(s) 332, 345
BspTNI GGTCTC 2 cut(s) 385, 548
BsrBI CCGCTC 1 cut(s) 488
BsrDI GCAATG 1 cut(s) 474
BsrI ACTGG 1 cut(s) 514
BssECI CCNNGG 4 cut(s) 157, 462, 573, 860
BssMI GATC 2 cut(s) 337, 788
BssSI CACGAG 1 cut(s) 480
BssT1I CCWWGG 1 cut(s) 157
Bst2BI CACGAG 1 cut(s) 480
Bst2UI CCWGG 3 cut(s) 65, 455, 575
Bst4CI ACNGT 1 cut(s) 559
Bst6I CTCTTC 1 cut(s) 243
BstAPI GCANNNNNTGC 2 cut(s) 118, 599
BstC8I GCNNGC 3 cut(s) 411, 634, 638
BstDEI CTNAG 3 cut(s) 405, 492, 603
BstF5I GGATG 4 cut(s) 73, 604, 633, 669
BstKTI GATC 2 cut(s) 340, 791
BstMAI GTCTC 5 cut(s) 41, 155, 385, 495, 548
BstMBI GATC 2 cut(s) 337, 788
BstMWI GCNNNNNNNGC 5 cut(s) 118, 410, 464, 485, 599
BstNI CCWGG 3 cut(s) 65, 455, 575
BstNSI RCATGY 1 cut(s) 644
BstSCI CCNGG 3 cut(s) 63, 453, 573
BstSFI CTRYAG 1 cut(s) 119
BstV1I GCAGC 2 cut(s) 105, 470
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BsuRI GGCC 1 cut(s) 752
BtsCI GGATG 4 cut(s) 73, 604, 633, 669
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 3 cut(s) 411, 634, 638
CaiI CAGNNNCTG 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 577
Csp6I GTAC 1 cut(s) 646
CspCI CAANNNNNGTGG 2 cut(s) 411, 446
CviAII CATG 2 cut(s) 641, 696
CviQI GTAC 1 cut(s) 646
DdeI CTNAG 3 cut(s) 405, 492, 603
DpnI GATC 2 cut(s) 339, 790
DpnII GATC 2 cut(s) 337, 788
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
EciI GGCGGA 1 cut(s) 143
Ecl136II GAGCTC 2 cut(s) 607, 687
Eco130I CCWWGG 1 cut(s) 157
Eco147I AGGCCT 1 cut(s) 752
Eco24I GRGCYC 2 cut(s) 609, 689
Eco31I GGTCTC 2 cut(s) 385, 548
Eco32I GATATC 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 577
Eco53kI GAGCTC 2 cut(s) 607, 687
EcoICRI GAGCTC 2 cut(s) 607, 687
EcoRII CCWGG 3 cut(s) 63, 453, 573
EcoRV GATATC 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 157
EcoT22I ATGCAT 3 cut(s) 73, 86, 329
EcoT38I GRGCYC 2 cut(s) 609, 689
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 2 cut(s) 644, 699
FaiI YATR 6 cut(s) 236, 240, 642, 667, 697, 800
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FaqI GGGAC 1 cut(s) 263
FatI CATG 2 cut(s) 640, 695
Fnu4HI GCNGC 4 cut(s) 119, 459, 489, 827
FokI GGATG 4 cut(s) 80, 611, 640, 656
FriOI GRGCYC 2 cut(s) 609, 689
Fsp4HI GCNGC 4 cut(s) 119, 459, 489, 827
GluI GCNGC 4 cut(s) 119, 459, 489, 827
GsaI CCCAGC 2 cut(s) 500, 826
GsuI CTGGAG 1 cut(s) 437
HaeIII GGCC 1 cut(s) 752
Hin1II CATG 2 cut(s) 644, 699
HinfI GANTC 2 cut(s) 287, 722
HphI GGTGA 4 cut(s) 212, 295, 331, 731
Hpy166II GTNNAC 3 cut(s) 142, 433, 646
Hpy188I TCNGA 3 cut(s) 16, 553, 836
Hpy188III TCNNGA 1 cut(s) 678
Hpy8I GTNNAC 3 cut(s) 142, 433, 646
HpyAV CCTTC 2 cut(s) 205, 534
HpyCH4III ACNGT 1 cut(s) 559
HpyCH4IV ACGT 1 cut(s) 442
HpyCH4V TGCA 9 cut(s) 4, 71, 77, 84, 112, 121, 327, 515, 619
HpyF10VI GCNNNNNNNGC 5 cut(s) 118, 410, 464, 485, 599
HpyF3I CTNAG 3 cut(s) 405, 492, 603
HpySE526I ACGT 1 cut(s) 442
Hsp92II CATG 2 cut(s) 644, 699
Kzo9I GATC 2 cut(s) 337, 788
LmnI GCTCC 2 cut(s) 456, 485
Lsp1109I GCAGC 2 cut(s) 105, 470
LweI GCATC 5 cut(s) 58, 314, 589, 662, 768
MaeII ACGT 1 cut(s) 442
MaeIII GTNAC 1 cut(s) 719
MalI GATC 2 cut(s) 339, 790
MbiI CCGCTC 1 cut(s) 488
MboI GATC 2 cut(s) 337, 788
MboII GAAGA 2 cut(s) 260, 386
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 2 cut(s) 609, 689
MluCI AATT 3 cut(s) 9, 384, 532
MlyI GAGTC 2 cut(s) 296, 716
MmeI TCCRAC 2 cut(s) 208, 859
MnlI CCTC 8 cut(s) 246, 316, 457, 476, 618, 643, 710, 855
Mph1103I ATGCAT 3 cut(s) 73, 86, 329
MroXI GAANNNNTTC 1 cut(s) 34
MseI TTAA 2 cut(s) 273, 506
MslI CAYNNNNRTG 1 cut(s) 694
MspA1I CMGCKG 1 cut(s) 826
MspR9I CCNGG 3 cut(s) 65, 455, 575
MvaI CCWGG 3 cut(s) 65, 455, 575
MwoI GCNNNNNNNGC 5 cut(s) 118, 410, 464, 485, 599
NdeII GATC 2 cut(s) 337, 788
NlaIII CATG 2 cut(s) 644, 699
NlaIV GGNNCC 2 cut(s) 339, 452
NmeAIII GCCGAG 1 cut(s) 487
NmuCI GTSAC 1 cut(s) 719
NsiI ATGCAT 3 cut(s) 73, 86, 329
NspI RCATGY 1 cut(s) 644
PaqCI CACCTGC 1 cut(s) 112
PceI AGGCCT 1 cut(s) 752
PdmI GAANNNNTTC 1 cut(s) 34
PflFI GACNNNGTC 1 cut(s) 559
PfoI TCCNGGA 1 cut(s) 63
PkrI GCNGC 4 cut(s) 120, 460, 490, 828
PleI GAGTC 2 cut(s) 295, 716
PpsI GAGTC 2 cut(s) 295, 716
Psp124BI GAGCTC 2 cut(s) 609, 689
Psp6I CCWGG 3 cut(s) 63, 453, 573
PspFI CCCAGC 2 cut(s) 496, 822
PspGI CCWGG 3 cut(s) 63, 453, 573
PspN4I GGNNCC 2 cut(s) 339, 452
PspPI GGNCC 1 cut(s) 577
PstI CTGCAG 1 cut(s) 123
PstNI CAGNNNCTG 1 cut(s) 56
PsuI RGATCY 1 cut(s) 337
PsyI GACNNNGTC 1 cut(s) 559
RsaI GTAC 1 cut(s) 647
RsaNI GTAC 1 cut(s) 646
RseI CAYNNNNRTG 1 cut(s) 694
SacI GAGCTC 2 cut(s) 609, 689
SaqAI TTAA 2 cut(s) 273, 506
SatI GCNGC 4 cut(s) 119, 459, 489, 827
Sau3AI GATC 2 cut(s) 337, 788
Sau96I GGNCC 1 cut(s) 577
SchI GAGTC 2 cut(s) 296, 716
ScrFI CCNGG 3 cut(s) 65, 455, 575
SduI GDGCHC 2 cut(s) 609, 689
SfaNI GCATC 5 cut(s) 58, 314, 589, 662, 768
SfcI CTRYAG 1 cut(s) 119
SinI GGWCC 1 cut(s) 577
SmiMI CAYNNNNRTG 1 cut(s) 694
SmlI CTYRAG 3 cut(s) 474, 608, 792
SmoI CTYRAG 3 cut(s) 474, 608, 792
Sse9I AATT 3 cut(s) 9, 384, 532
SseBI AGGCCT 1 cut(s) 752
SsiI CCGC 4 cut(s) 154, 488, 580, 826
SstI GAGCTC 2 cut(s) 609, 689
StuI AGGCCT 1 cut(s) 752
StyD4I CCNGG 3 cut(s) 63, 453, 573
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 559
TaiI ACGT 1 cut(s) 445
TaqI TCGA 2 cut(s) 538, 787
TasI AATT 3 cut(s) 9, 384, 532
TauI GCSGC 2 cut(s) 491, 829
Tru1I TTAA 2 cut(s) 273, 506
Tru9I TTAA 2 cut(s) 273, 506
TseFI GTSAC 1 cut(s) 719
TseI GCWGC 2 cut(s) 118, 458
Tsp45I GTSAC 1 cut(s) 719
TspDTI ATGAA 2 cut(s) 31, 261
TspGWI ACGGA 1 cut(s) 223
Tth111I GACNNNGTC 1 cut(s) 559
VpaK11BI GGWCC 1 cut(s) 577
XceI RCATGY 1 cut(s) 644
XmnI GAANNNNTTC 1 cut(s) 34
Zsp2I ATGCAT 3 cut(s) 73, 86, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.