Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

14025167 .. 14027974

Gene Structure 2808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCTTCCTCTCTCGCTTTCAAACCATTCCTCGGAGCTCCAACGACCGATGGGCTTTCTGGGTTGTGCTCCTCCTCCGATCTTCGGACCCTCTCGTCCTCCTCCGTTCAATTTGTGATCCGCCAGAGAAACCCCAAGAAACTCCAGGTGCAGGCAGCTGGGAATACTACCGGGAATCATTTTCGTGTTACAACTTTTGGGGAATCTCATGGTGGTGGTGTTGGTTGTGTAATTGATGGATGCCCTCCTCGTATGCCCCTCTCCGTAGAAGATTTGCAAGGTGACCTTGACAGAAGGAGGCCAGGTCAGAGTCGAATTACTACCCCTAGGAAGGAAACTGACACGTGCCGAATACTTTCAGGAGTTCATGAAGGAGTGACAACTGGGACACCAATTCTTGTGCTTGTACCAAATACTGATCAGAGAGGACGTGATTATGATGAAATGTCGGTAGCTTATAGGCCTTCACATGCTGATCGAACTTATGACCAAAAGTATGGTATCAGATCAGTGCAGGGTGGTGGTAGATCTTCTGCTAGAGAAACAATTGGAAGAGTTGCAGCTGGAGCCCTTGCCAAGAAAATCCTTAAGGCTTTCTCGGGAACTGAGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004107 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010181 GO:0016053 GO:0016829 GO:0016835 GO:0016838 GO:0019438 GO:0019752 GO:0031974 GO:0031981 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0048037 GO:0050662 GO:0070013 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Chorismate_synt

Protein Analysis

205

Amino Acids

21.81

Weight (kDa)

9.64

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chorismate_synt	PF01264	61 - 199	2.6e-60	Chorismate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	94
AciI	CCGC	1 cut(s)	121
AclWI	GGATC	1 cut(s)	112
AcvI	CACGTG	1 cut(s)	345
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	4 cut(s)	32, 84, 151, 331
AflII	CTTAAG	1 cut(s)	587
AflIII	ACRYGT	1 cut(s)	342
AgsI	TTSAA	2 cut(s)	22, 110
AjiI	CACGTC	1 cut(s)	431
AjnI	CCWGG	2 cut(s)	144, 301
AluBI	AGCT	4 cut(s)	38, 158, 455, 563
AluI	AGCT	4 cut(s)	38, 158, 455, 563
Alw21I	GWGCWC	2 cut(s)	40, 71
AlwI	GGATC	1 cut(s)	112
Ama87I	CYCGRG	1 cut(s)	598
AoxI	GGCC	2 cut(s)	299, 461
ApeKI	GCWGC	2 cut(s)	155, 560
Asp700I	GAANNNNTTC	1 cut(s)	355
AspA2I	CCTAGG	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	87
AsuC2I	CCSGG	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	293
AvaI	CYCGRG	1 cut(s)	598
AvaII	GGWCC	1 cut(s)	87
AvrII	CCTAGG	1 cut(s)	326
BanII	GRGCYC	2 cut(s)	40, 571
BbrPI	CACGTG	1 cut(s)	345
Bbv12I	GWGCWC	2 cut(s)	40, 71
BbvI	GCAGC	2 cut(s)	167, 572
BccI	CCATC	2 cut(s)	44, 230
BciT130I	CCWGG	2 cut(s)	146, 303
BclI	TGATCA	1 cut(s)	418
BcnI	CCSGG	1 cut(s)	172
BfaI	CTAG	3 cut(s)	327, 537, 613
BfrI	CTTAAG	1 cut(s)	587
BglII	AGATCT	1 cut(s)	527
BisI	GCNGC	2 cut(s)	156, 561
BlnI	CCTAGG	1 cut(s)	326
BlsI	GCNGC	2 cut(s)	157, 562
Bme1390I	CCNGG	3 cut(s)	146, 172, 303
Bme18I	GGWCC	1 cut(s)	87
BmeT110I	CYCGRG	1 cut(s)	598
BmgBI	CACGTC	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	2 cut(s)	89, 568
BmrFI	CCNGG	3 cut(s)	146, 172, 303
BmrI	ACTGGG	1 cut(s)	393
BmsI	GCATC	1 cut(s)	230
BmuI	ACTGGG	1 cut(s)	393
BpmI	CTGGAG	2 cut(s)	128, 585
BpuMI	CCSGG	1 cut(s)	172
BsaAI	YACGTR	1 cut(s)	345
BsaJI	CCNNGG	2 cut(s)	31, 326
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 84, 151, 331
Bse1I	ACTGG	1 cut(s)	388
BseBI	CCWGG	2 cut(s)	146, 303
BseDI	CCNNGG	2 cut(s)	31, 326
BseGI	GGATG	1 cut(s)	245
BseLI	CCNNNNNNNGG	4 cut(s)	32, 84, 151, 331
BseMII	CTCAG	1 cut(s)	597
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	4 cut(s)	61, 64, 91, 237
BseXI	GCAGC	2 cut(s)	167, 572
BseYI	CCCAGC	1 cut(s)	158
BsgI	GTGCAG	2 cut(s)	170, 533
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	2 cut(s)	301, 463
BsiEI	CGRYCG	1 cut(s)	48
BsiHKAI	GWGCWC	2 cut(s)	40, 71
BsiHKCI	CYCGRG	1 cut(s)	598
BsiSI	CCGG	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	4 cut(s)	32, 84, 151, 331
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	2 cut(s)	301, 463
BsoBI	CYCGRG	1 cut(s)	598
Bsp1286I	GDGCHC	3 cut(s)	40, 71, 571
Bsp143I	GATC	6 cut(s)	79, 117, 418, 475, 506, 527
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	2 cut(s)	301, 463
BspCNI	CTCAG	1 cut(s)	598
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	2 cut(s)	89, 568
BspPI	GGATC	1 cut(s)	112
BspTI	CTTAAG	1 cut(s)	587
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	2 cut(s)	31, 326
BssMI	GATC	6 cut(s)	79, 117, 418, 475, 506, 527
BssT1I	CCWWGG	1 cut(s)	326
Bst2UI	CCWGG	2 cut(s)	146, 303
Bst6I	CTCTTC	1 cut(s)	547
BstAFI	CTTAAG	1 cut(s)	587
BstBAI	YACGTR	1 cut(s)	345
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	606
BstEII	GGTNACC	1 cut(s)	281
BstF5I	GGATG	1 cut(s)	245
BstKTI	GATC	6 cut(s)	82, 120, 421, 478, 509, 530
BstMBI	GATC	6 cut(s)	79, 117, 418, 475, 506, 527
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	1 cut(s)	566
BstNI	CCWGG	2 cut(s)	146, 303
BstNSI	RCATGY	1 cut(s)	473
BstPI	GGTNACC	1 cut(s)	281
BstSCI	CCNGG	3 cut(s)	144, 170, 301
BstV1I	GCAGC	2 cut(s)	167, 572
BstX2I	RGATCY	1 cut(s)	527
BstXI	CCANNNNNNTGG	1 cut(s)	497
BstYI	RGATCY	1 cut(s)	527
BsuRI	GGCC	2 cut(s)	301, 463
BtrI	CACGTC	1 cut(s)	431
BtsCI	GGATG	1 cut(s)	245
BtsIMutI	CAGTG	1 cut(s)	516
Cac8I	GCNNGC	1 cut(s)	153
CciI	TCATGA	1 cut(s)	367
Cfr13I	GGNCC	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	3 cut(s)	209, 368, 470
CviQI	GTAC	1 cut(s)	407
DdeI	CTNAG	1 cut(s)	606
DpnI	GATC	6 cut(s)	81, 119, 420, 477, 508, 529
DpnII	GATC	6 cut(s)	79, 117, 418, 475, 506, 527
DrdI	GACNNNNNNGTC	1 cut(s)	94
DseDI	GACNNNNNNGTC	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	547
EarI	CTCTTC	1 cut(s)	547
EciI	GGCGGA	1 cut(s)	110
Ecl136II	GAGCTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	326
Eco147I	AGGCCT	1 cut(s)	463
Eco24I	GRGCYC	2 cut(s)	40, 571
Eco47I	GGWCC	1 cut(s)	87
Eco53kI	GAGCTC	1 cut(s)	38
Eco72I	CACGTG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	598
Eco91I	GGTNACC	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	38
EcoO65I	GGTNACC	1 cut(s)	281
EcoRII	CCWGG	2 cut(s)	144, 301
EcoT14I	CCWWGG	1 cut(s)	326
EcoT38I	GRGCYC	2 cut(s)	40, 571
ErhI	CCWWGG	1 cut(s)	326
FaeI	CATG	3 cut(s)	212, 371, 473
FaiI	YATR	8 cut(s)	210, 254, 369, 438, 459, 471, 486, 498
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	3 cut(s)	208, 367, 469
FbaI	TGATCA	1 cut(s)	418
Fnu4HI	GCNGC	2 cut(s)	156, 561
FokI	GGATG	1 cut(s)	252
FriOI	GRGCYC	2 cut(s)	40, 571
Fsp4HI	GCNGC	2 cut(s)	156, 561
FspBI	CTAG	3 cut(s)	327, 537, 613
GluI	GCNGC	2 cut(s)	156, 561
GsaI	CCCAGC	1 cut(s)	162
GsuI	CTGGAG	2 cut(s)	128, 585
HaeIII	GGCC	2 cut(s)	301, 463
HapII	CCGG	1 cut(s)	171
Hin1II	CATG	3 cut(s)	212, 371, 473
HinfI	GANTC	3 cut(s)	175, 203, 310
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	1 cut(s)	293
Hpy188I	TCNGA	6 cut(s)	35, 79, 87, 309, 423, 506
Hpy188III	TCNNGA	3 cut(s)	360, 368, 600
HpyAV	CCTTC	4 cut(s)	288, 325, 365, 474
HpyCH4IV	ACGT	2 cut(s)	344, 430
HpyCH4V	TGCA	4 cut(s)	151, 277, 514, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	566
HpyF3I	CTNAG	1 cut(s)	606
HpySE526I	ACGT	2 cut(s)	344, 430
Hsp92II	CATG	3 cut(s)	212, 371, 473
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	6 cut(s)	79, 117, 418, 475, 506, 527
LmnI	GCTCC	4 cut(s)	35, 43, 74, 566
Lsp1109I	GCAGC	2 cut(s)	167, 572
LweI	GCATC	1 cut(s)	230
MaeI	CTAG	3 cut(s)	327, 537, 613
MaeII	ACGT	2 cut(s)	344, 430
MaeIII	GTNAC	3 cut(s)	187, 281, 376
MalI	GATC	6 cut(s)	81, 119, 420, 477, 508, 529
MboI	GATC	6 cut(s)	79, 117, 418, 475, 506, 527
MboII	GAAGA	4 cut(s)	74, 281, 522, 564
MfeI	CAATTG	1 cut(s)	546
MflI	RGATCY	1 cut(s)	527
MhlI	GDGCHC	3 cut(s)	40, 71, 571
MluCI	AATT	5 cut(s)	110, 231, 315, 393, 546
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	1 cut(s)	65
MroXI	GAANNNNTTC	1 cut(s)	355
MseI	TTAA	1 cut(s)	588
MslI	CAYNNNNRTG	2 cut(s)	183, 213
MspA1I	CMGCKG	2 cut(s)	158, 563
MspCI	CTTAAG	1 cut(s)	587
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	3 cut(s)	146, 172, 303
MunI	CAATTG	1 cut(s)	546
MvaI	CCWGG	2 cut(s)	146, 303
MwoI	GCNNNNNNNGC	1 cut(s)	566
NciI	CCSGG	1 cut(s)	172
NdeII	GATC	6 cut(s)	79, 117, 418, 475, 506, 527
NlaIII	CATG	3 cut(s)	212, 371, 473
NlaIV	GGNNCC	2 cut(s)	89, 568
NmuCI	GTSAC	2 cut(s)	281, 376
NspI	RCATGY	1 cut(s)	473
PagI	TCATGA	1 cut(s)	367
PceI	AGGCCT	1 cut(s)	463
PdmI	GAANNNNTTC	1 cut(s)	355
PfeI	GAWTC	2 cut(s)	175, 203
PkrI	GCNGC	2 cut(s)	157, 562
PleI	GAGTC	1 cut(s)	318
PmaCI	CACGTG	1 cut(s)	345
PmlI	CACGTG	1 cut(s)	345
PpsI	GAGTC	1 cut(s)	318
Ppu21I	YACGTR	1 cut(s)	345
Psp124BI	GAGCTC	1 cut(s)	40
Psp6I	CCWGG	2 cut(s)	144, 301
PspCI	CACGTG	1 cut(s)	345
PspEI	GGTNACC	1 cut(s)	281
PspFI	CCCAGC	1 cut(s)	158
PspGI	CCWGG	2 cut(s)	144, 301
PspN4I	GGNNCC	2 cut(s)	89, 568
PspPI	GGNCC	1 cut(s)	87
PsuI	RGATCY	1 cut(s)	527
PvuII	CAGCTG	2 cut(s)	158, 563
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
RseI	CAYNNNNRTG	2 cut(s)	183, 213
SacI	GAGCTC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	588
SatI	GCNGC	2 cut(s)	156, 561
Sau3AI	GATC	6 cut(s)	79, 117, 418, 475, 506, 527
Sau96I	GGNCC	1 cut(s)	87
SchI	GAGTC	1 cut(s)	319
ScrFI	CCNGG	3 cut(s)	146, 172, 303
SduI	GDGCHC	3 cut(s)	40, 71, 571
SfaNI	GCATC	1 cut(s)	230
SinI	GGWCC	1 cut(s)	87
SmiMI	CAYNNNNRTG	2 cut(s)	183, 213
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
Sse9I	AATT	5 cut(s)	110, 231, 315, 393, 546
SseBI	AGGCCT	1 cut(s)	463
SsiI	CCGC	1 cut(s)	121
SspMI	CTAG	3 cut(s)	327, 537, 613
SstI	GAGCTC	1 cut(s)	40
StuI	AGGCCT	1 cut(s)	463
StyD4I	CCNGG	3 cut(s)	144, 170, 301
StyI	CCWWGG	1 cut(s)	326
TaiI	ACGT	2 cut(s)	347, 433
TaqI	TCGA	2 cut(s)	313, 478
TaqII	GACCGA	1 cut(s)	62
TasI	AATT	5 cut(s)	110, 231, 315, 393, 546
TfiI	GAWTC	2 cut(s)	175, 203
Tru1I	TTAA	1 cut(s)	588
Tru9I	TTAA	1 cut(s)	588
TscAI	CASTG	1 cut(s)	516
TseFI	GTSAC	2 cut(s)	281, 376
TseI	GCWGC	2 cut(s)	155, 560
Tsp45I	GTSAC	2 cut(s)	281, 376
TspDTI	ATGAA	3 cut(s)	356, 384, 456
TspGWI	ACGGA	2 cut(s)	94, 253
TspRI	CASTG	1 cut(s)	516
Vha464I	CTTAAG	1 cut(s)	587
VpaK11BI	GGWCC	1 cut(s)	87
XceI	RCATGY	1 cut(s)	473
XmaJI	CCTAGG	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	355
XspI	CTAG	3 cut(s)	327, 537, 613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.