Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

14037912 .. 14039543

Gene Structure 1632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAACGCTGCCGTTGATGCTGTCAGAGTGAAAGGGGAATCTGTTGGTGGTGTTGTCACGTGCATTGTTAGAAATTGCCCACCGGGGCTTGGTTCGCCAGTCTTTGATAAACTTGAAGCAGAATTGGCTAAAGCTGCTATGTCAATACCTGCAACAAAGGGATTTGAAATTGGAAGTGGATTTGCAGGTACCTTTTTAACTGGGAGTGAACATAATGATGAGTTCTATTTGGATGATCAAGGAAAAATCAGGACAAGAACAAATCGCTCTGGTGGGATACAGGGAGGACTATCCAATGGGGAAATCATAAACATGAGGATAGCTTTGAAGCCAACAGCTACAATTGGAAAGAAGCAGAATACAGTGACTAGAGATAAAAGAGAGATAGAGCTTAGAGCCCTTGATTGCTTTGATCCTTGTGTTGTTCCGCGAGCTGTGCCGATTGTGGAAGCTGCAATAGCCCTTGCACTCGTGGACCAACTAATGGCTGATTTTGCTCAGTGTCACATATTTCCTATCAATCCCGACCTACAAGACCCTGTGCGGCAGCCATTGGTTGAAGCAATGGAGGCAGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004107 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010181 GO:0016053 GO:0016829 GO:0016835 GO:0016838 GO:0019438 GO:0019752 GO:0031974 GO:0031981 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0048037 GO:0050662 GO:0070013 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Chorismate_synt

Protein Analysis

194

Amino Acids

20.56

Weight (kDa)

5.26

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chorismate_synt	PF01264	1 - 162	2.4e-58	Chorismate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	157, 176
Acc65I	GGTACC	1 cut(s)	188
AccB1I	GGYRCC	1 cut(s)	188
AccB7I	CCANNNNNTGG	1 cut(s)	484
AccII	CGCG	1 cut(s)	430
AciI	CCGC	2 cut(s)	428, 544
AclWI	GGATC	1 cut(s)	407
AcvI	CACGTG	1 cut(s)	60
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	2 cut(s)	89, 484
AgsI	TTSAA	4 cut(s)	116, 167, 328, 560
AluBI	AGCT	7 cut(s)	134, 323, 338, 391, 434, 452, 575
AluI	AGCT	7 cut(s)	134, 323, 338, 391, 434, 452, 575
AlwI	GGATC	1 cut(s)	407
ApeKI	GCWGC	6 cut(s)	8, 134, 452, 547, 572, 575
Asp718I	GGTACC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	475
AsuC2I	CCSGG	1 cut(s)	84
AvaII	GGWCC	1 cut(s)	475
BanI	GGYRCC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	400
BauI	CACGAG	1 cut(s)	470
BbrPI	CACGTG	1 cut(s)	60
BbvI	GCAGC	4 cut(s)	121, 439, 559, 562
BciVI	GTATCC	1 cut(s)	270
BclI	TGATCA	1 cut(s)	235
BcnI	CCSGG	1 cut(s)	84
BfaI	CTAG	1 cut(s)	369
BfuAI	ACCTGC	2 cut(s)	157, 176
BfuI	GTATCC	1 cut(s)	270
BisI	GCNGC	7 cut(s)	9, 135, 453, 545, 548, 573, 576
BlsI	GCNGC	7 cut(s)	10, 136, 454, 546, 549, 574, 577
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	1 cut(s)	475
BmgT120I	GGNCC	1 cut(s)	475
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	84
BmrI	ACTGGG	1 cut(s)	210
BmsI	GCATC	1 cut(s)	7
BmuI	ACTGGG	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	84
BsaAI	YACGTR	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 484
Bse1I	ACTGG	2 cut(s)	98, 205
Bse3DI	GCAATG	1 cut(s)	570
BseDI	CCNNGG	1 cut(s)	83
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	2 cut(s)	89, 484
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	1 cut(s)	512
BseNI	ACTGG	2 cut(s)	98, 205
BseXI	GCAGC	4 cut(s)	121, 439, 559, 562
Bsh1236I	CGCG	1 cut(s)	430
BshNI	GGYRCC	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	83
BslI	CCNNNNNNNGG	2 cut(s)	89, 484
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp143I	GATC	2 cut(s)	235, 412
BspACI	CCGC	2 cut(s)	428, 544
BspCNI	CTCAG	1 cut(s)	511
BspFNI	CGCG	1 cut(s)	430
BspLI	GGNNCC	1 cut(s)	190
BspMI	ACCTGC	2 cut(s)	157, 176
BspPI	GGATC	1 cut(s)	407
BspT107I	GGYRCC	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	570
BsrI	ACTGG	2 cut(s)	98, 205
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	2 cut(s)	235, 412
BssSI	CACGAG	1 cut(s)	470
Bst2BI	CACGAG	1 cut(s)	470
Bst4CI	ACNGT	1 cut(s)	364
BstBAI	YACGTR	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	3 cut(s)	392, 498, 579
BstF5I	GGATG	1 cut(s)	238
BstFNI	CGCG	1 cut(s)	430
BstKTI	GATC	2 cut(s)	238, 415
BstMBI	GATC	2 cut(s)	235, 412
BstMWI	GCNNNNNNNGC	8 cut(s)	17, 94, 125, 134, 436, 458, 494, 569
BstSCI	CCNGG	1 cut(s)	82
BstUI	CGCG	1 cut(s)	430
BstV1I	GCAGC	4 cut(s)	121, 439, 559, 562
BsuI	GTATCC	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	2 cut(s)	369, 506
BveI	ACCTGC	2 cut(s)	157, 176
Cac8I	GCNNGC	1 cut(s)	432
Cfr13I	GGNCC	1 cut(s)	475
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	1 cut(s)	313
CviQI	GTAC	1 cut(s)	189
DdeI	CTNAG	3 cut(s)	392, 498, 579
DpnI	GATC	2 cut(s)	237, 414
DpnII	GATC	2 cut(s)	235, 412
Eco24I	GRGCYC	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	475
Eco72I	CACGTG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	400
FaeI	CATG	1 cut(s)	316
FaiI	YATR	5 cut(s)	140, 213, 308, 314, 509
FatI	CATG	1 cut(s)	312
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	7 cut(s)	9, 135, 453, 545, 548, 573, 576
FokI	GGATG	1 cut(s)	245
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	7 cut(s)	9, 135, 453, 545, 548, 573, 576
FspBI	CTAG	1 cut(s)	369
GluI	GCNGC	7 cut(s)	9, 135, 453, 545, 548, 573, 576
HapII	CCGG	1 cut(s)	83
Hin1II	CATG	1 cut(s)	316
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	1 cut(s)	83
Hpy166II	GTNNAC	2 cut(s)	209, 475
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	2 cut(s)	250, 524
Hpy8I	GTNNAC	2 cut(s)	209, 475
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	5 cut(s)	63, 152, 185, 455, 467
HpyF10VI	GCNNNNNNNGC	8 cut(s)	17, 94, 125, 134, 436, 458, 494, 569
HpyF3I	CTNAG	3 cut(s)	392, 498, 579
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	1 cut(s)	316
KpnI	GGTACC	1 cut(s)	192
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	235, 412
LpnPI	CCDG	9 cut(s)	96, 111, 162, 171, 186, 235, 255, 266, 552
Lsp1109I	GCAGC	4 cut(s)	121, 439, 559, 562
LweI	GCATC	1 cut(s)	7
MaeI	CTAG	1 cut(s)	369
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	3 cut(s)	55, 364, 503
MalI	GATC	2 cut(s)	237, 414
MboI	GATC	2 cut(s)	235, 412
MfeI	CAATTG	1 cut(s)	342
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	4 cut(s)	73, 122, 168, 342
MnlI	CCTC	3 cut(s)	278, 309, 562
MseI	TTAA	1 cut(s)	197
MslI	CAYNNNNRTG	2 cut(s)	216, 311
MspA1I	CMGCKG	1 cut(s)	575
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	84
MunI	CAATTG	1 cut(s)	342
MvnI	CGCG	1 cut(s)	430
MwoI	GCNNNNNNNGC	8 cut(s)	17, 94, 125, 134, 436, 458, 494, 569
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	2 cut(s)	235, 412
NlaIII	CATG	1 cut(s)	316
NlaIV	GGNNCC	1 cut(s)	190
NmuCI	GTSAC	3 cut(s)	55, 364, 503
PfeI	GAWTC	1 cut(s)	38
PflMI	CCANNNNNTGG	1 cut(s)	484
PkrI	GCNGC	7 cut(s)	10, 136, 454, 546, 549, 574, 577
PmaCI	CACGTG	1 cut(s)	60
PmlI	CACGTG	1 cut(s)	60
Ppu21I	YACGTR	1 cut(s)	60
PspCI	CACGTG	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	475
PvuII	CAGCTG	1 cut(s)	575
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
RseI	CAYNNNNRTG	2 cut(s)	216, 311
SaqAI	TTAA	1 cut(s)	197
SatI	GCNGC	7 cut(s)	9, 135, 453, 545, 548, 573, 576
Sau3AI	GATC	2 cut(s)	235, 412
Sau96I	GGNCC	1 cut(s)	475
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	400
SfaNI	GCATC	1 cut(s)	7
SinI	GGWCC	1 cut(s)	475
SmiMI	CAYNNNNRTG	2 cut(s)	216, 311
Sse9I	AATT	4 cut(s)	73, 122, 168, 342
SsiI	CCGC	2 cut(s)	428, 544
SspMI	CTAG	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	1 cut(s)	62
TasI	AATT	4 cut(s)	73, 122, 168, 342
TauI	GCSGC	1 cut(s)	547
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TscAI	CASTG	2 cut(s)	369, 506
TseFI	GTSAC	3 cut(s)	55, 364, 503
TseI	GCWGC	6 cut(s)	8, 134, 452, 547, 572, 575
Tsp45I	GTSAC	3 cut(s)	55, 364, 503
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	369, 506
Van91I	CCANNNNNTGG	1 cut(s)	484
VpaK11BI	GGWCC	1 cut(s)	475
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.