pycom01g14310

TONNEAU 1a-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
14530241 .. 14530834
594 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 279 bp
ATGGACGACTACACGAGGGAGATGATGGACCTCAAGACTCTCGTCACTCGCACCCTCGAGAAGAAGGGCGTACTCGCCAAGATCGATCTACAATTTCAAATTCCCTTTTTTGCTGAGTTGAGAGCAAGTGTGTTTGAGGCAATTGAGGAGGAGGACAAGGTCATTGAGAAAGACGAAGGCTTGCCTCCGGCATTGCTTGGTAGCTGCAACGATCGCGCCAAACAGCTCCACGCTTCCCCTTCGGGTTCTTCTACTCATCCCACGCTTAAAGAAAATTAA

Protein Analysis

93

Amino Acids

10.33

Weight (kDa)

4.96

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 216
AcsI RAATTY 1 cut(s) 99
AfaI GTAC 1 cut(s) 72
AgsI TTSAA 1 cut(s) 98
AluBI AGCT 2 cut(s) 204, 226
AluI AGCT 2 cut(s) 204, 226
Ama87I CYCGRG 1 cut(s) 56
ApeKI GCWGC 1 cut(s) 204
ApoI RAATTY 1 cut(s) 99
AspLEI GCGC 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 56
AvaII GGWCC 1 cut(s) 28
BauI CACGAG 1 cut(s) 13
BbvI GCAGC 1 cut(s) 191
BccI CCATC 1 cut(s) 19
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 28
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 28
BoxI GACNNNNGTC 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 17
Bsa29I ATCGAT 1 cut(s) 84
Bse3DI GCAATG 1 cut(s) 191
BseCI ATCGAT 1 cut(s) 84
BseGI GGATG 1 cut(s) 256
BseMI GCAATG 1 cut(s) 191
BseMII CTCAG 1 cut(s) 105
BseRI GAGGAG 2 cut(s) 161, 164
BseXI GCAGC 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 216
Bsh1285I CGRYCG 1 cut(s) 214
BshVI ATCGAT 1 cut(s) 84
BsiEI CGRYCG 1 cut(s) 214
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 1 cut(s) 188
BsoBI CYCGRG 1 cut(s) 56
Bsp143I GATC 3 cut(s) 81, 85, 211
BspCNI CTCAG 1 cut(s) 106
BspDI ATCGAT 1 cut(s) 84
BspFNI CGCG 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 191
BssMI GATC 3 cut(s) 81, 85, 211
BssSI CACGAG 1 cut(s) 13
Bst2BI CACGAG 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 182
BstDEI CTNAG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 256
BstFNI CGCG 1 cut(s) 216
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 3 cut(s) 84, 88, 214
BstMBI GATC 3 cut(s) 81, 85, 211
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 1 cut(s) 213
BstPAI GACNNNNGTC 1 cut(s) 41
BstUI CGCG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 191
Bsu15I ATCGAT 1 cut(s) 84
BsuTUI ATCGAT 1 cut(s) 84
BtsCI GGATG 1 cut(s) 256
Cac8I GCNNGC 1 cut(s) 182
CfoI GCGC 1 cut(s) 218
Cfr13I GGNCC 1 cut(s) 28
ClaI ATCGAT 1 cut(s) 84
Csp6I GTAC 1 cut(s) 71
CviJI RGCY 3 cut(s) 180, 204, 226
CviKI_1 RGCY 3 cut(s) 180, 204, 226
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 1 cut(s) 114
DpnI GATC 3 cut(s) 83, 87, 213
DpnII GATC 3 cut(s) 81, 85, 211
Eco47I GGWCC 1 cut(s) 28
Eco88I CYCGRG 1 cut(s) 56
Fnu4HI GCNGC 1 cut(s) 205
FokI GGATG 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 205
GlaI GCGC 1 cut(s) 217
GluI GCNGC 1 cut(s) 205
HapII CCGG 1 cut(s) 188
HhaI GCGC 1 cut(s) 218
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HinfI GANTC 1 cut(s) 37
HpaII CCGG 1 cut(s) 188
Hpy188III TCNNGA 2 cut(s) 34, 58
HpyAV CCTTC 3 cut(s) 58, 170, 249
HpyCH4V TGCA 1 cut(s) 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 213
HpyF3I CTNAG 1 cut(s) 114
HspAI GCGC 1 cut(s) 216
Kzo9I GATC 3 cut(s) 81, 85, 211
LmnI GCTCC 1 cut(s) 231
LpnPI CCDG 1 cut(s) 201
Lsp1109I GCAGC 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 43
MalI GATC 3 cut(s) 83, 87, 213
MboI GATC 3 cut(s) 81, 85, 211
MboII GAAGA 2 cut(s) 73, 240
MfeI CAATTG 1 cut(s) 141
MluCI AATT 4 cut(s) 92, 99, 141, 274
MlyI GAGTC 1 cut(s) 31
MnlI CCTC 8 cut(s) 9, 41, 65, 130, 139, 142, 145, 195
MseI TTAA 2 cut(s) 267, 277
MspI CCGG 1 cut(s) 188
MunI CAATTG 1 cut(s) 141
MvnI CGCG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 213
NdeII GATC 3 cut(s) 81, 85, 211
NmuCI GTSAC 1 cut(s) 43
PaeR7I CTCGAG 1 cut(s) 56
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PflFI GACNNNGTC 1 cut(s) 158
PkrI GCNGC 1 cut(s) 206
Ple19I CGATCG 1 cut(s) 214
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PshAI GACNNNNGTC 1 cut(s) 41
PspPI GGNCC 1 cut(s) 28
PsyI GACNNNGTC 1 cut(s) 158
PvuI CGATCG 1 cut(s) 214
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SaqAI TTAA 2 cut(s) 267, 277
SatI GCNGC 1 cut(s) 205
Sau3AI GATC 3 cut(s) 81, 85, 211
Sau96I GGNCC 1 cut(s) 28
SchI GAGTC 1 cut(s) 31
SetI ASST 4 cut(s) 33, 162, 206, 228
Sfr274I CTCGAG 1 cut(s) 56
SinI GGWCC 1 cut(s) 28
SlaI CTCGAG 1 cut(s) 56
SmlI CTYRAG 2 cut(s) 32, 56
SmoI CTYRAG 2 cut(s) 32, 56
Sse9I AATT 4 cut(s) 92, 99, 141, 274
TaqI TCGA 2 cut(s) 57, 84
TasI AATT 4 cut(s) 92, 99, 141, 274
Tru1I TTAA 2 cut(s) 267, 277
Tru9I TTAA 2 cut(s) 267, 277
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 1 cut(s) 204
Tsp45I GTSAC 1 cut(s) 43
Tth111I GACNNNGTC 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 28
XapI RAATTY 1 cut(s) 99
XhoI CTCGAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.