pycom01g14460

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Reverse (-)
14611031 .. 14611875
845 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 486 bp
ATGTTTCTTAGTCTGATACTGCATCAAACTCCAGCTAAGTCCCTGAAACTAGTCCAGTTCTCCAACCTTCGGTTTCGGTTCCTTTTTTCAATCTCAGTTCGGTTTTTTACTTTTGTCCTTTTCTGTCACATATCGGTGAACCGTTCGATTTTTTTCGGTTTTTGGGTTTCCGGCCCACCCGTACCCGCGTGGACAGGCCAGTCGAGCGCAAAGCCAACACTCTCCTCCATCCAGCACTGCAATGCTACTGGGAGAGCGAAATATCCGCTGGCGTCTCTGCTGTCAACAGTTCAGCCTCTCCTACACTCCAAGGTCGACGAATCAGACGACTTCTTGCCGTGGCTGGAGCGGAAAGCCGGCGCCGAGCTTTCAATTGGGAAATCGGCGAACGGAACGTCTCTGTTTGCTTCAAAGAGCATAACAGCTGGAGACTGCGTTTTGAAGGTTCCGCACAGCGTGGACTTCAGATCCAATTGTGTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 map00310
Pfam Domains
Protein Families
Rubis-subs-bind SET

Protein Analysis

162

Amino Acids

17.78

Weight (kDa)

9.59

Isoelectric Point (pI)

28.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 199
AccB1I GGYRCC 1 cut(s) 359
AccBSI CCGCTC 1 cut(s) 349
AccI GTMKAC 1 cut(s) 315
AccII CGCG 1 cut(s) 188
AciI CCGC 4 cut(s) 186, 266, 349, 449
AclWI GGATC 1 cut(s) 462
AcuI CTGAAG 1 cut(s) 448
AcyI GRCGYC 2 cut(s) 272, 360
AdeI CACNNNGTG 1 cut(s) 457
AfaI GTAC 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 69
AgsI TTSAA 4 cut(s) 90, 372, 411, 442
AhlI ACTAGT 1 cut(s) 49
AluBI AGCT 3 cut(s) 35, 367, 425
AluI AGCT 3 cut(s) 35, 367, 425
Alw26I GTCTC 3 cut(s) 279, 402, 423
AlwI GGATC 1 cut(s) 462
AoxI GGCC 2 cut(s) 172, 196
ArsI GACNNNNNNTTYG 2 cut(s) 380, 412
AspLEI GCGC 2 cut(s) 209, 362
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 148
BanI GGYRCC 1 cut(s) 359
BccI CCATC 1 cut(s) 236
BceAI ACGGC 1 cut(s) 322
BcoDI GTCTC 3 cut(s) 279, 402, 423
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 1 cut(s) 50
BfoI RGCGCY 1 cut(s) 363
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 3 cut(s) 80, 361, 447
BmrI ACTGGG 1 cut(s) 258
BmsI GCATC 1 cut(s) 31
BmuI ACTGGG 1 cut(s) 258
BpmI CTGGAG 3 cut(s) 15, 365, 447
BsaHI GRCGYC 2 cut(s) 272, 360
BsaJI CCNNGG 2 cut(s) 309, 338
BsaXI ACNNNNNCTCC 2 cut(s) 420, 450
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 3 cut(s) 55, 199, 253
Bse3DI GCAATG 1 cut(s) 247
BseDI CCNNGG 2 cut(s) 309, 338
BseGI GGATG 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 3 cut(s) 55, 199, 253
BseRI GAGGAG 1 cut(s) 214
Bsh1236I CGCG 1 cut(s) 188
BshFI GGCC 2 cut(s) 174, 198
BshNI GGYRCC 1 cut(s) 359
BsiSI CCGG 2 cut(s) 171, 357
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 69
BsmAI GTCTC 3 cut(s) 279, 402, 423
BsmBI CGTCTC 2 cut(s) 279, 402
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 2 cut(s) 174, 198
Bsp143I GATC 1 cut(s) 467
BspACI CCGC 4 cut(s) 186, 266, 349, 449
BspANI GGCC 2 cut(s) 174, 198
BspCNI CTCAG 1 cut(s) 107
BspFNI CGCG 1 cut(s) 188
BspLI GGNNCC 3 cut(s) 80, 361, 447
BspPI GGATC 1 cut(s) 462
BspT107I GGYRCC 1 cut(s) 359
BsrBI CCGCTC 1 cut(s) 349
BsrDI GCAATG 1 cut(s) 247
BsrFI RCCGGY 1 cut(s) 356
BsrI ACTGG 3 cut(s) 55, 199, 253
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 2 cut(s) 309, 338
BssMI GATC 1 cut(s) 467
BssNI GRCGYC 2 cut(s) 272, 360
BssT1I CCWWGG 1 cut(s) 309
Bst4CI ACNGT 2 cut(s) 143, 289
BstACI GRCGYC 2 cut(s) 272, 360
BstC8I GCNNGC 2 cut(s) 270, 358
BstDEI CTNAG 3 cut(s) 8, 36, 94
BstDSI CCRYGG 1 cut(s) 338
BstF5I GGATG 1 cut(s) 228
BstFNI CGCG 1 cut(s) 188
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 2 cut(s) 209, 362
BstKTI GATC 1 cut(s) 470
BstMAI GTCTC 3 cut(s) 279, 402, 423
BstMBI GATC 1 cut(s) 467
BstMWI GCNNNNNNNGC 1 cut(s) 204
BstUI CGCG 1 cut(s) 188
BstX2I RGATCY 1 cut(s) 467
BstYI RGATCY 1 cut(s) 467
BsuRI GGCC 2 cut(s) 174, 198
BtgI CCRYGG 1 cut(s) 338
BtsCI GGATG 1 cut(s) 228
BtsI GCAGTG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 235
Cac8I GCNNGC 2 cut(s) 270, 358
CfoI GCGC 2 cut(s) 209, 362
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 1 cut(s) 173
CseI GACGC 1 cut(s) 261
Csp6I GTAC 1 cut(s) 182
CviJI RGCY 9 cut(s) 35, 174, 198, 214, 295, 343, 356, 367, 425
CviKI_1 RGCY 9 cut(s) 35, 174, 198, 214, 295, 343, 356, 367, 425
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 3 cut(s) 8, 36, 94
DinI GGCGCC 1 cut(s) 361
DpnI GATC 1 cut(s) 469
DpnII GATC 1 cut(s) 467
DraIII CACNNNGTG 1 cut(s) 457
DrdI GACNNNNNNGTC 1 cut(s) 199
DseDI GACNNNNNNGTC 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 448
EcoT14I CCWWGG 1 cut(s) 309
EgeI GGCGCC 1 cut(s) 361
EheI GGCGCC 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 309
Esp3I CGTCTC 2 cut(s) 279, 402
FaiI YATR 2 cut(s) 131, 419
FaqI GGGAC 1 cut(s) 25
FauI CCCGC 1 cut(s) 193
FblI GTMKAC 1 cut(s) 315
FokI GGATG 1 cut(s) 215
FspBI CTAG 1 cut(s) 50
GlaI GCGC 2 cut(s) 208, 361
GsuI CTGGAG 3 cut(s) 15, 365, 447
HaeII RGCGCY 1 cut(s) 363
HaeIII GGCC 2 cut(s) 174, 198
HapII CCGG 2 cut(s) 171, 357
HgaI GACGC 1 cut(s) 261
HhaI GCGC 2 cut(s) 209, 362
Hin1I GRCGYC 2 cut(s) 272, 360
Hin6I GCGC 2 cut(s) 207, 360
HinP1I GCGC 2 cut(s) 207, 360
HincII GTYRAC 2 cut(s) 285, 316
HindII GTYRAC 2 cut(s) 285, 316
HinfI GANTC 1 cut(s) 320
HpaII CCGG 2 cut(s) 171, 357
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 5 cut(s) 139, 192, 285, 316, 460
Hpy188I TCNGA 3 cut(s) 15, 325, 467
Hpy8I GTNNAC 5 cut(s) 139, 192, 285, 316, 460
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 2 cut(s) 77, 436
HpyCH4III ACNGT 2 cut(s) 143, 289
HpyCH4IV ACGT 1 cut(s) 395
HpyCH4V TGCA 2 cut(s) 22, 240
HpyF10VI GCNNNNNNNGC 1 cut(s) 204
HpyF3I CTNAG 3 cut(s) 8, 36, 94
HpySE526I ACGT 1 cut(s) 395
Hsp92I GRCGYC 2 cut(s) 272, 360
HspAI GCGC 2 cut(s) 207, 360
KasI GGCGCC 1 cut(s) 359
KroI GCCGGC 1 cut(s) 356
KroNI GCCGGC 1 cut(s) 358
Kzo9I GATC 1 cut(s) 467
LmnI GCTCC 1 cut(s) 346
LweI GCATC 1 cut(s) 31
MaeI CTAG 1 cut(s) 50
MaeII ACGT 1 cut(s) 395
MaeIII GTNAC 1 cut(s) 125
MalI GATC 1 cut(s) 469
MbiI CCGCTC 1 cut(s) 349
MboI GATC 1 cut(s) 467
MfeI CAATTG 2 cut(s) 372, 472
MflI RGATCY 1 cut(s) 467
MluCI AATT 2 cut(s) 372, 472
Mly113I GGCGCC 1 cut(s) 360
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 2 cut(s) 235, 306
MroNI GCCGGC 1 cut(s) 356
MslI CAYNNNNRTG 2 cut(s) 134, 240
MspA1I CMGCKG 2 cut(s) 268, 425
MspI CCGG 2 cut(s) 171, 357
MunI CAATTG 2 cut(s) 372, 472
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 204
NaeI GCCGGC 1 cut(s) 358
NarI GGCGCC 1 cut(s) 360
NdeII GATC 1 cut(s) 467
NgoMIV GCCGGC 1 cut(s) 356
NlaIV GGNNCC 3 cut(s) 80, 361, 447
NmeAIII GCCGAG 1 cut(s) 388
NmuCI GTSAC 1 cut(s) 125
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PdiI GCCGGC 1 cut(s) 358
PfeI GAWTC 1 cut(s) 320
PluTI GGCGCC 1 cut(s) 363
PspN4I GGNNCC 3 cut(s) 80, 361, 447
PspPI GGNCC 1 cut(s) 173
PsuI RGATCY 1 cut(s) 467
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
RseI CAYNNNNRTG 2 cut(s) 134, 240
SalI GTCGAC 1 cut(s) 314
Sau3AI GATC 1 cut(s) 467
Sau96I GGNCC 1 cut(s) 173
SetI ASST 7 cut(s) 37, 69, 315, 369, 398, 427, 447
SfaNI GCATC 1 cut(s) 31
SfoI GGCGCC 1 cut(s) 361
SmiMI CAYNNNNRTG 2 cut(s) 134, 240
SpeI ACTAGT 1 cut(s) 49
Sse9I AATT 2 cut(s) 372, 472
SsiI CCGC 4 cut(s) 186, 266, 349, 449
SspDI GGCGCC 1 cut(s) 359
SspMI CTAG 1 cut(s) 50
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 2 cut(s) 143, 289
TaiI ACGT 1 cut(s) 398
TaqI TCGA 3 cut(s) 146, 203, 315
TasI AATT 2 cut(s) 372, 472
TfiI GAWTC 1 cut(s) 320
TscAI CASTG 1 cut(s) 242
TseFI GTSAC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 125
TspGWI ACGGA 1 cut(s) 405
TspRI CASTG 1 cut(s) 242
XmiI GTMKAC 1 cut(s) 315
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.