pycom01g14640

Caffeoylshikimate esterase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
14738419 .. 14738991
573 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 390 bp
ATGCCTGAAATAAGAAAACAGGTTAGAGAAAACCCTTACTGCTACAAAGGCCGGCCTCGTCTCCAAACCGGCTACGAACTTTTGAGGGTCAGTTCGGAGCTTGAACAGAGACTCGACGAGGTCACCTTGCCGTTTATAGTTCTCCATGGCGAAGACGATAAGGTTACCGATAAATCCGTCAGCAAACAGCTCCATGACGTAGCCTCCAGCCATGACAAGACGTTGAAGATGTACCCGGATATGTGGCATGGACTGCTCTATGGAGAAACACCAGAAAACATTGAGGTTGTTTTTGCAGATATAATCGGTTGGTTGGATGAGAGGAGTTGCTTCGGAAATGCAAGGCTGGAGGGAGAGTTAAAAAGTGAAAACGACGGTCTACCCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

130

Amino Acids

14.89

Weight (kDa)

5.09

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 2 - 86 6.3e-22 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 379
AfaI GTAC 1 cut(s) 233
AgsI TTSAA 2 cut(s) 104, 226
AluBI AGCT 2 cut(s) 100, 190
AluI AGCT 2 cut(s) 100, 190
Alw26I GTCTC 2 cut(s) 65, 103
AoxI GGCC 2 cut(s) 49, 53
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 115
BbsI GAAGAC 1 cut(s) 159
BceAI ACGGC 1 cut(s) 115
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 2 cut(s) 65, 103
Bme1390I CCNGG 1 cut(s) 236
BmrFI CCNGG 1 cut(s) 236
BpiI GAAGAC 1 cut(s) 159
BpmI CTGGAG 2 cut(s) 190, 368
BpuMI CCSGG 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 145
BsaXI ACNNNNNCTCC 4 cut(s) 188, 218, 341, 371
Bse118I RCCGGY 2 cut(s) 51, 68
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 1 cut(s) 322
BseRI GAGGAG 1 cut(s) 337
BshFI GGCC 2 cut(s) 51, 55
BsiSI CCGG 3 cut(s) 52, 69, 236
BsmAI GTCTC 2 cut(s) 65, 103
BsmBI CGTCTC 1 cut(s) 65
BsnI GGCC 2 cut(s) 51, 55
Bsp19I CCATGG 1 cut(s) 145
BspANI GGCC 2 cut(s) 51, 55
BsrFI RCCGGY 2 cut(s) 51, 68
BssAI RCCGGY 2 cut(s) 51, 68
BssECI CCNNGG 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 377
BstAPI GCANNNNNTGC 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 53
BstDSI CCRYGG 1 cut(s) 145
BstEII GGTNACC 2 cut(s) 121, 163
BstF5I GGATG 1 cut(s) 322
BstMAI GTCTC 2 cut(s) 65, 103
BstMWI GCNNNNNNNGC 2 cut(s) 48, 253
BstPI GGTNACC 2 cut(s) 121, 163
BstSCI CCNGG 1 cut(s) 234
BstV2I GAAGAC 1 cut(s) 159
BsuRI GGCC 2 cut(s) 51, 55
BtgI CCRYGG 1 cut(s) 145
BtsCI GGATG 1 cut(s) 322
Cac8I GCNNGC 1 cut(s) 53
Cfr10I RCCGGY 2 cut(s) 51, 68
Csp6I GTAC 1 cut(s) 232
CviAII CATG 4 cut(s) 146, 194, 212, 248
CviJI RGCY 8 cut(s) 51, 55, 72, 100, 190, 203, 210, 346
CviKI_1 RGCY 8 cut(s) 51, 55, 72, 100, 190, 203, 210, 346
CviQI GTAC 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 145
Eco91I GGTNACC 2 cut(s) 121, 163
EcoO65I GGTNACC 2 cut(s) 121, 163
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
Esp3I CGTCTC 1 cut(s) 65
FaeI CATG 4 cut(s) 149, 197, 215, 251
FaiI YATR 8 cut(s) 137, 147, 195, 213, 242, 249, 261, 302
FatI CATG 4 cut(s) 145, 193, 211, 247
FblI GTMKAC 1 cut(s) 379
FokI GGATG 1 cut(s) 329
FseI GGCCGGCC 1 cut(s) 55
GsuI CTGGAG 2 cut(s) 190, 368
HaeIII GGCC 2 cut(s) 51, 55
HapII CCGG 3 cut(s) 52, 69, 236
Hin1II CATG 4 cut(s) 149, 197, 215, 251
HinfI GANTC 1 cut(s) 111
HpaII CCGG 3 cut(s) 52, 69, 236
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 2 cut(s) 97, 335
Hpy8I GTNNAC 1 cut(s) 380
Hpy99I CGWCG 2 cut(s) 119, 377
HpyCH4III ACNGT 1 cut(s) 377
HpyCH4IV ACGT 2 cut(s) 198, 221
HpyCH4V TGCA 2 cut(s) 296, 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 253
HpySE526I ACGT 2 cut(s) 198, 221
Hsp92II CATG 4 cut(s) 149, 197, 215, 251
KroI GCCGGC 1 cut(s) 51
KroNI GCCGGC 1 cut(s) 53
LmnI GCTCC 2 cut(s) 97, 195
LpnPI CCDG 8 cut(s) 5, 18, 65, 82, 220, 249, 285, 332
MaeII ACGT 2 cut(s) 198, 221
MaeIII GTNAC 2 cut(s) 121, 163
MboII GAAGA 2 cut(s) 164, 238
MlyI GAGTC 1 cut(s) 105
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 7 cut(s) 66, 78, 112, 214, 277, 315, 343
MroNI GCCGGC 1 cut(s) 51
MseI TTAA 1 cut(s) 359
MspI CCGG 3 cut(s) 52, 69, 236
MspR9I CCNGG 1 cut(s) 236
MwoI GCNNNNNNNGC 2 cut(s) 48, 253
NaeI GCCGGC 1 cut(s) 53
NciI CCSGG 1 cut(s) 236
NcoI CCATGG 1 cut(s) 145
NgoMIV GCCGGC 1 cut(s) 51
NlaIII CATG 4 cut(s) 149, 197, 215, 251
NmuCI GTSAC 1 cut(s) 121
PdiI GCCGGC 1 cut(s) 53
PflFI GACNNNGTC 1 cut(s) 119
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
PspEI GGTNACC 2 cut(s) 121, 163
PsyI GACNNNGTC 1 cut(s) 119
RigI GGCCGGCC 1 cut(s) 55
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SaqAI TTAA 1 cut(s) 359
SchI GAGTC 1 cut(s) 105
ScrFI CCNGG 1 cut(s) 236
SetI ASST 9 cut(s) 24, 102, 123, 128, 165, 192, 201, 224, 288
StyD4I CCNGG 1 cut(s) 234
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 1 cut(s) 377
TaiI ACGT 2 cut(s) 201, 224
TaqI TCGA 1 cut(s) 114
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TseFI GTSAC 1 cut(s) 121
Tsp45I GTSAC 1 cut(s) 121
TspGWI ACGGA 1 cut(s) 166
Tth111I GACNNNGTC 1 cut(s) 119
XmiI GTMKAC 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.