pycom01g14820

Ribosomal protein L23, N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
14914460 .. 14916049
1590 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 492 bp
ATGAGATTCGTCTTCTCCACTAGAAAACCCTACACCTCGGCCGCAGCTGCTGCTCTTCGTCTACAGGTAGGATTGTTTCCCGCAGAGCTTGGAGCAATGGCCCCCGCTAAAGTTGCAAGCACGAAGAAAAGTGATCCCAAGGCCCAAGCCTTGAAGACTGCCAAGGCTGTGAAATCAGGCCCTGCTTTTAAGAAGAAGGCCAAGAAGATCAGGACATCCGTCACATTCCACAGGCCAAGGACATTGAAGAAGGAAAGGAACCCCAAGTATCCCCGCATCAGTGCAACACCAAGGAACAAATTGGACCATTACCAAATTCTCAAGTATCCATTGACCACTGAGTCTGCAATGAAAAAGATTGAGGACAACAACACCCTTGTTTTCATTGTTGACATCCGAGCGGACAAGAAGAACCCTCGGATCGATCAAGGATGCAGTGAAGAAGATGTACGACATTCAGACCAAGAAAGTGAACACCTTGATCAGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L23 Ribosomal_L23eN

Protein Analysis

164

Amino Acids

18.32

Weight (kDa)

10.13

Isoelectric Point (pI)

31.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L23eN PF03939 46 - 95 1.9e-18 Ribosomal protein L23, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 340
AccBSI CCGCTC 1 cut(s) 401
AccI GTMKAC 1 cut(s) 61
AciI CCGC 5 cut(s) 42, 81, 105, 274, 401
AclWI GGATC 2 cut(s) 128, 428
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 1 cut(s) 315
AfaI GTAC 1 cut(s) 450
AfiI CCNNNNNNNGG 1 cut(s) 484
AgsI TTSAA 2 cut(s) 154, 247
AluBI AGCT 2 cut(s) 47, 88
AluI AGCT 2 cut(s) 47, 88
AlwI GGATC 2 cut(s) 128, 428
AlwNI CAGNNNCTG 2 cut(s) 50, 182
AoxI GGCC 7 cut(s) 39, 99, 141, 178, 198, 233, 486
ApeKI GCWGC 3 cut(s) 44, 47, 50
ApoI RAATTY 1 cut(s) 315
AspS9I GGNCC 4 cut(s) 100, 142, 179, 304
AvaII GGWCC 1 cut(s) 304
BarI GAAGNNNNNNTAC 2 cut(s) 432, 464
BbsI GAAGAC 2 cut(s) 4, 161
BbvI GCAGC 3 cut(s) 34, 37, 56
BciVI GTATCC 2 cut(s) 279, 336
BclI TGATCA 1 cut(s) 481
BfaI CTAG 1 cut(s) 21
BfmI CTRYAG 1 cut(s) 62
BfuI GTATCC 2 cut(s) 279, 336
BisI GCNGC 4 cut(s) 42, 45, 48, 51
BlsI GCNGC 4 cut(s) 43, 46, 49, 52
Bme18I GGWCC 1 cut(s) 304
BmgT120I GGNCC 4 cut(s) 100, 142, 179, 304
BmiI GGNNCC 2 cut(s) 102, 260
BmsI GCATC 2 cut(s) 285, 422
BoxI GACNNNNGTC 1 cut(s) 218
BpiI GAAGAC 2 cut(s) 4, 161
BpuEI CTTGAG 1 cut(s) 305
Bsa29I ATCGAT 1 cut(s) 423
BsaJI CCNNGG 6 cut(s) 36, 138, 162, 236, 290, 416
Bsc4I CCNNNNNNNGG 1 cut(s) 484
Bse3DI GCAATG 2 cut(s) 102, 354
BseCI ATCGAT 1 cut(s) 423
BseDI CCNNGG 6 cut(s) 36, 138, 162, 236, 290, 416
BseGI GGATG 3 cut(s) 215, 393, 437
BseLI CCNNNNNNNGG 1 cut(s) 484
BseMI GCAATG 2 cut(s) 102, 354
BseMII CTCAG 1 cut(s) 330
BseX3I CGGCCG 1 cut(s) 39
BseXI GCAGC 3 cut(s) 34, 37, 56
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 7 cut(s) 41, 101, 143, 180, 200, 235, 488
BshVI ATCGAT 1 cut(s) 423
BsiEI CGRYCG 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 484
BsnI GGCC 7 cut(s) 41, 101, 143, 180, 200, 235, 488
Bsp143I GATC 5 cut(s) 133, 207, 420, 424, 481
BspACI CCGC 5 cut(s) 42, 81, 105, 274, 401
BspANI GGCC 7 cut(s) 41, 101, 143, 180, 200, 235, 488
BspCNI CTCAG 1 cut(s) 331
BspDI ATCGAT 1 cut(s) 423
BspLI GGNNCC 2 cut(s) 102, 260
BspPI GGATC 2 cut(s) 128, 428
BspQI GCTCTTC 1 cut(s) 60
BsrBI CCGCTC 1 cut(s) 401
BsrDI GCAATG 2 cut(s) 102, 354
BssECI CCNNGG 6 cut(s) 36, 138, 162, 236, 290, 416
BssMI GATC 5 cut(s) 133, 207, 420, 424, 481
BssT1I CCWWGG 4 cut(s) 138, 162, 236, 290
Bst6I CTCTTC 1 cut(s) 60
BstAPI GCANNNNNTGC 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 1 cut(s) 339
BstENI CCTNNNNNAGG 1 cut(s) 482
BstF5I GGATG 3 cut(s) 215, 393, 437
BstKTI GATC 5 cut(s) 136, 210, 423, 427, 484
BstMBI GATC 5 cut(s) 133, 207, 420, 424, 481
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 3 cut(s) 47, 50, 113
BstPAI GACNNNNGTC 1 cut(s) 218
BstSFI CTRYAG 1 cut(s) 62
BstV1I GCAGC 3 cut(s) 34, 37, 56
BstV2I GAAGAC 2 cut(s) 4, 161
BstZI CGGCCG 1 cut(s) 39
Bsu15I ATCGAT 1 cut(s) 423
BsuI GTATCC 2 cut(s) 279, 336
BsuRI GGCC 7 cut(s) 41, 101, 143, 180, 200, 235, 488
BsuTUI ATCGAT 1 cut(s) 423
BtsCI GGATG 3 cut(s) 215, 393, 437
BtsI GCAGTG 1 cut(s) 442
BtsIMutI CAGTG 3 cut(s) 286, 336, 442
Cac8I GCNNGC 1 cut(s) 118
CaiI CAGNNNCTG 2 cut(s) 50, 182
Cfr13I GGNCC 4 cut(s) 100, 142, 179, 304
ClaI ATCGAT 1 cut(s) 423
Csp6I GTAC 1 cut(s) 449
CviQI GTAC 1 cut(s) 449
DdeI CTNAG 1 cut(s) 339
DpnI GATC 5 cut(s) 135, 209, 422, 426, 483
DpnII GATC 5 cut(s) 133, 207, 420, 424, 481
DrdI GACNNNNNNGTC 1 cut(s) 340
DseDI GACNNNNNNGTC 1 cut(s) 340
EaeI YGGCCR 1 cut(s) 39
EagI CGGCCG 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
EclXI CGGCCG 1 cut(s) 39
Eco130I CCWWGG 4 cut(s) 138, 162, 236, 290
Eco147I AGGCCT 1 cut(s) 488
Eco47I GGWCC 1 cut(s) 304
Eco52I CGGCCG 1 cut(s) 39
EcoNI CCTNNNNNAGG 1 cut(s) 482
EcoO109I RGGNCCY 1 cut(s) 179
EcoT14I CCWWGG 4 cut(s) 138, 162, 236, 290
ErhI CCWWGG 4 cut(s) 138, 162, 236, 290
FauI CCCGC 3 cut(s) 88, 112, 281
FbaI TGATCA 1 cut(s) 481
FblI GTMKAC 1 cut(s) 61
Fnu4HI GCNGC 4 cut(s) 42, 45, 48, 51
FokI GGATG 3 cut(s) 202, 380, 444
Fsp4HI GCNGC 4 cut(s) 42, 45, 48, 51
FspBI CTAG 1 cut(s) 21
GluI GCNGC 4 cut(s) 42, 45, 48, 51
HaeIII GGCC 7 cut(s) 41, 101, 143, 180, 200, 235, 488
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 2 cut(s) 6, 341
Hpy166II GTNNAC 3 cut(s) 62, 391, 473
Hpy188I TCNGA 3 cut(s) 398, 420, 460
Hpy188III TCNNGA 1 cut(s) 211
Hpy8I GTNNAC 3 cut(s) 62, 391, 473
HpyAV CCTTC 2 cut(s) 190, 244
HpyCH4V TGCA 4 cut(s) 116, 284, 347, 435
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 50, 113
HpyF3I CTNAG 1 cut(s) 339
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 5 cut(s) 133, 207, 420, 424, 481
LguI GCTCTTC 1 cut(s) 60
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 6 cut(s) 50, 162, 195, 196, 217, 470
Lsp1109I GCAGC 3 cut(s) 34, 37, 56
LweI GCATC 2 cut(s) 285, 422
MaeI CTAG 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 220
MalI GATC 5 cut(s) 135, 209, 422, 426, 483
MbiI CCGCTC 1 cut(s) 401
MboI GATC 5 cut(s) 133, 207, 420, 424, 481
MluCI AATT 2 cut(s) 299, 315
MlyI GAGTC 1 cut(s) 350
MnlI CCTC 3 cut(s) 46, 355, 426
MseI TTAA 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 47
MwoI GCNNNNNNNGC 3 cut(s) 47, 50, 113
NdeII GATC 5 cut(s) 133, 207, 420, 424, 481
NlaIV GGNNCC 2 cut(s) 102, 260
NmeAIII GCCGAG 1 cut(s) 17
NmuCI GTSAC 1 cut(s) 220
PceI AGGCCT 1 cut(s) 488
PciSI GCTCTTC 1 cut(s) 60
PfeI GAWTC 1 cut(s) 6
PkrI GCNGC 4 cut(s) 43, 46, 49, 52
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
PshAI GACNNNNGTC 1 cut(s) 218
PspN4I GGNNCC 2 cut(s) 102, 260
PspPI GGNCC 4 cut(s) 100, 142, 179, 304
PstNI CAGNNNCTG 2 cut(s) 50, 182
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 1 cut(s) 450
RsaNI GTAC 1 cut(s) 449
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 4 cut(s) 42, 45, 48, 51
Sau3AI GATC 5 cut(s) 133, 207, 420, 424, 481
Sau96I GGNCC 4 cut(s) 100, 142, 179, 304
SchI GAGTC 1 cut(s) 350
SetI ASST 5 cut(s) 38, 49, 69, 90, 480
SfaNI GCATC 2 cut(s) 285, 422
SfcI CTRYAG 1 cut(s) 62
SinI GGWCC 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 2 cut(s) 299, 315
SseBI AGGCCT 1 cut(s) 488
SsiI CCGC 5 cut(s) 42, 81, 105, 274, 401
SspMI CTAG 1 cut(s) 21
StuI AGGCCT 1 cut(s) 488
StyI CCWWGG 4 cut(s) 138, 162, 236, 290
TaqI TCGA 1 cut(s) 423
TasI AATT 2 cut(s) 299, 315
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 1 cut(s) 6
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 3 cut(s) 286, 343, 442
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 3 cut(s) 44, 47, 50
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 365, 373
TspGWI ACGGA 1 cut(s) 208
TspRI CASTG 3 cut(s) 286, 343, 442
VpaK11BI GGWCC 1 cut(s) 304
XagI CCTNNNNNAGG 1 cut(s) 482
XapI RAATTY 1 cut(s) 315
XmiI GTMKAC 1 cut(s) 61
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.