pycom01g15550
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
15390804 .. 15391058
255 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 255 bp
ATGAGTGGCGGGATTCGCACAAGCGTGAAAGGGTGCACTATGGTGAAACGCGGGGATTTCGCTGTGGACACAACGCATGAGAATACTGGGAGGGATAATGCTAGCGAGACAACATTTATTAATAGCCATTCGAGTAATGCGCCCCAATTAACTGCAGCTGCTGATTGCATAGACAAGAAACCAGCTAATGAAGATTCACCTTCGAACCCACCTCGCGATGGTAGGTTTGCGACTTGCGATTCATTCACTCTTTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

8.92

Weight (kDa)

5.5

Isoelectric Point (pI)

41.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029198)

Species Orthologous Gene IDs
pyrus_communis pycom01g15550 pycom01g16150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 51, 216
AciI CCGC 2 cut(s) 9, 51
AfiI CCNNNNNNNGG 1 cut(s) 218
AleI CACNNNNGTG 2 cut(s) 23, 41
AluBI AGCT 2 cut(s) 158, 185
AluI AGCT 2 cut(s) 158, 185
Alw21I GWGCWC 1 cut(s) 38
Alw26I GTCTC 1 cut(s) 101
Alw44I GTGCAC 1 cut(s) 34
AlwNI CAGNNNCTG 1 cut(s) 161
ApaLI GTGCAC 1 cut(s) 34
ApeKI GCWGC 2 cut(s) 155, 158
AseI ATTAAT 1 cut(s) 120
AspLEI GCGC 1 cut(s) 142
AsuHPI GGTGA 2 cut(s) 55, 189
AsuII TTCGAA 1 cut(s) 203
AsuNHI GCTAGC 1 cut(s) 101
BaeGI GKGCMC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 38
BbvI GCAGC 2 cut(s) 145, 167
BccI CCATC 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 153
BisI GCNGC 2 cut(s) 156, 159
BlsI GCNGC 2 cut(s) 157, 160
BmrI ACTGGG 1 cut(s) 96
BmtI GCTAGC 1 cut(s) 105
BmuI ACTGGG 1 cut(s) 96
Bpu14I TTCGAA 1 cut(s) 203
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 91
BseSI GKGCMC 1 cut(s) 38
BseXI GCAGC 2 cut(s) 145, 167
Bsh1236I CGCG 2 cut(s) 51, 216
BsiHKAI GWGCWC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 101
Bsp119I TTCGAA 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 38
Bsp68I TCGCGA 1 cut(s) 216
BspACI CCGC 2 cut(s) 9, 51
BspFNI CGCG 2 cut(s) 51, 216
BspMAI CTGCAG 1 cut(s) 157
BspOI GCTAGC 1 cut(s) 105
BspT104I TTCGAA 1 cut(s) 203
BsrI ACTGG 1 cut(s) 91
BstBI TTCGAA 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 103
BstFNI CGCG 2 cut(s) 51, 216
BstHHI GCGC 1 cut(s) 142
BstMAI GTCTC 1 cut(s) 101
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstSFI CTRYAG 1 cut(s) 153
BstSLI GKGCMC 1 cut(s) 38
BstUI CGCG 2 cut(s) 51, 216
BstV1I GCAGC 2 cut(s) 145, 167
BtgZI GCGATG 1 cut(s) 231
BtuMI TCGCGA 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 103
CaiI CAGNNNCTG 1 cut(s) 161
CfoI GCGC 1 cut(s) 142
CviAII CATG 1 cut(s) 77
CviJI RGCY 3 cut(s) 126, 158, 185
CviKI_1 RGCY 3 cut(s) 126, 158, 185
FaeI CATG 1 cut(s) 80
FaiI YATR 3 cut(s) 41, 78, 170
FatI CATG 1 cut(s) 76
FauI CCCGC 2 cut(s) 2, 44
Fnu4HI GCNGC 2 cut(s) 156, 159
Fsp4HI GCNGC 2 cut(s) 156, 159
FspBI CTAG 1 cut(s) 102
GlaI GCGC 1 cut(s) 141
GluI GCNGC 2 cut(s) 156, 159
HhaI GCGC 1 cut(s) 142
Hin1II CATG 1 cut(s) 80
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HinfI GANTC 3 cut(s) 13, 194, 239
HphI GGTGA 2 cut(s) 55, 189
Hpy166II GTNNAC 2 cut(s) 36, 67
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 2 cut(s) 36, 67
HpyAV CCTTC 1 cut(s) 210
HpyCH4V TGCA 3 cut(s) 36, 155, 168
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
Hsp92II CATG 1 cut(s) 80
HspAI GCGC 1 cut(s) 140
LpnPI CCDG 2 cut(s) 72, 195
Lsp1109I GCAGC 2 cut(s) 145, 167
MaeI CTAG 1 cut(s) 102
MboII GAAGA 1 cut(s) 203
MhlI GDGCHC 1 cut(s) 38
MluCI AATT 1 cut(s) 146
MnlI CCTC 2 cut(s) 84, 222
MseI TTAA 2 cut(s) 120, 149
MslI CAYNNNNRTG 2 cut(s) 23, 41
MspA1I CMGCKG 1 cut(s) 158
MvnI CGCG 2 cut(s) 51, 216
MwoI GCNNNNNNNGC 1 cut(s) 15
NheI GCTAGC 1 cut(s) 101
NlaIII CATG 1 cut(s) 80
NruI TCGCGA 1 cut(s) 216
NspV TTCGAA 1 cut(s) 203
OliI CACNNNNGTG 2 cut(s) 23, 41
PfeI GAWTC 3 cut(s) 13, 194, 239
PkrI GCNGC 2 cut(s) 157, 160
PshBI ATTAAT 1 cut(s) 120
PstI CTGCAG 1 cut(s) 157
PstNI CAGNNNCTG 1 cut(s) 161
PvuII CAGCTG 1 cut(s) 158
RruI TCGCGA 1 cut(s) 216
RseI CAYNNNNRTG 2 cut(s) 23, 41
SaqAI TTAA 2 cut(s) 120, 149
SatI GCNGC 2 cut(s) 156, 159
SduI GDGCHC 1 cut(s) 38
SetI ASST 5 cut(s) 160, 187, 202, 214, 227
SfcI CTRYAG 1 cut(s) 153
SfuI TTCGAA 1 cut(s) 203
SmiMI CAYNNNNRTG 2 cut(s) 23, 41
Sse9I AATT 1 cut(s) 146
SsiI CCGC 2 cut(s) 9, 51
SspMI CTAG 1 cut(s) 102
TaqI TCGA 2 cut(s) 131, 203
TasI AATT 1 cut(s) 146
TfiI GAWTC 3 cut(s) 13, 194, 239
Tru1I TTAA 2 cut(s) 120, 149
Tru9I TTAA 2 cut(s) 120, 149
TseI GCWGC 2 cut(s) 155, 158
TspDTI ATGAA 2 cut(s) 204, 231
VneI GTGCAC 1 cut(s) 34
VspI ATTAAT 1 cut(s) 120
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.