Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

15500656 .. 15501710

Gene Structure 1055 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCCGCTCGTTGATGGTATTGACTATGATGCCGTGGCTTGGGATATTGCCGTGAAAACCACGAAGGTTGGGGAGATTGCTAAGATCACTTGCAAGCCGGAACATGCCTATGGTAGTGCGGGTTCTCCACCAGATATTCCAGAAGAATGTAAAATTTCCGGATGCATGCTGGAAAGAAAAGTACATAAACTCCGGGGGGTAAGACTTCGCCAGGAAGCCTTCACACGCGAATATACTGCGAGTCATACCATCATCCTTTACACTTTTTGTTGCTTCCGTCGAGATCTACCAACTTTTTCATCAAGGGTAGGTTTGATTGAATTTTTCATTGTTACTCACAACAGAGAGCTGAAGAAACAGAGGGAGTTAGCTGCTGCAAACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

129

Amino Acids

14.52

Weight (kDa)

8.85

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	13 - 49	9e-07	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	7
AccII	CGCG	1 cut(s)	228
AccIII	TCCGGA	1 cut(s)	158
AciI	CCGC	2 cut(s)	5, 119
AcsI	RAATTY	2 cut(s)	153, 320
AcuI	CTGAAG	1 cut(s)	371
AfaI	GTAC	1 cut(s)	183
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	1 cut(s)	320
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	2 cut(s)	349, 371
AluI	AGCT	2 cut(s)	349, 371
Aor13HI	TCCGGA	1 cut(s)	158
ApeKI	GCWGC	2 cut(s)	371, 374
ApoI	RAATTY	2 cut(s)	153, 320
AsuC2I	CCSGG	1 cut(s)	194
BbvI	GCAGC	2 cut(s)	358, 361
BccI	CCATC	2 cut(s)	8, 257
BceAI	ACGGC	2 cut(s)	17, 35
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BciT130I	CCWGG	1 cut(s)	212
BcnI	CCSGG	1 cut(s)	194
BglII	AGATCT	1 cut(s)	283
BisI	GCNGC	3 cut(s)	5, 372, 375
BlsI	GCNGC	3 cut(s)	6, 373, 376
Bme1390I	CCNGG	2 cut(s)	194, 212
BmrFI	CCNGG	2 cut(s)	194, 212
BmsI	GCATC	2 cut(s)	19, 152
BpuMI	CCSGG	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	33, 193
BsaWI	WCCGGW	1 cut(s)	158
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
BseAI	TCCGGA	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	2 cut(s)	33, 193
BseGI	GGATG	2 cut(s)	167, 252
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseXI	GCAGC	2 cut(s)	358, 361
Bsh1236I	CGCG	1 cut(s)	228
BsiSI	CCGG	3 cut(s)	98, 159, 193
BslI	CCNNNNNNNGG	1 cut(s)	39
Bsp13I	TCCGGA	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	84, 283
BspACI	CCGC	2 cut(s)	5, 119
BspEI	TCCGGA	1 cut(s)	158
BspFNI	CGCG	1 cut(s)	228
BsrBI	CCGCTC	1 cut(s)	7
BssECI	CCNNGG	2 cut(s)	33, 193
BssMI	GATC	2 cut(s)	84, 283
Bst2UI	CCWGG	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	95, 167
BstDEI	CTNAG	1 cut(s)	81
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	2 cut(s)	167, 252
BstFNI	CGCG	1 cut(s)	228
BstKTI	GATC	2 cut(s)	87, 286
BstMBI	GATC	2 cut(s)	84, 283
BstNI	CCWGG	1 cut(s)	212
BstNSI	RCATGY	2 cut(s)	107, 169
BstSCI	CCNGG	2 cut(s)	192, 210
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	2 cut(s)	358, 361
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	2 cut(s)	167, 252
Cac8I	GCNNGC	2 cut(s)	95, 167
Csp6I	GTAC	1 cut(s)	182
CspCI	CAANNNNNGTGG	2 cut(s)	49, 84
CviAII	CATG	2 cut(s)	104, 166
CviJI	RGCY	5 cut(s)	38, 97, 218, 349, 371
CviKI_1	RGCY	5 cut(s)	38, 97, 218, 349, 371
CviQI	GTAC	1 cut(s)	182
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	2 cut(s)	86, 285
DpnII	GATC	2 cut(s)	84, 283
Eco57I	CTGAAG	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	210
EcoT22I	ATGCAT	1 cut(s)	167
FaeI	CATG	2 cut(s)	107, 169
FaiI	YATR	7 cut(s)	27, 105, 111, 167, 186, 234, 246
FatI	CATG	2 cut(s)	103, 165
FauI	CCCGC	1 cut(s)	112
Fnu4HI	GCNGC	3 cut(s)	5, 372, 375
FokI	GGATG	2 cut(s)	174, 239
Fsp4HI	GCNGC	3 cut(s)	5, 372, 375
GluI	GCNGC	3 cut(s)	5, 372, 375
HapII	CCGG	3 cut(s)	98, 159, 193
Hin1II	CATG	2 cut(s)	107, 169
HinfI	GANTC	1 cut(s)	241
HpaII	CCGG	3 cut(s)	98, 159, 193
Hpy188III	TCNNGA	3 cut(s)	140, 159, 281
Hpy99I	CGWCG	1 cut(s)	282
HpyAV	CCTTC	2 cut(s)	58, 229
HpyCH4V	TGCA	3 cut(s)	93, 165, 377
HpyF3I	CTNAG	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	107, 169
Kpn2I	TCCGGA	1 cut(s)	158
Kzo9I	GATC	2 cut(s)	84, 283
LpnPI	CCDG	8 cut(s)	111, 144, 153, 155, 172, 197, 206, 224
Lsp1109I	GCAGC	2 cut(s)	358, 361
LweI	GCATC	2 cut(s)	19, 152
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	2 cut(s)	86, 285
MbiI	CCGCTC	1 cut(s)	7
MboI	GATC	2 cut(s)	84, 283
MboII	GAAGA	2 cut(s)	155, 364
MflI	RGATCY	1 cut(s)	283
MluCI	AATT	2 cut(s)	153, 320
MlyI	GAGTC	1 cut(s)	250
MnlI	CCTC	1 cut(s)	354
Mph1103I	ATGCAT	1 cut(s)	167
MroI	TCCGGA	1 cut(s)	158
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	3 cut(s)	98, 159, 193
MspR9I	CCNGG	2 cut(s)	194, 212
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	1 cut(s)	228
NciI	CCSGG	1 cut(s)	194
NdeII	GATC	2 cut(s)	84, 283
NlaIII	CATG	2 cut(s)	107, 169
NsiI	ATGCAT	1 cut(s)	167
NspI	RCATGY	2 cut(s)	107, 169
PaeI	GCATGC	1 cut(s)	169
PkrI	GCNGC	3 cut(s)	6, 373, 376
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PsrI	GAACNNNNNNTAC	2 cut(s)	106, 138
PsuI	RGATCY	1 cut(s)	283
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
RseI	CAYNNNNRTG	1 cut(s)	108
SatI	GCNGC	3 cut(s)	5, 372, 375
Sau3AI	GATC	2 cut(s)	84, 283
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	2 cut(s)	194, 212
SetI	ASST	4 cut(s)	69, 313, 351, 373
SfaNI	GCATC	2 cut(s)	19, 152
SmiMI	CAYNNNNRTG	1 cut(s)	108
SphI	GCATGC	1 cut(s)	169
Sse9I	AATT	2 cut(s)	153, 320
SsiI	CCGC	2 cut(s)	5, 119
StyD4I	CCNGG	2 cut(s)	192, 210
TaqI	TCGA	1 cut(s)	280
TasI	AATT	2 cut(s)	153, 320
TatI	WGTACW	1 cut(s)	181
TauI	GCSGC	1 cut(s)	7
TseI	GCWGC	2 cut(s)	371, 374
TspDTI	ATGAA	2 cut(s)	288, 316
TspGWI	ACGGA	1 cut(s)	266
XapI	RAATTY	2 cut(s)	153, 320
XceI	RCATGY	2 cut(s)	107, 169
Zsp2I	ATGCAT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.