pycom01g16020

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
15740217 .. 15742161
1945 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 801 bp
ATGCGGACGCGTGGAACTAGGGCACTGTCGAAATCGTATATAAAAAGTCCATCGAAGCTCAAAAAACTTCAAGAAATTTCTGAAACTTCCGAAAACGAGAAACGAAAACTCGAATTTGGAAACGGTTTCCTGTTTTTCGGATATTTTCGAGCGATGAATGCGGAGGGGAATACGGAAGAGGAAGTGAAGATGGAAGAGGGGAAAGAGAATGTGGTGTTCATGTGGGGGTATCTGCCCGGAGCTCTGCCGCACAGGTCGCCGCTTCTGTCGCCGACGGTCGTGCGGGCGGCCGGAGCTGAGTACGCGTGGAAGGATGTGTGCGGTGGCGGCTGCGGCTTCGCCATGGCCATTTCAGAACCTGGAAAGCTTATTACATGGGGATCAACAGATGATCTGGGCCAAAGCTATGTGACATCTGGGAAGCATGGGGAAAATCCGGAACCTTTTCCTCTTCCAAATGATGCTTCTATAGTAAAGGCGGCTGCGGGTTGGGCCCATTGTGTTGCAGTCACAGATAATGGACGAGTTTACACATGGGGATGGAAAGAGTGTGTTCCATCTGGGAAGGTCTTTGGGGAGCAATCTATGGGGTCAGACCGTGAAAAGGATGCATTTGAAAGGCAGAATTCCTTTATGACCGAGCAAGCCCTCGCTGTCATGGCTCACGATCCACTGCCGCGGCAGTTTCTGCTAGTGAAGAAAGTACAAAGCGAAGAAAATTATCTTCAGCAAAACAAGCGGCTGAATGTTCATCATCTGGTGATGAACCTCCGTCAGCATTGCCCTGTCTTGTGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

267

Amino Acids

29.8

Weight (kDa)

7.67

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 84 - 185 2.6e-15 RCC1-like domain
RCC1_2 PF13540 157 - 181 1.1e-07 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 10, 305, 679
AccIII TCCGGA 1 cut(s) 436
AclWI GGATC 2 cut(s) 388, 662
AcoI YGGCCR 2 cut(s) 288, 345
AcsI RAATTY 3 cut(s) 75, 113, 625
AcuI CTGAAG 1 cut(s) 710
AfaI GTAC 2 cut(s) 302, 705
AfiI CCNNNNNNNGG 1 cut(s) 604
AflIII ACRYGT 2 cut(s) 8, 303
AgsI TTSAA 2 cut(s) 71, 617
AjnI CCWGG 1 cut(s) 358
AjuI GAANNNNNNNTTGG 2 cut(s) 448, 480
AluBI AGCT 5 cut(s) 58, 242, 296, 367, 405
AluI AGCT 5 cut(s) 58, 242, 296, 367, 405
Alw21I GWGCWC 1 cut(s) 244
AlwI GGATC 2 cut(s) 388, 662
AlwNI CAGNNNCTG 2 cut(s) 359, 688
Aor13HI TCCGGA 1 cut(s) 436
AoxI GGCC 4 cut(s) 288, 345, 397, 492
ApaI GGGCCC 1 cut(s) 496
ApeKI GCWGC 2 cut(s) 330, 482
ApoI RAATTY 3 cut(s) 75, 113, 625
Asp700I GAANNNNTTC 1 cut(s) 444
AspS9I GGNCC 3 cut(s) 397, 492, 493
AsuC2I CCSGG 1 cut(s) 237
AsuHPI GGTGA 1 cut(s) 772
BaeGI GKGCMC 2 cut(s) 25, 496
BalI TGGCCA 1 cut(s) 347
BanII GRGCYC 2 cut(s) 244, 496
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 2 cut(s) 317, 469
BccI CCATC 4 cut(s) 58, 184, 534, 565
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciT130I CCWGG 1 cut(s) 360
BcnI CCSGG 1 cut(s) 237
BfaI CTAG 2 cut(s) 18, 692
BfmI CTRYAG 1 cut(s) 468
Bme1390I CCNGG 2 cut(s) 237, 360
BmgT120I GGNCC 3 cut(s) 397, 492, 493
BmiI GGNNCC 2 cut(s) 441, 494
BmrFI CCNGG 2 cut(s) 237, 360
BmsI GCATC 2 cut(s) 451, 598
BpuMI CCSGG 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 342, 677
BsaWI WCCGGW 1 cut(s) 436
Bsc4I CCNNNNNNNGG 1 cut(s) 604
Bse3DI GCAATG 1 cut(s) 778
BseAI TCCGGA 1 cut(s) 436
BseBI CCWGG 1 cut(s) 360
BseDI CCNNGG 2 cut(s) 342, 677
BseGI GGATG 3 cut(s) 319, 545, 613
BseLI CCNNNNNNNGG 1 cut(s) 604
BseMI GCAATG 1 cut(s) 778
BseMII CTCAG 1 cut(s) 288
BseSI GKGCMC 2 cut(s) 25, 496
BseX3I CGGCCG 1 cut(s) 288
BseXI GCAGC 2 cut(s) 317, 469
Bsh1236I CGCG 3 cut(s) 10, 305, 679
Bsh1285I CGRYCG 2 cut(s) 279, 291
BshFI GGCC 4 cut(s) 290, 347, 399, 494
BsiEI CGRYCG 2 cut(s) 279, 291
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 3 cut(s) 237, 291, 437
BslI CCNNNNNNNGG 1 cut(s) 604
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 4 cut(s) 290, 347, 399, 494
Bsp120I GGGCCC 1 cut(s) 492
Bsp1286I GDGCHC 3 cut(s) 25, 244, 496
Bsp13I TCCGGA 1 cut(s) 436
Bsp143I GATC 3 cut(s) 380, 391, 667
Bsp19I CCATGG 1 cut(s) 342
BspANI GGCC 4 cut(s) 290, 347, 399, 494
BspCNI CTCAG 1 cut(s) 289
BspEI TCCGGA 1 cut(s) 436
BspFNI CGCG 3 cut(s) 10, 305, 679
BspLI GGNNCC 2 cut(s) 441, 494
BspPI GGATC 2 cut(s) 388, 662
BsrDI GCAATG 1 cut(s) 778
BssECI CCNNGG 2 cut(s) 342, 677
BssMI GATC 3 cut(s) 380, 391, 667
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 360
Bst4CI ACNGT 4 cut(s) 27, 125, 277, 599
Bst6I CTCTTC 3 cut(s) 171, 189, 456
BstAPI GCANNNNNTGC 1 cut(s) 688
BstC8I GCNNGC 2 cut(s) 285, 645
BstDEI CTNAG 1 cut(s) 297
BstDSI CCRYGG 2 cut(s) 342, 677
BstF5I GGATG 3 cut(s) 319, 545, 613
BstFNI CGCG 3 cut(s) 10, 305, 679
BstKTI GATC 3 cut(s) 383, 394, 670
BstMBI GATC 3 cut(s) 380, 391, 667
BstMCI CGRYCG 2 cut(s) 279, 291
BstNI CCWGG 1 cut(s) 360
BstSCI CCNGG 2 cut(s) 235, 358
BstSFI CTRYAG 1 cut(s) 468
BstSLI GKGCMC 2 cut(s) 25, 496
BstUI CGCG 3 cut(s) 10, 305, 679
BstV1I GCAGC 2 cut(s) 317, 469
BstZI CGGCCG 1 cut(s) 288
BsuRI GGCC 4 cut(s) 290, 347, 399, 494
BtgI CCRYGG 2 cut(s) 342, 677
BtgZI GCGATG 1 cut(s) 167
BtsCI GGATG 3 cut(s) 319, 545, 613
BtsI GCAGTG 1 cut(s) 671
BtsIMutI CAGTG 2 cut(s) 23, 671
Cac8I GCNNGC 2 cut(s) 285, 645
CaiI CAGNNNCTG 2 cut(s) 359, 688
Cfr13I GGNCC 3 cut(s) 397, 492, 493
Cfr42I CCGCGG 1 cut(s) 680
CseI GACGC 1 cut(s) 16
Csp6I GTAC 2 cut(s) 301, 704
CviAII CATG 6 cut(s) 220, 343, 375, 425, 534, 658
CviQI GTAC 2 cut(s) 301, 704
DdeI CTNAG 1 cut(s) 297
DpnI GATC 3 cut(s) 382, 393, 669
DpnII GATC 3 cut(s) 380, 391, 667
EaeI YGGCCR 2 cut(s) 288, 345
EagI CGGCCG 1 cut(s) 288
Eam1104I CTCTTC 3 cut(s) 171, 189, 456
EarI CTCTTC 3 cut(s) 171, 189, 456
Ecl136II GAGCTC 1 cut(s) 242
EclXI CGGCCG 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 342
Eco24I GRGCYC 2 cut(s) 244, 496
Eco52I CGGCCG 1 cut(s) 288
Eco53kI GAGCTC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 710
EcoICRI GAGCTC 1 cut(s) 242
EcoRI GAATTC 1 cut(s) 625
EcoRII CCWGG 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 342
EcoT22I ATGCAT 1 cut(s) 613
EcoT38I GRGCYC 2 cut(s) 244, 496
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 6 cut(s) 223, 346, 378, 428, 537, 661
FatI CATG 6 cut(s) 219, 342, 374, 424, 533, 657
FauI CCCGC 2 cut(s) 276, 478
FokI GGATG 3 cut(s) 326, 552, 620
FriOI GRGCYC 2 cut(s) 244, 496
FspBI CTAG 2 cut(s) 18, 692
HaeIII GGCC 4 cut(s) 290, 347, 399, 494
HapII CCGG 3 cut(s) 237, 291, 437
HgaI GACGC 1 cut(s) 16
Hin1II CATG 6 cut(s) 223, 346, 378, 428, 537, 661
HindIII AAGCTT 1 cut(s) 365
HpaII CCGG 3 cut(s) 237, 291, 437
HphI GGTGA 1 cut(s) 772
Hpy166II GTNNAC 1 cut(s) 529
Hpy188I TCNGA 5 cut(s) 82, 91, 140, 355, 595
Hpy188III TCNNGA 3 cut(s) 71, 437, 665
Hpy8I GTNNAC 1 cut(s) 529
Hpy99I CGWCG 1 cut(s) 277
HpyAV CCTTC 2 cut(s) 304, 559
HpyCH4III ACNGT 4 cut(s) 27, 125, 277, 599
HpyCH4V TGCA 2 cut(s) 506, 611
HpyF3I CTNAG 1 cut(s) 297
Hsp92II CATG 6 cut(s) 223, 346, 378, 428, 537, 661
Kpn2I TCCGGA 1 cut(s) 436
KspI CCGCGG 1 cut(s) 680
Kzo9I GATC 3 cut(s) 380, 391, 667
LmnI GCTCC 3 cut(s) 239, 293, 577
Lsp1109I GCAGC 2 cut(s) 317, 469
LweI GCATC 2 cut(s) 451, 598
MaeI CTAG 2 cut(s) 18, 692
MaeIII GTNAC 2 cut(s) 409, 508
MalI GATC 3 cut(s) 382, 393, 669
MboI GATC 3 cut(s) 380, 391, 667
MboII GAAGA 7 cut(s) 188, 199, 206, 443, 709, 716, 725
MhlI GDGCHC 3 cut(s) 25, 244, 496
MlsI TGGCCA 1 cut(s) 347
MluCI AATT 4 cut(s) 75, 113, 625, 718
MluI ACGCGT 2 cut(s) 8, 303
MluNI TGGCCA 1 cut(s) 347
MnlI CCTC 6 cut(s) 157, 172, 190, 459, 659, 779
Mox20I TGGCCA 1 cut(s) 347
Mph1103I ATGCAT 1 cut(s) 613
MroI TCCGGA 1 cut(s) 436
MroXI GAANNNNTTC 1 cut(s) 444
MscI TGGCCA 1 cut(s) 347
MslI CAYNNNNRTG 1 cut(s) 538
Msp20I TGGCCA 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 679
MspI CCGG 3 cut(s) 237, 291, 437
MspR9I CCNGG 2 cut(s) 237, 360
Mva1269I GAATGC 1 cut(s) 163
MvaI CCWGG 1 cut(s) 360
MvnI CGCG 3 cut(s) 10, 305, 679
NciI CCSGG 1 cut(s) 237
NcoI CCATGG 1 cut(s) 342
NdeII GATC 3 cut(s) 380, 391, 667
NlaIII CATG 6 cut(s) 223, 346, 378, 428, 537, 661
NlaIV GGNNCC 2 cut(s) 441, 494
NmuCI GTSAC 2 cut(s) 409, 508
NsiI ATGCAT 1 cut(s) 613
PctI GAATGC 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 444
Psp124BI GAGCTC 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 358
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 2 cut(s) 441, 494
PspOMI GGGCCC 1 cut(s) 492
PspPI GGNCC 3 cut(s) 397, 492, 493
PstNI CAGNNNCTG 2 cut(s) 359, 688
RsaI GTAC 2 cut(s) 302, 705
RsaNI GTAC 2 cut(s) 301, 704
RseI CAYNNNNRTG 1 cut(s) 538
SacI GAGCTC 1 cut(s) 244
SacII CCGCGG 1 cut(s) 680
Sau3AI GATC 3 cut(s) 380, 391, 667
Sau96I GGNCC 3 cut(s) 397, 492, 493
ScrFI CCNGG 2 cut(s) 237, 360
SduI GDGCHC 3 cut(s) 25, 244, 496
SfaNI GCATC 2 cut(s) 451, 598
SfcI CTRYAG 1 cut(s) 468
Sfr303I CCGCGG 1 cut(s) 680
SgrBI CCGCGG 1 cut(s) 680
SmiMI CAYNNNNRTG 1 cut(s) 538
Sse9I AATT 4 cut(s) 75, 113, 625, 718
SspMI CTAG 2 cut(s) 18, 692
SstI GAGCTC 1 cut(s) 244
StyD4I CCNGG 2 cut(s) 235, 358
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 4 cut(s) 27, 125, 277, 599
TaqI TCGA 4 cut(s) 29, 53, 111, 148
TaqII GACCGA 1 cut(s) 653
TasI AATT 4 cut(s) 75, 113, 625, 718
TatI WGTACW 1 cut(s) 703
TauI GCSGC 9 cut(s) 250, 262, 290, 330, 336, 482, 679, 682, 742
TscAI CASTG 2 cut(s) 30, 678
TseFI GTSAC 2 cut(s) 409, 508
TseI GCWGC 2 cut(s) 330, 482
Tsp45I GTSAC 2 cut(s) 409, 508
TspDTI ATGAA 4 cut(s) 170, 208, 740, 779
TspGWI ACGGA 2 cut(s) 188, 761
TspRI CASTG 2 cut(s) 30, 678
XapI RAATTY 3 cut(s) 75, 113, 625
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 2 cut(s) 18, 692
Zsp2I ATGCAT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.