pycom01g16110

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
N/A
Physical Location & Seq
Forward (+)
15796863 .. 15797465
603 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 603 bp
ATGTCCACCGCCTCCATATTCCGGCTCCTCCTCCTCCACTTCTCTCTCTCCACCGTCCTCGCCGCCCATTCCCAACCCCTCACTCCCCCCTACCTCTCACCCAACACAATTCACCCAAATTACCAAAACATGTTCAATTCCTTCAAAATCTTCATCTATAACTCAAACAGCACCTCCCCCTTTATCTCCCCATCCCAATCGCTCTTCTACACGCGCCTCCAGGACAGCCACTTCCCCACCGAAAACCCCGAAAAAGCCCATCTCTTCTTCGTCCCCTTCCCCTCGGACCTCCGCCCGCGCTCCGTCTCGCGCCTCATCAGATCGCTCCGCACCGAGCTTCCTTACTGGAACCGCACCCTCGGCGCCGACCATTTCTACCTCTCATGCACCGGCATCGGGTTCGAATCGGACCGTAATCTCGTCGAGTTGAAGAAAAACTCGGTCCACGGCGATCGATCTCGTGCTTCCCGACGCCGGCCGGGAAGTTCATCCCTCACAAGGACATTTCGCTTCCGCCGGTCCCGAGCACTCCCGCGCCGACGAGCAACACCGCGAGTTTCTTGGGCTACGCCAAGTTCGATTGGGTCAAAGAGTCAACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

201

Amino Acids

23.01

Weight (kDa)

11.55

Isoelectric Point (pI)

74.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 47 - 145 8.8e-11 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 362
AccII CGCG 5 cut(s) 214, 298, 310, 535, 553
AciI CCGC 9 cut(s) 9, 63, 292, 296, 328, 352, 514, 533, 551
AclI AACGTT 1 cut(s) 598
AcoI YGGCCR 1 cut(s) 476
AcyI GRCGYC 2 cut(s) 363, 472
AfiI CCNNNNNNNGG 4 cut(s) 21, 396, 474, 498
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 3 cut(s) 136, 145, 430
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 1 cut(s) 337
AluI AGCT 1 cut(s) 337
Alw21I GWGCWC 1 cut(s) 529
Alw26I GTCTC 1 cut(s) 310
Ama87I CYCGRG 1 cut(s) 522
AoxI GGCC 1 cut(s) 476
AspLEI GCGC 5 cut(s) 216, 300, 312, 365, 537
AspS9I GGNCC 4 cut(s) 286, 409, 442, 519
AsuC2I CCSGG 1 cut(s) 480
AsuHPI GGTGA 2 cut(s) 90, 104
AsuII TTCGAA 1 cut(s) 402
AvaI CYCGRG 1 cut(s) 522
AvaII GGWCC 4 cut(s) 286, 409, 442, 519
BanI GGYRCC 1 cut(s) 362
BauI CACGAG 1 cut(s) 459
Bbv12I GWGCWC 1 cut(s) 529
BccI CCATC 2 cut(s) 199, 267
BceAI ACGGC 1 cut(s) 463
BcgI CGANNNNNNTGC 4 cut(s) 376, 382, 410, 416
BciT130I CCWGG 1 cut(s) 221
BcnI CCSGG 1 cut(s) 480
BcoDI GTCTC 1 cut(s) 310
BfoI RGCGCY 1 cut(s) 366
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 2 cut(s) 221, 480
Bme18I GGWCC 4 cut(s) 286, 409, 442, 519
BmeT110I CYCGRG 1 cut(s) 522
BmgT120I GGNCC 4 cut(s) 286, 409, 442, 519
BmiI GGNNCC 4 cut(s) 26, 350, 364, 521
BmrFI CCNGG 2 cut(s) 221, 480
BmsI GCATC 1 cut(s) 402
BpmI CTGGAG 1 cut(s) 203
Bpu14I TTCGAA 1 cut(s) 402
BpuMI CCSGG 1 cut(s) 480
Bsa29I ATCGAT 1 cut(s) 454
BsaHI GRCGYC 2 cut(s) 363, 472
BsaJI CCNNGG 3 cut(s) 282, 358, 445
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 4 cut(s) 21, 396, 474, 498
Bse118I RCCGGY 3 cut(s) 389, 474, 516
Bse1I ACTGG 1 cut(s) 350
BseBI CCWGG 1 cut(s) 221
BseCI ATCGAT 1 cut(s) 454
BseDI CCNNGG 3 cut(s) 282, 358, 445
BseGI GGATG 2 cut(s) 191, 488
BseLI CCNNNNNNNGG 4 cut(s) 21, 396, 474, 498
BseNI ACTGG 1 cut(s) 350
BseRI GAGGAG 3 cut(s) 17, 20, 23
BseX3I CGGCCG 1 cut(s) 476
Bsh1236I CGCG 5 cut(s) 214, 298, 310, 535, 553
Bsh1285I CGRYCG 2 cut(s) 454, 479
BshFI GGCC 1 cut(s) 478
BshNI GGYRCC 1 cut(s) 362
BshVI ATCGAT 1 cut(s) 454
BsiEI CGRYCG 2 cut(s) 454, 479
BsiHKAI GWGCWC 1 cut(s) 529
BsiHKCI CYCGRG 1 cut(s) 522
BsiSI CCGG 5 cut(s) 22, 390, 475, 479, 517
BslFI GGGAC 2 cut(s) 257, 505
BslI CCNNNNNNNGG 4 cut(s) 21, 396, 474, 498
BsmAI GTCTC 1 cut(s) 310
BsmBI CGTCTC 1 cut(s) 310
BsmFI GGGAC 2 cut(s) 257, 505
BsnI GGCC 1 cut(s) 478
BsoBI CYCGRG 1 cut(s) 522
Bsp119I TTCGAA 1 cut(s) 402
Bsp1286I GDGCHC 1 cut(s) 529
Bsp143I GATC 3 cut(s) 320, 451, 455
BspACI CCGC 9 cut(s) 9, 63, 292, 296, 328, 352, 514, 533, 551
BspANI GGCC 1 cut(s) 478
BspDI ATCGAT 1 cut(s) 454
BspFNI CGCG 5 cut(s) 214, 298, 310, 535, 553
BspLI GGNNCC 4 cut(s) 26, 350, 364, 521
BspQI GCTCTTC 1 cut(s) 209
BspT104I TTCGAA 1 cut(s) 402
BspT107I GGYRCC 1 cut(s) 362
BsrFI RCCGGY 3 cut(s) 389, 474, 516
BsrI ACTGG 1 cut(s) 350
BssAI RCCGGY 3 cut(s) 389, 474, 516
BssECI CCNNGG 3 cut(s) 282, 358, 445
BssMI GATC 3 cut(s) 320, 451, 455
BssNI GRCGYC 2 cut(s) 363, 472
BssSI CACGAG 1 cut(s) 459
Bst2BI CACGAG 1 cut(s) 459
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 2 cut(s) 55, 413
Bst6I CTCTTC 2 cut(s) 209, 269
BstACI GRCGYC 2 cut(s) 363, 472
BstBI TTCGAA 1 cut(s) 402
BstC8I GCNNGC 2 cut(s) 296, 476
BstDSI CCRYGG 1 cut(s) 445
BstF5I GGATG 2 cut(s) 191, 488
BstFNI CGCG 5 cut(s) 214, 298, 310, 535, 553
BstH2I RGCGCY 1 cut(s) 366
BstHHI GCGC 5 cut(s) 216, 300, 312, 365, 537
BstKTI GATC 3 cut(s) 323, 454, 458
BstMAI GTCTC 1 cut(s) 310
BstMBI GATC 3 cut(s) 320, 451, 455
BstMCI CGRYCG 2 cut(s) 454, 479
BstMWI GCNNNNNNNGC 1 cut(s) 360
BstNI CCWGG 1 cut(s) 221
BstNSI RCATGY 1 cut(s) 133
BstSCI CCNGG 2 cut(s) 219, 478
BstUI CGCG 5 cut(s) 214, 298, 310, 535, 553
BstZI CGGCCG 1 cut(s) 476
Bsu15I ATCGAT 1 cut(s) 454
BsuRI GGCC 1 cut(s) 478
BsuTUI ATCGAT 1 cut(s) 454
BtgI CCRYGG 1 cut(s) 445
BtsCI GGATG 2 cut(s) 191, 488
Cac8I GCNNGC 2 cut(s) 296, 476
CfoI GCGC 5 cut(s) 216, 300, 312, 365, 537
Cfr10I RCCGGY 3 cut(s) 389, 474, 516
Cfr13I GGNCC 4 cut(s) 286, 409, 442, 519
ClaI ATCGAT 1 cut(s) 454
CpoI CGGWCCG 1 cut(s) 409
CseI GACGC 1 cut(s) 480
CspI CGGWCCG 1 cut(s) 409
CviAII CATG 2 cut(s) 130, 384
CviJI RGCY 6 cut(s) 25, 228, 257, 337, 478, 566
CviKI_1 RGCY 6 cut(s) 25, 228, 257, 337, 478, 566
DinI GGCGCC 1 cut(s) 364
DpnI GATC 3 cut(s) 322, 453, 457
DpnII GATC 3 cut(s) 320, 451, 455
EaeI YGGCCR 1 cut(s) 476
EagI CGGCCG 1 cut(s) 476
Eam1104I CTCTTC 2 cut(s) 209, 269
EarI CTCTTC 2 cut(s) 209, 269
EciI GGCGGA 2 cut(s) 281, 503
EclXI CGGCCG 1 cut(s) 476
Eco47I GGWCC 4 cut(s) 286, 409, 442, 519
Eco52I CGGCCG 1 cut(s) 476
Eco88I CYCGRG 1 cut(s) 522
EcoRII CCWGG 1 cut(s) 219
EgeI GGCGCC 1 cut(s) 364
EheI GGCGCC 1 cut(s) 364
Esp3I CGTCTC 1 cut(s) 310
FaeI CATG 2 cut(s) 133, 387
FaiI YATR 4 cut(s) 17, 131, 159, 385
FaqI GGGAC 2 cut(s) 257, 505
FatI CATG 2 cut(s) 129, 383
FauI CCCGC 2 cut(s) 303, 540
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 2 cut(s) 178, 475
Fsp4HI GCNGC 1 cut(s) 63
GlaI GCGC 5 cut(s) 215, 299, 311, 364, 536
GluI GCNGC 1 cut(s) 63
GsuI CTGGAG 1 cut(s) 203
HaeII RGCGCY 1 cut(s) 366
HaeIII GGCC 1 cut(s) 478
HapII CCGG 5 cut(s) 22, 390, 475, 479, 517
HgaI GACGC 1 cut(s) 480
HhaI GCGC 5 cut(s) 216, 300, 312, 365, 537
Hin1I GRCGYC 2 cut(s) 363, 472
Hin1II CATG 2 cut(s) 133, 387
Hin6I GCGC 5 cut(s) 214, 298, 310, 363, 535
HinP1I GCGC 5 cut(s) 214, 298, 310, 363, 535
HincII GTYRAC 1 cut(s) 596
HindII GTYRAC 1 cut(s) 596
HinfI GANTC 2 cut(s) 404, 592
HpaII CCGG 5 cut(s) 22, 390, 475, 479, 517
HphI GGTGA 2 cut(s) 90, 104
Hpy166II GTNNAC 3 cut(s) 6, 445, 596
Hpy188I TCNGA 3 cut(s) 286, 320, 409
Hpy188III TCNNGA 2 cut(s) 468, 522
Hpy8I GTNNAC 3 cut(s) 6, 445, 596
Hpy99I CGWCG 3 cut(s) 425, 474, 543
HpyAV CCTTC 2 cut(s) 151, 286
HpyCH4III ACNGT 2 cut(s) 55, 413
HpyCH4IV ACGT 1 cut(s) 598
HpyCH4V TGCA 1 cut(s) 387
HpyF10VI GCNNNNNNNGC 1 cut(s) 360
HpySE526I ACGT 1 cut(s) 598
Hsp92I GRCGYC 2 cut(s) 363, 472
Hsp92II CATG 2 cut(s) 133, 387
HspAI GCGC 5 cut(s) 214, 298, 310, 363, 535
KasI GGCGCC 1 cut(s) 362
KroI GCCGGC 1 cut(s) 474
KroNI GCCGGC 1 cut(s) 476
Kzo9I GATC 3 cut(s) 320, 451, 455
LguI GCTCTTC 1 cut(s) 209
LmnI GCTCC 3 cut(s) 30, 305, 330
LpnPI CCDG 8 cut(s) 35, 206, 233, 331, 403, 488, 492, 530
LweI GCATC 1 cut(s) 402
MaeII ACGT 1 cut(s) 598
MalI GATC 3 cut(s) 322, 453, 457
MboI GATC 3 cut(s) 320, 451, 455
MboII GAAGA 5 cut(s) 142, 196, 256, 259, 442
MhlI GDGCHC 1 cut(s) 529
MluCI AATT 3 cut(s) 108, 118, 136
Mly113I GGCGCC 1 cut(s) 363
MlyI GAGTC 1 cut(s) 601
MroNI GCCGGC 1 cut(s) 474
MspI CCGG 5 cut(s) 22, 390, 475, 479, 517
MspR9I CCNGG 2 cut(s) 221, 480
MvaI CCWGG 1 cut(s) 221
MvnI CGCG 5 cut(s) 214, 298, 310, 535, 553
MwoI GCNNNNNNNGC 1 cut(s) 360
NaeI GCCGGC 1 cut(s) 476
NarI GGCGCC 1 cut(s) 363
NciI CCSGG 1 cut(s) 480
NdeII GATC 3 cut(s) 320, 451, 455
NgoMIV GCCGGC 1 cut(s) 474
NlaIII CATG 2 cut(s) 133, 387
NlaIV GGNNCC 4 cut(s) 26, 350, 364, 521
NmeAIII GCCGAG 1 cut(s) 339
NspI RCATGY 1 cut(s) 133
NspV TTCGAA 1 cut(s) 402
PciI ACATGT 1 cut(s) 129
PciSI GCTCTTC 1 cut(s) 209
PcsI WCGNNNNNNNCGW 2 cut(s) 466, 575
PdiI GCCGGC 1 cut(s) 476
PfeI GAWTC 1 cut(s) 404
PfoI TCCNGGA 1 cut(s) 219
PkrI GCNGC 1 cut(s) 64
Ple19I CGATCG 1 cut(s) 454
PleI GAGTC 1 cut(s) 600
PluTI GGCGCC 1 cut(s) 366
PpsI GAGTC 1 cut(s) 600
PscI ACATGT 1 cut(s) 129
Psp1406I AACGTT 1 cut(s) 598
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 4 cut(s) 26, 350, 364, 521
PspPI GGNCC 4 cut(s) 286, 409, 442, 519
PvuI CGATCG 1 cut(s) 454
Rsr2I CGGWCCG 1 cut(s) 409
RsrII CGGWCCG 1 cut(s) 409
SapI GCTCTTC 1 cut(s) 209
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 3 cut(s) 320, 451, 455
Sau96I GGNCC 4 cut(s) 286, 409, 442, 519
SchI GAGTC 1 cut(s) 601
ScrFI CCNGG 2 cut(s) 221, 480
SduI GDGCHC 1 cut(s) 529
SetI ASST 6 cut(s) 96, 176, 291, 339, 381, 601
SfaNI GCATC 1 cut(s) 402
SfoI GGCGCC 1 cut(s) 364
SfuI TTCGAA 1 cut(s) 402
SinI GGWCC 4 cut(s) 286, 409, 442, 519
Sse9I AATT 3 cut(s) 108, 118, 136
SsiI CCGC 9 cut(s) 9, 63, 292, 296, 328, 352, 514, 533, 551
SspDI GGCGCC 1 cut(s) 362
StyD4I CCNGG 2 cut(s) 219, 478
TaaI ACNGT 2 cut(s) 55, 413
TaiI ACGT 1 cut(s) 601
TaqI TCGA 4 cut(s) 402, 423, 454, 578
TaqII GACCGA 1 cut(s) 430
TasI AATT 3 cut(s) 108, 118, 136
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 1 cut(s) 404
TspDTI ATGAA 2 cut(s) 142, 477
TspGWI ACGGA 1 cut(s) 292
VpaK11BI GGWCC 4 cut(s) 286, 409, 442, 519
XceI RCATGY 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.