pycom01g16150
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0029198
Physical Location & Seq
Reverse (-)
15820979 .. 15821865
887 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 417 bp
ATGAGTGGTGGGATTCGCACAAGCGTGAAAGGATGCATTAATGTGAAACGCGTCACTTTGACGTTGGAGCCGATAGATGAGAACAAAGAGAATGAGACCATAACTAGACATTTGAGGAGTGAGACCCAATTAGCTGCTGTTGGTGGTTGCTTAGATAAGAAGCCAGCTGAAGTTCCTCATGACCTACCATGGCTGAGCTCTGCGGCCTCTAATTTTGAATGTACCATCACGGAAGCTAATCGAGGGTTTCCTGGCAGTGCCAAATGTTTAGGTTACGTGTTCTTGGGTGACTTAATGGATTTGCGAATGGGAGTATATGTCTCTTGCTTGCTTATAAGGTTAAGTATCCGAACAACGTTTTTCTTCTTAGGGAAGATAATGAATGTGCTACAAATAAGAGATATGCAAGAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

139

Amino Acids

15.31

Weight (kDa)

7.63

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029198)

Species Orthologous Gene IDs
pyrus_communis pycom01g15550 pycom01g16150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 335
AccII CGCG 1 cut(s) 51
AciI CCGC 1 cut(s) 203
AclI AACGTT 1 cut(s) 356
AcuI CTGAAG 1 cut(s) 189
AfaI GTAC 1 cut(s) 223
AflIII ACRYGT 2 cut(s) 49, 276
AgsI TTSAA 1 cut(s) 218
AjnI CCWGG 1 cut(s) 250
AleI CACNNNNGTG 1 cut(s) 23
AluBI AGCT 4 cut(s) 134, 167, 198, 236
AluI AGCT 4 cut(s) 134, 167, 198, 236
Alw21I GWGCWC 1 cut(s) 200
Alw26I GTCTC 3 cut(s) 89, 116, 325
AoxI GGCC 1 cut(s) 204
ApeKI GCWGC 1 cut(s) 134
AseI ATTAAT 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 299
BanII GRGCYC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 252
BciVI GTATCC 1 cut(s) 356
BcoDI GTCTC 3 cut(s) 89, 116, 325
BfaI CTAG 1 cut(s) 105
BfuI GTATCC 1 cut(s) 356
BisI GCNGC 2 cut(s) 135, 204
BlpI GCTNAGC 1 cut(s) 194
BlsI GCNGC 2 cut(s) 136, 205
Bme1390I CCNGG 1 cut(s) 252
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 1 cut(s) 252
BmsI GCATC 1 cut(s) 23
Bpu1102I GCTNAGC 1 cut(s) 194
BsaAI YACGTR 1 cut(s) 277
BsaI GGTCTC 2 cut(s) 89, 116
BsaJI CCNNGG 1 cut(s) 188
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 1 cut(s) 38
BseMII CTCAG 1 cut(s) 185
BseRI GAGGAG 1 cut(s) 130
BseXI GCAGC 1 cut(s) 121
Bsh1236I CGCG 1 cut(s) 51
BshFI GGCC 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 200
BsmAI GTCTC 3 cut(s) 89, 116, 325
BsnI GGCC 1 cut(s) 206
Bso31I GGTCTC 2 cut(s) 89, 116
Bsp1286I GDGCHC 1 cut(s) 200
Bsp1720I GCTNAGC 1 cut(s) 194
Bsp19I CCATGG 1 cut(s) 188
BspACI CCGC 1 cut(s) 203
BspANI GGCC 1 cut(s) 206
BspCNI CTCAG 1 cut(s) 186
BspFNI CGCG 1 cut(s) 51
BspHI TCATGA 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 69
BspTNI GGTCTC 2 cut(s) 89, 116
BssECI CCNNGG 1 cut(s) 188
BssT1I CCWWGG 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 252
BstBAI YACGTR 1 cut(s) 277
BstC8I GCNNGC 2 cut(s) 165, 329
BstDEI CTNAG 3 cut(s) 151, 194, 367
BstDSI CCRYGG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 38
BstFNI CGCG 1 cut(s) 51
BstMAI GTCTC 3 cut(s) 89, 116, 325
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 250
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 121
BsuI GTATCC 1 cut(s) 356
BsuRI GGCC 1 cut(s) 206
BtgI CCRYGG 1 cut(s) 188
BtsCI GGATG 1 cut(s) 38
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 262
Cac8I GCNNGC 2 cut(s) 165, 329
CciI TCATGA 1 cut(s) 178
CseI GACGC 1 cut(s) 40
Csp6I GTAC 1 cut(s) 222
CviAII CATG 2 cut(s) 179, 189
CviJI RGCY 8 cut(s) 70, 134, 163, 167, 193, 198, 206, 236
CviKI_1 RGCY 8 cut(s) 70, 134, 163, 167, 193, 198, 206, 236
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 3 cut(s) 151, 194, 367
Ecl136II GAGCTC 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 200
Eco31I GGTCTC 2 cut(s) 89, 116
Eco53kI GAGCTC 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 189
EcoICRI GAGCTC 1 cut(s) 198
EcoRII CCWGG 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 188
EcoT22I ATGCAT 1 cut(s) 38
EcoT38I GRGCYC 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 2 cut(s) 182, 192
FaiI YATR 7 cut(s) 101, 180, 190, 316, 318, 335, 404
FatI CATG 2 cut(s) 178, 188
Fnu4HI GCNGC 2 cut(s) 135, 204
FokI GGATG 1 cut(s) 45
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 2 cut(s) 135, 204
FspBI CTAG 1 cut(s) 105
GluI GCNGC 2 cut(s) 135, 204
HaeIII GGCC 1 cut(s) 206
HgaI GACGC 1 cut(s) 40
Hin1II CATG 2 cut(s) 182, 192
HinfI GANTC 1 cut(s) 13
HphI GGTGA 1 cut(s) 299
Hpy188I TCNGA 1 cut(s) 350
Hpy188III TCNNGA 1 cut(s) 179
HpyCH4IV ACGT 3 cut(s) 62, 276, 356
HpyCH4V TGCA 2 cut(s) 36, 406
HpyF3I CTNAG 3 cut(s) 151, 194, 367
HpySE526I ACGT 3 cut(s) 62, 276, 356
Hsp92II CATG 2 cut(s) 182, 192
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 3 cut(s) 177, 237, 264
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 1 cut(s) 23
MaeI CTAG 1 cut(s) 105
MaeII ACGT 3 cut(s) 62, 276, 356
MaeIII GTNAC 3 cut(s) 52, 272, 287
MboII GAAGA 2 cut(s) 355, 385
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 2 cut(s) 128, 211
MluI ACGCGT 1 cut(s) 49
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 4 cut(s) 108, 186, 217, 236
Mph1103I ATGCAT 1 cut(s) 38
MseI TTAA 3 cut(s) 39, 293, 341
MslI CAYNNNNRTG 2 cut(s) 23, 41
MspA1I CMGCKG 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 252
MvaI CCWGG 1 cut(s) 252
MvnI CGCG 1 cut(s) 51
NcoI CCATGG 1 cut(s) 188
NlaIII CATG 2 cut(s) 182, 192
NlaIV GGNNCC 1 cut(s) 69
NmuCI GTSAC 2 cut(s) 52, 287
NsiI ATGCAT 1 cut(s) 38
OliI CACNNNNGTG 1 cut(s) 23
PagI TCATGA 1 cut(s) 178
PcsI WCGNNNNNNNCGW 1 cut(s) 68
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 2 cut(s) 136, 205
Ppu21I YACGTR 1 cut(s) 277
PshBI ATTAAT 1 cut(s) 39
PsiI TTATAA 1 cut(s) 335
Psp124BI GAGCTC 1 cut(s) 200
Psp1406I AACGTT 1 cut(s) 356
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 69
PvuII CAGCTG 1 cut(s) 167
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
RseI CAYNNNNRTG 2 cut(s) 23, 41
SacI GAGCTC 1 cut(s) 200
SaqAI TTAA 3 cut(s) 39, 293, 341
SatI GCNGC 2 cut(s) 135, 204
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 1 cut(s) 200
SfaNI GCATC 1 cut(s) 23
SmiMI CAYNNNNRTG 2 cut(s) 23, 41
Sse9I AATT 2 cut(s) 128, 211
SsiI CCGC 1 cut(s) 203
SspMI CTAG 1 cut(s) 105
SstI GAGCTC 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 250
StyI CCWWGG 1 cut(s) 188
TaiI ACGT 3 cut(s) 65, 279, 359
TaqI TCGA 1 cut(s) 241
TasI AATT 2 cut(s) 128, 211
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 3 cut(s) 39, 293, 341
Tru9I TTAA 3 cut(s) 39, 293, 341
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 2 cut(s) 52, 287
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 2 cut(s) 52, 287
TspDTI ATGAA 1 cut(s) 395
TspGWI ACGGA 1 cut(s) 245
TspRI CASTG 1 cut(s) 262
VspI ATTAAT 1 cut(s) 39
XspI CTAG 1 cut(s) 105
Zsp2I ATGCAT 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.